KEGG   Lethenteron reissneri (Far Eastern brook lamprey): 133345165
Entry
133345165         CDS       T09663                                 
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133345165 (SF3B1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lrj03041]
    133345165 (SF3B1)
   03036 Chromosome and associated proteins [BR:lrj03036]
    133345165 (SF3B1)
Spliceosome [BR:lrj03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    133345165 (SF3B1)
 Complex B
    133345165 (SF3B1)
 Complex C
   U2 SnRNP specific factors
    133345165 (SF3B1)
Chromosome and associated proteins [BR:lrj03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    133345165 (SF3B1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 HEAT Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG DNA_pol_phi CEP104-like_TOG UNC45-central
Other DBs
NCBI-GeneID: 133345165
NCBI-ProteinID: XP_061411674
LinkDB
Position
21:complement(8493047..8510552)
AA seq 1339 aa
MASVAKTREDIEAQIREIQGKRKALDDQPKDDESGVGLDSTGFFDQEIYGGSDSRFTGYV
TSIAANEVEEDDEDTVSASLPENKRATYHAPAALLNDIPQASEMFDPFAEHRAPRIADRD
DEYRMRRRQMIISPERQDPFADGGKTPDPKALARSYMDVMKEAHLTKEEKEIRMQLADKA
KAGELKVVNGAAQTAPKERKRRWDQTADQTPSTTPSTTPKKKMSTWDQAETPGHTPGHTP
GHTPGHTPGHATPGHTPGHTPSNSRWDETPGRAKGSETPGATPSARMWDPTPGHTPGGSA
TPGRDTPGHATPGHSGSTPSNRRNRWDETPRTERETPGHGSGWAETPRTDRGGESAGETP
TPGASKRKSRWDETPVSQMGGQTPILTPSGITPKGTPAMGMATPTPGHLMSMTPEQLQAW
RWEREIDERNRPLTDEELDAMFPEGYKVLQPPAGYVPIRTPARKLTATPTPMGGLTTGFH
MQTPDRSAKSANDQPSGNLPFLKPDDMQYFDKLLVDVDESTLSSEEQKERKIMKLLLKIK
NGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDD
LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVR
NTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQISILMGCAILPHLRS
LVEIIEHGLVDEQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAA
FLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVESTY
IKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIVQRIVDDLKDEAEQYR
KMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALAKRV
KPYLPQICGTVLWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEE
YPEVLGSILGALKSIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR
GAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE
RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDY
IYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDALNHLLNFVWPNIFETSPH
LIQAVMGALEGMRVSLGPCRLLQYALQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYP
RIVNDEKNMYIRTELDYFV
NT seq 4020 nt   +upstreamnt  +downstreamnt
atggcgtccgtcgccaaaacccgcgaagacattgaggcgcagatccgtgaaatccagggc
aagcgcaaagccctcgatgaccaaccaaaggatgatgaaagtggcgttgggcttgactca
actggcttctttgaccaagaaatatatggtggtagtgacagtcgcttcactggatacgtg
acttccattgctgccaatgaggtggaagaggatgacgaggatactgtttctgcttctctg
cctgaaaataaaagagccacctaccatgcacctgcggcacttctcaacgatattcctcag
gcttctgagatgtttgatccatttgctgaacaccgggctcctcgcattgctgaccgggat
gacgagtaccgcatgcgcagaaggcagatgatcatctcccccgagcgccaggaccctttc
gctgatggagggaagactccagatcccaaggcattggccagatcctacatggatgtgatg
aaagaggctcaccttaccaaagaggagaaagagatcaggatgcagcttgcagacaaggcc
aaggcaggagagctgaaggttgtgaatggagcagcacaaactgccccaaaagagcgcaaa
cggcgctgggaccagaccgctgaccagacaccaagcaccacacccagtaccacccctaaa
aagaagatgtccacttgggatcaggctgagacacctggtcacacaccgggtcacacaccg
ggacacactccgggacacactccaggccacgcgactcctggacacactccagggcacaca
ccctcaaacagccgttgggatgaaacacctgggcgagcaaaaggaagcgagacccccggg
