KEGG   Lethenteron reissneri (Far Eastern brook lamprey): 133345377
Entry
133345377         CDS       T09663                                 
Name
(RefSeq) collagen alpha-1(I) chain-like
  KO
K19719  collagen type II alpha
Organism
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04510  Focal adhesion
lrj04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:lrj00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    133345377
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    133345377
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:lrj00536]
    133345377
Glycosaminoglycan binding proteins [BR:lrj00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   133345377
SSDB
Motif
Pfam: Collagen COLFI VWC VWC2L_2nd
Other DBs
NCBI-GeneID: 133345377
NCBI-ProteinID: XP_061412059
LinkDB
Position
21:20596568..20657965
AA seq 1463 aa
MSIFVHGRILLLLAALQALFITVSSQRQNPEGSCEYDGQEYTDRAIWKPEPCRICLCDQG
TIMCDQISCEQLDCPNSIVPQGECCPVCTQARGPQGEKGQPGDPPRFTIRPGPQGGVGPS
GDGGPRGPRGRKGIKGMDGPQGRDGEPGIPGNPGAAGPAGQMSDDTSYLGMGGNFAAQYK
DQPGPPPPGPPGPMGPRGAPGSVGAPGPAGYQGAPGEPGSLGPPGPVGPSGPPGAVGKNG
DDGEAGRSGRNGERGLPGAQGGRGFPGTPGLPGIKGSRGFNGKDGGKGETGAAGARGESG
SPGANGVPGAAGPRGSPGERGRTGPNGPAGARGNDGQSGPPGPRGPNGPTGPAGFPGAPG
PKGDTGGPGARGPDGAQGPRGEPGASGPAGAAGPAGLAGSDGGIGAKGAAGAHGMAGAPG
SPGSVGGPGAAGSVGPPGPRGASGEPGLNGNKGEPGAKGDPGPSGGAGPSGPTGAAGKRG
GRGEPGSGGPPGPVGERGAHGSRGAPGGDGSPGAKGPPGERGATGPAGAKGNSGDPGRPG
EAGLPGPRGSTGSPGHAGSDGKTGPPGPAGNDGSPGSPGAAGARGAPGAMGFPGAKGPSG
ESGKAGEKGSVGPVGPIGLPGKDGDAGPAGPAGPAGAGGERGEAGPVGAPGFQGLPGAPG
APGEPGKAGEPGLPGENGMPGGAGPRGERGAPGERGETGPGGPPGPRGSNGSPGQDGARG
AAGPPGPAGTVGAAGLQGMPGERGASGLPGAKGERGEAGPVGIAGGPGKDGPRGLSGPVG
PAGPTGSNGERGEGGPPGPAGPAGGRGAPGERGEPGPPGSAGFPGAPGADGMPGARGEAG
ETGARGEPGQAGPPGNSGPSGPVGPPGATGAKGDRGPAGPPGATGFPGAAGRVGPPGSAG
GPGAPGPAGPDGKDGSRGMRGETGPPGKSGEVGAAGPAGPPGEKGSSGSDGPAGPQGPPG
SSGLAGSRGLVGMPGQRGERGFSGLPGPAGEPGRQGPAGPAGERGASGPAGPPGISGPSG
ESGRDGNPGSDGLPGRDGAQGSKGDRGPAGNSGLPGSPGPAGPPGAPGPAGNNGHKGEAG
PAGPSGASGTTGARGPAGPAGPRGDKGDAGSAGESGMKGHRGFSGLPGLPGPPGAPGDRG
IAGVFGSAGSRGLPGPTGPSGKDGVSGVPGPAGPAGPRGRNGETGPPGPPGAPGPPGPPG
SSGAGYDMGAYAGLMARRKMGDQSTDMLPYGLVLDASIKALNAQVESITSPDGSRKHPAR
SCRDLMLCHPEYKSGEYWIDPNEGCRADAIKVWCNMETGESCVNPGMPSLPRKNWWRSQA
ADKKHVWLGETMSPGSQFTYGDGSQNMEVQLTFLRLLSTDASQKITYHCKNSVAYLDSRA
GNLKKALMLQGSSDVEIRAEGNSRFTYSVLEDGCTTHTGVWGKTVIEYRTQKTSRLPFMD
