Lethenteron reissneri (Far Eastern brook lamprey): 133345165
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Entry
133345165 CDS
T09663
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133345165 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrj03041
]
133345165 (SF3B1)
03036 Chromosome and associated proteins [BR:
lrj03036
]
133345165 (SF3B1)
Spliceosome [BR:
lrj03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133345165 (SF3B1)
Complex B
133345165 (SF3B1)
Complex C
U2 SnRNP specific factors
133345165 (SF3B1)
Chromosome and associated proteins [BR:
lrj03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
133345165 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
HEAT
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
DNA_pol_phi
CEP104-like_TOG
UNC45-central
Motif
Other DBs
NCBI-GeneID:
133345165
NCBI-ProteinID:
XP_061411674
LinkDB
All DBs
Position
21:complement(8493047..8510552)
Genome browser
AA seq
1339 aa
AA seq
DB search
MASVAKTREDIEAQIREIQGKRKALDDQPKDDESGVGLDSTGFFDQEIYGGSDSRFTGYV
TSIAANEVEEDDEDTVSASLPENKRATYHAPAALLNDIPQASEMFDPFAEHRAPRIADRD
DEYRMRRRQMIISPERQDPFADGGKTPDPKALARSYMDVMKEAHLTKEEKEIRMQLADKA
KAGELKVVNGAAQTAPKERKRRWDQTADQTPSTTPSTTPKKKMSTWDQAETPGHTPGHTP
GHTPGHTPGHATPGHTPGHTPSNSRWDETPGRAKGSETPGATPSARMWDPTPGHTPGGSA
TPGRDTPGHATPGHSGSTPSNRRNRWDETPRTERETPGHGSGWAETPRTDRGGESAGETP
TPGASKRKSRWDETPVSQMGGQTPILTPSGITPKGTPAMGMATPTPGHLMSMTPEQLQAW
RWEREIDERNRPLTDEELDAMFPEGYKVLQPPAGYVPIRTPARKLTATPTPMGGLTTGFH
MQTPDRSAKSANDQPSGNLPFLKPDDMQYFDKLLVDVDESTLSSEEQKERKIMKLLLKIK
NGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDD
LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVR
NTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQISILMGCAILPHLRS
LVEIIEHGLVDEQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAA
FLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVESTY
IKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIVQRIVDDLKDEAEQYR
KMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALAKRV
KPYLPQICGTVLWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEE
YPEVLGSILGALKSIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR
GAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE
RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDY
IYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDALNHLLNFVWPNIFETSPH
LIQAVMGALEGMRVSLGPCRLLQYALQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYP
RIVNDEKNMYIRTELDYFV
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtcgccaaaacccgcgaagacattgaggcgcagatccgtgaaatccagggc
aagcgcaaagccctcgatgaccaaccaaaggatgatgaaagtggcgttgggcttgactca
actggcttctttgaccaagaaatatatggtggtagtgacagtcgcttcactggatacgtg
acttccattgctgccaatgaggtggaagaggatgacgaggatactgtttctgcttctctg
cctgaaaataaaagagccacctaccatgcacctgcggcacttctcaacgatattcctcag
gcttctgagatgtttgatccatttgctgaacaccgggctcctcgcattgctgaccgggat
gacgagtaccgcatgcgcagaaggcagatgatcatctcccccgagcgccaggaccctttc
gctgatggagggaagactccagatcccaaggcattggccagatcctacatggatgtgatg
aaagaggctcaccttaccaaagaggagaaagagatcaggatgcagcttgcagacaaggcc
aaggcaggagagctgaaggttgtgaatggagcagcacaaactgccccaaaagagcgcaaa
cggcgctgggaccagaccgctgaccagacaccaagcaccacacccagtaccacccctaaa
aagaagatgtccacttgggatcaggctgagacacctggtcacacaccgggtcacacaccg
ggacacactccgggacacactccaggccacgcgactcctggacacactccagggcacaca
ccctcaaacagccgttgggatgaaacacctgggcgagcaaaaggaagcgagacccccggg