gcgaccccgagcgcccgcatgtgggaccccactccaggccacacgcccggtggcagtgct
actccaggcagggacactccgggtcatgccacgcccgggcatagtggctccacacccagc
aaccggcgcaaccgatgggatgagacgccccgcactgagagagaaaccccgggacacggg
agtggctgggcggagacgccacgcaccgataggggtggcgagtcggctggagaaaccccc
acacctggcgctagcaagcgcaagtcacgctgggacgagacccctgtgagccaaatgggg
ggacagacgccaatcctgacccccagtggaatcacacccaagggaaccccagccatgggc
atggccacacccactccaggtcacttgatgagcatgacaccagaacaactccaggcctgg
agatgggagcgtgaaattgacgagcggaaccgccctctcaccgatgaggaactcgatgcc
atgttccctgagggatataaggtgttacaacctccagcaggatacgtgcctatccgcact
ccggcccgcaagctgaccgctaccccgacccccatgggcggcctcaccaccggcttccac
atgcagacacccgaccgctctgccaaatccgccaatgatcagccctctggcaaccttcca
tttctcaagcctgacgatatgcagtatttcgacaagttgctggttgatgtggacgaatct
accctcagctcagaagagcagaaggaaaggaagatcatgaagctgttgcttaagatcaaa
aatggaactcctccaatgaggaaggcggcgctgcgtcaaatcacagacaaagcccgtgag
tttggtgcaggtccactcttcaaccagatcctgccattgctcatgtctccaacactggaa
gaccaggagcgccatctgctggttaaagtcatcgatcgcattctctacaagcttgacgac
cttgtccggccttatgtgcacaagatcctcgtggtcattgagcctttgctgattgatgaa
gattattatgctcgtgtggagggaagggagatcatttcaaatttagcgaaggctgccggc
ttggccacgatgatttccaccatgcgtccagacatcgacaacatggatgagtacgtgcgt
aacacgacagcgcgtgccttcgccgtcgtcgcttctgcccttggcatcccctcgctgctg
ccttttctcaaggctgtgtgcaaaagcaagaagtcatggcaggcacgccacaccggaatc
aagattgtacagcagatctcaatcctcatgggctgtgccattctgcctcacttgcgcagt
ttggttgagatcattgagcatggcctagttgacgagcagcagaaggtgcgaaccattact
gccctggccttggctgctttggctgaagctgccactccctacggcattgaatcctttgac
tccgttctcaaacctctctggaagggcattcgacaacacagaggaaagggtcttgctgcc
ttcctcaaagccatcggttaccttattcccctgatggatgccgagtatgccaactattac
accagggaagtgatgcttatcctcatccgagagttccagtctcctgacgaggagatgaaa
aagattgtgctaaaggtagtgaagcagtgttgcgctacagatggtgttgagtcaacctac
atcaagacagaaattctgccaccattctttaaacacttctggcagcaccgcatggccctg
gaccggaggaactacagacagctggtggacacgacggtggagctggccaataaggtgggt
gcggcggagattgtgcagcgcattgtggacgacctgaaggatgaggcggagcagtaccgc
aagatggtaatggagacgattgagaagatcatgggcaacttgggtgcagccgacatcgac
cacaagctggaggagcagctcatcgacggcatcctctatgcgtttcaggagcagactacg
gaggactcggtcatgctgaatgggttcggcacggtggtgaacgccctggcaaagcgcgtg
aagccttacctcccccagatttgtggtactgtgctgtggcgcctcaacaacaagtctgcc
aaagtgcggcagcaagccgccgaccttatctcgcgcattgctgttgtcatgaagacctgc
caggaggagaaactcatgggccacttgggagtggtgctctatgagtacctcggagaggag
taccccgaggtactgggcagcatcttgggagccctcaagagcattgtcaacgtcattggc
atgcataagatgacgccccccatcaaggatttgttacctcgtttgacccctatcctgaag
aaccggcacgagaaggtgcaggagaactgcattgacctcgtgggccgaattgccgacagg
ggggcagagtacgtgtctgcacgcgagtggatgaggatctgtttcgagctgctggagctg
ctgaaggcccacaagaaggccatccgccgagccactgtcaacacctttggctacatcgcc
aaggccatcgggccgcacgacgtattggccacactgctcaacaacctgaaggtgcaggag
cgacagaaccgtgtgtgcacaaccgtggcgatcgccatcgtggccgagacctgctctccc
ttcacagtgctgccagcgctcatgaatgagtaccgcgtgccagagctcaacgtgcagaac
ggtgtgctgaagtcgctctcctttctgtttgaatacattggagagatgggcaaggactac
atctatgccgtgacacctctgctagaggatgccctaatggacagggaccttgtgcaccga
cagacggccagtgcagtggtacagcacatgtcactgggtgtgtatggatttggatgtgag
gacgctctcaaccacctactcaacttcgtgtggccaaacatctttgagacgtctcctcat
ctgatccaggctgtgatgggcgctctggaaggcatgcgtgtatccctgggaccatgccgc
ctgttgcagtatgccctgcagggtttgttccatccagcgcggaaagtgcgtgatgtttac
tggaaaatctacaactccatctacattggctcacaggacgcacttattgcacactaccca
cgtattgtcaacgacgagaagaacatgtacatccgtactgagcttgactacttcgtataa

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