IAPMDVGGSDQEFGVDVGPVCFL
NT seq 4392 nt   +upstreamnt  +downstreamnt
atgtcaatctttgtgcacggccggatactgctgctcctggcagcgttacaagcgctcttc
atcacagtcagcagccagcggcaaaatccggaaggaagctgcgaatatgacggccaagag
tacacagaccgggcgatatggaagccagagccttgccgcatttgcctgtgtgaccaggga
accataatgtgcgaccagatctcatgcgagcaacttgactgccccaactcaattgtaccc
cagggcgagtgctgccccgtatgcacacaagcccgaggaccgcaaggagagaagggtcag
cctggagacccacccagattcacgattcgccctggacctcagggaggagtgggtcccagc
ggcgatggtggtcccagaggtccccggggacggaagggaattaagggcatggatggtccc
caaggaagagatggagaacccggaattcccgggaaccccggtgcggctggaccagctggc
caaatgtctgatgatacttcctacttgggcatgggcgggaactttgctgctcagtacaag
gatcaacctggacctccaccacccggacccccgggacccatgggaccccgaggtgctccc
ggttccgtcggagccccgggcccagctggataccaaggagcccctggtgagcctggcagt
ttgggaccacctggcccagtcggaccttcaggtcccccaggcgctgttggcaagaatgga
gatgatggtgaggctggccgttcaggcaggaatggagagcgaggattgcctggtgctcag
ggaggtcgtgggttcccaggaacccctggtcttcccggcatcaagggaagcaggggcttc
aacggaaaagatggagggaagggagagactggtgctgctggagcaaggggagagtccggt
agccctggcgctaatggtgtgcctggagcagcgggcccacggggttcgcctggtgagagg
ggccgtacaggacccaatggccctgctggagcacgtggtaacgatggacagagtggaccc
ccgggacccaggggacccaacggacccactggcccagctggtttccccggtgctccagga
cccaagggtgacacaggaggacctggagctcgtgggcctgatggggcgcagggcccgcgt
ggagagcctggagcttcaggccctgcaggagctgctgggcctgccggtctggcaggatct
gatggcggtattggagccaaaggtgctgctggtgcccatggcatggctggtgccccaggt
tccccaggaagtgttggtggcccaggagctgccggatcagttggacctccgggccccagg
ggtgccagtggagagcctggcctgaatggaaacaagggtgagcctggtgccaagggtgac
cctggcccatctgggggtgcgggaccttctggcccaacaggagcagccggcaagcgtggc
ggtcgtggagagcctggatccggaggcccacccggccccgttggcgagaggggtgcacat
ggaagccgtggagcacctggtggagatgggtcacctggcgcaaagggacctcctggagag
aggggtgccacaggcccagctggagctaagggaaattctggagaccctggcaggcctggc
gaggccggtcttcctggtcctcggggttccactggaagtcccggacacgctggcagcgat
ggcaaaaccggtccccccggccccgctggaaatgatggtagccctggatcccctggtgct
gctggtgctcgtggcgctcctggagcaatgggtttccctggtgccaagggtccatccggc
gagtctggcaaggctggagagaagggctctgttggacccgttggccccattggtctgcct
ggcaaggatggagatgctggccctgctggtcccgctgggcctgctggtgctggtggagag
aggggagaagctggtcccgttggtgcccctggttttcagggattgcctggtgctcctggt
gcgcctggagagcctggcaaggctggcgagccgggtctccctggtgagaatgggatgcct
ggtggtgctggtccaagaggcgagcgtggagctcccggagagaggggagaaaccggtcca
gggggcccacccggaccccgtggaagcaacggttctcctggccaggatggagctaggggt