gcgaccccgagcgcccgcatgtgggaccccactccaggccacacgcccggtggcagtgct
actccaggcagggacactccgggtcatgccacgcccgggcatagtggctccacacccagc
aaccggcgcaaccgatgggatgagacgccccgcactgagagagaaaccccgggacacggg
agtggctgggcggagacgccacgcaccgataggggtggcgagtcggctggagaaaccccc
acacctggcgctagcaagcgcaagtcacgctgggacgagacccctgtgagccaaatgggg
ggacagacgccaatcctgacccccagtggaatcacacccaagggaaccccagccatgggc
atggccacacccactccaggtcacttgatgagcatgacaccagaacaactccaggcctgg
agatgggagcgtgaaattgacgagcggaaccgccctctcaccgatgaggaactcgatgcc
atgttccctgagggatataaggtgttacaacctccagcaggatacgtgcctatccgcact
ccggcccgcaagctgaccgctaccccgacccccatgggcggcctcaccaccggcttccac
atgcagacacccgaccgctctgccaaatccgccaatgatcagccctctggcaaccttcca
tttctcaagcctgacgatatgcagtatttcgacaagttgctggttgatgtggacgaatct
accctcagctcagaagagcagaaggaaaggaagatcatgaagctgttgcttaagatcaaa
aatggaactcctccaatgaggaaggcggcgctgcgtcaaatcacagacaaagcccgtgag
tttggtgcaggtccactcttcaaccagatcctgccattgctcatgtctccaacactggaa
gaccaggagcgccatctgctggttaaagtcatcgatcgcattctctacaagcttgacgac
cttgtccggccttatgtgcacaagatcctcgtggtcattgagcctttgctgattgatgaa
gattattatgctcgtgtggagggaagggagatcatttcaaatttagcgaaggctgccggc
ttggccacgatgatttccaccatgcgtccagacatcgacaacatggatgagtacgtgcgt
aacacgacagcgcgtgccttcgccgtcgtcgcttctgcccttggcatcccctcgctgctg
ccttttctcaaggctgtgtgcaaaagcaagaagtcatggcaggcacgccacaccggaatc
aagattgtacagcagatctcaatcctcatgggctgtgccattctgcctcacttgcgcagt
ttggttgagatcattgagcatggcctagttgacgagcagcagaaggtgcgaaccattact
gccctggccttggctgctttggctgaagctgccactccctacggcattgaatcctttgac
tccgttctcaaacctctctggaagggcattcgacaacacagaggaaagggtcttgctgcc
ttcctcaaagccatcggttaccttattcccctgatggatgccgagtatgccaactattac
accagggaagtgatgcttatcctcatccgagagttccagtctcctgacgaggagatgaaa
aagattgtgctaaaggtagtgaagcagtgttgcgctacagatggtgttgagtcaacctac
atcaagacagaaattctgccaccattctttaaacacttctggcagcaccgcatggccctg
gaccggaggaactacagacagctggtggacacgacggtggagctggccaataaggtgggt
gcggcggagattgtgcagcgcattgtggacgacctgaaggatgaggcggagcagtaccgc
aagatggtaatggagacgattgagaagatcatgggcaacttgggtgcagccgacatcgac
cacaagctggaggagcagctcatcgacggcatcctctatgcgtttcaggagcagactacg
gaggactcggtcatgctgaatgggttcggcacggtggtgaacgccctggcaaagcgcgtg
aagccttacctcccccagatttgtggtactgtgctgtggcgcctcaacaacaagtctgcc
aaagtgcggcagcaagccgccgaccttatctcgcgcattgctgttgtcatgaagacctgc
caggaggagaaactcatgggccacttgggagtggtgctctatgagtacctcggagaggag
taccccgaggtactgggcagcatcttgggagccctcaagagcattgtcaacgtcattggc
atgcataagatgacgccccccatcaaggatttgttacctcgtttgacccctatcctgaag
aaccggcacgagaaggtgcaggagaactgcattgacctcgtgggccgaattgccgacagg
ggggcagagtacgtgtctgcacgcgagtggatgaggatctgtttcgagctgctggagctg
ctgaaggcccacaagaaggccatccgccgagccactgtcaacacctttggctacatcgcc
aaggccatcgggccgcacgacgtattggccacactgctcaacaacctgaaggtgcaggag
cgacagaaccgtgtgtgcacaaccgtggcgatcgccatcgtggccgagacctgctctccc
ttcacagtgctgccagcgctcatgaatgagtaccgcgtgccagagctcaacgtgcagaac
ggtgtgctgaagtcgctctcctttctgtttgaatacattggagagatgggcaaggactac
atctatgccgtgacacctctgctagaggatgccctaatggacagggaccttgtgcaccga
cagacggccagtgcagtggtacagcacatgtcactgggtgtgtatggatttggatgtgag
gacgctctcaaccacctactcaacttcgtgtggccaaacatctttgagacgtctcctcat
ctgatccaggctgtgatgggcgctctggaaggcatgcgtgtatccctgggaccatgccgc
ctgttgcagtatgccctgcagggtttgttccatccagcgcggaaagtgcgtgatgtttac
tggaaaatctacaactccatctacattggctcacaggacgcacttattgcacactaccca
cgtattgtcaacgacgagaagaacatgtacatccgtactgagcttgactacttcgtataa
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