gctgctggtccccctggtcccgcgggcactgttggtgctgccggcctgcaagggatgccg
ggagagcgcggagcttctggtctgcctggcgccaagggcgagcggggcgaggctggtcct
gttggtatcgctggtggtcccggcaaggatggccccaggggattgagcggtccagtcggc
ccagctggccccaccggatccaacggagagaggggtgagggaggtcctcctggccctgct
ggccccgccggtggtcgtggagctcccggtgagcgtggcgagcctggtcctcctggatca
gctggattcccaggggctcctggcgccgatggtatgcccggggcacgaggtgaggctgga
gagacgggagcccgtggagagccaggccaggccggacccccaggaaacagtggtccttct
ggccctgtcggtccacctggagctactggtgctaagggagaccgtggcccagctggtcct
ccgggagctactggattcccaggtgctgcaggaagagtgggacctccaggctctgctggt
ggccccggtgctcccggcccagccggtcccgatggaaaggatggcagcaggggaatgcgc
ggagagaccggtccccccggcaagagcggagaggttggagctgcaggacctgccgggcct
cctggcgagaagggatcatctggcagcgatggccctgctggaccccaaggacctcctgga
tcatctggtttggctggcagccgtggtttggttggtatgcccggccagcgtggagagcgt
ggattctctggacttccaggacctgcgggtgagcccggaaggcagggcccagcgggtccc
gctggagagagaggagcatctgggcctgcaggtccacccggcatctctggcccatctgga
gagagcggccgcgatggaaacccaggaagcgatggtttgcctggccgcgatggagctcag
ggcagcaagggagaccgtggtccagccggaaattctggtctccccggatcccccggccca
gctggtcctcccggagcccctggccctgctggaaataatggacacaagggagaggctggt
cctgctggtccttctggtgcttccggtaccactggtgcccgtggtcctgcgggtcctgca
ggtcctcgtggtgacaagggtgatgctggttccgctggagaatcaggaatgaagggccac
cgtggcttctcgggtctgcctggtctccctggacccccgggtgctccaggtgacaggggc
atcgctggagtgttcggctccgctggttccaggggtctccctggcccaactggccccagc
ggtaaggatggcgtcagtggcgttcctggccctgctggacctgctggacctcgaggccgc
aatggagagaccggtcctcccggccctcctggagctcctggaccacccggccctcccggc
agctccggcgccggctacgacatgggcgcatacgctgggttgatggcacgccgcaagatg
ggtgaccagtccactgacatgctgccatacggcctggtgctggacgcctccatcaaggca
ctgaacgcccaagtggagagcatcacctccccggatgggagccgcaagcacccagcccga
tcctgccgggatctcatgctctgccatcctgagtacaagagcggtgagtactggattgac
cccaacgagggctgccgtgccgacgccatcaaggtgtggtgcaacatggagacgggcgag
agctgcgtgaacccgggcatgcccagcctgccacgcaagaactggtggcgcagccaggca
gccgacaagaagcacgtgtggctcggagagaccatgagccccggatcccagttcacgtac
ggtgatggcagccagaacatggaggtgcagctgaccttcctgcgcctgctgtccaccgac
gcatcccagaagatcacctaccactgcaagaacagcgtggcctacctggacagccgtgcc
ggcaacctcaagaaggccctgatgctgcagggctccagcgacgtggagatccgtgccgag
ggcaactctcggttcacttactctgtgctggaggatgggtgcactacgcacaccggcgtg
tggggcaagacggtgatcgagtacaggacgcagaagaccagccgcctgccgttcatggac
atagccccaatggacgtcggtggttccgaccaggagtttggcgtagatgtcggtcccgtc
tgcttcctgtaa

DBGET integrated database retrieval system