Lethenteron reissneri (Far Eastern brook lamprey): 133345569
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Entry
133345569 CDS
T09663
Symbol
PDCD11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lrj03009
]
133345569 (PDCD11)
Ribosome biogenesis [BR:
lrj03009
]
Eukaryotic type
90S particles
Other 90S particles
133345569 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Spt6_S1
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_16
TPR_CcmH_CycH
ARM_TT21
ARM_TT21_5th
UTP6_C
TPR_9
MDM10
Motif
Other DBs
NCBI-GeneID:
133345569
NCBI-ProteinID:
XP_061412454
LinkDB
All DBs
Position
22:complement(6396030..6438032)
Genome browser
AA seq
1842 aa
AA seq
DB search
MEEDFPRGGVQPKERVAARAIDKPAAHSDNLFGQQELEIEGKKRRAKDEGEKVKKMKFEQ
EAISTKHAVLKPNKVQFIDILKLKMVNPDMLVLGCVKVSLDHELEVGLPGCLTGNVQIAH
VCDAYTKSLGDNMDSNLESETIAPLSELYPPGTLVPCRVMEVVQGKGNWCRINLSVNPRD
VNKELSASALRPGMLLHGCVASLEDHGYVVDIGVYGTQAFLSKAKAQALVNSKKAGQNLS
VGQPVWCIVETVRSQGHSVQLSASPTKLSAAIANEKHGWTLDNLLPGVILSGTIERVEHD
GLVVEFLGLFEGSVDSLHLSPQERYKKGQKVKVCVLHVMPSSKLIGLSTLPALLQPGKPV
SDPIGFTIGDVFEDCAISRFLTGSGILLVLPNGSSAFVHVKQISDKERQFLSEDSKHKCR
VIGFSHVDQAAIASLRQSVIEGPFMRYSDLELGQTVEGTVLAVGKFGLQVRLTDHVRGFV
PLAHLADVAVLHPEKKFSPGNEVTCKVLNCCAEKHKLMLTHKRALVRSKLRPLVSFESAV
PGTVAHGTVVCVRDFGCIVRFYGDVKALARRSDLGLDFGTDPTQAFYTGQVVKAMVLNSS
PAEERMLVSLSGTVSGKETQDAGGPVQQTSFAVEVGKCVDVQVRCKSEKGLDVTVMDSGA
LGFMPMMHLSDNVHVCRLLLELVEPGDVMSATCFSERNGKILLTKKHALQVALSGSNVPK
TLGDLQAGMLLVGVTRRMLPYGVSVEFPYALRGMAFKTALSDEYVVSCEEFYSVGQTVLA
AVTRVDEEKSHLDISLRVSECLADAALEGTALLSQALQEVVQARALLASKGREFPKPGQM
LKATVEEVSADKSVVFKSESAPGVSLKATEHHVEGQQLTVGQEVSARVLFVDFLASTVHV
SLKSELLPKRKKKKQKQLCEGYVYFATVQFIGSDLAVASVEENSHLIFLPLANHLNEMLR
PNLGWLRVGEKLKVVVKCADPEEHDGVLVAAPDSGHLGNSAFRTRARMASVSEEGGEVTD
GADAVKGRALRLGDVYKGTVKSSRGMRAMVTLPGGIVGRVHVSEIRDEATTGQKPTMSLK
AGETVAVKVIGGQEIKTHKYLPITHQNLVIHLPELTMRPSKLNSNNKEDYCIRSAKECLE
SYQPGQTITCFVNKYQEDRKALWVDVNAVVSGRVEQLLISNKPKVLDNPLQKFRVGCAVQ
ATVVTCKVEQELLSLSLSGVYELSPGTLTLGRVKCIQPGIGLLLSLPLGHTGRVSLTELN
DSFVQKPLAAFEEGQIVPCCVLENGGKMRVMLSLRDSRVKPPTGDEEAVVKDKELSSVED
LTVGSVIRGYVHTIVNNQVLVNLSWCVMGRISLRNLSKYFVSDSSLMERHIHKGGLISVK
VLSVDAETKRVELSSLPNDTGGKDLFPGSIGLRLWRKNDDKDKTRKRKAEADTAEPVPEE
KKKKKRKTETEKAEECTDSGVEIYFREGGDDSETEKKGSAKAERGAASLERLQVPGSFSW
DASLASLQTGILGARNGGGGIDTSGDEDDADTAGQQKKKQRKNRQEAFAERKREEKELAQ
LEARLADPSRVPQSVDDFDRLVLSSPNSSLVWLQYMAFHLQATEVDRARAVAERALKTIS
FREEQEKLNVWVALLNLENLYGDEASLMRAFERAVQHNDALKAFQHLAQIYIGSDKFQQA
DVLYNKMLRRFRQEKAVWLAYGSFLVQRGQTDSARRLMQRALKSLPEREHVDVIVKFAQL
DFRSGDVEHGVAVFESTLSSYPKRTDIWSIYIDMLAKHGTAQQIRAVFERVVHMNFSPKR
MKFFFKRYLDYERKHGDAASVQRVRQKALEYVEEKSSVGAKQ
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagatttcccccgaggaggtgtccagcccaaggaacgagtggccgcacgtgcc
atcgacaagcctgctgctcacagcgataacctcttcggccaacaagagttggaaattgag
ggcaaaaagcggcgagccaaggatgagggagaaaaagtcaagaaaatgaagtttgaacaa
gaggccatcagcactaaacacgcagtattaaagcccaacaaagtccagttcatcgacatt
cttaaattgaagatggtaaacccagacatgcttgtcctgggctgcgtcaaggtctctctg
gaccatgagctggaggtggggttgccaggttgcctcactggcaatgtccagatcgcgcac
gtgtgcgatgcctacactaagagcttgggtgacaacatggattcaaacctggagtcagag
acgatcgctcctctgagtgagctgtacccaccagggactctggttccttgccgagtcatg
gaggttgtgcagggcaaaggcaactggtgcaggattaatctctcggtcaaccctcgtgat
gtcaacaaggaactcagtgcctccgctctcaggccaggcatgctactccatggctgtgtg
gccagcttagaggatcatgggtacgtggtggacattggcgtgtatggcacccaggctttt
ctcagcaaggctaaggcccaagcattggtgaactcgaagaaagcgggtcaaaacctgtcg
gtgggccagcctgtgtggtgcatcgttgagactgttcgaagccaaggccattcggttcag
ctctcggccagccctaccaaactgagtgcagccatcgccaacgagaagcatggctggaca
ctcgacaacctcctgcctggcgtgattctgtcgggcaccattgaaagggtggagcacgat
gggttggtggtggagttcctgggtttgtttgaaggcagcgtggattctttgcatctcagc
ccacaagagcgttacaagaagggccagaaggtgaaggtgtgcgttctgcacgtgatgccc
tcttccaagctgattgggctcagcaccctgccagcgctgctgcagccgggaaaaccagtg
tcggacccgatcggtttcaccatcggtgacgtgtttgaggactgtgctatctccaggttc
ctcacgggttcaggcatcttattggtgctgcccaacggatcttctgccttcgttcatgtg
aaacagatttccgacaaggaacggcagtttctaagcgaagactcgaagcacaaatgccgc
gtcataggcttcagccacgtggatcaagcggcaatcgcttcccttcggcagagtgtaatc
gaaggtccttttatgcgctacagcgatcttgagctcgggcagaccgtggagggcacggtg
ctggcggtgggcaaattcggcctgcaggttcgcctgacggatcacgtgcgcggcttcgtg
ccactcgcccacctcgcggacgttgctgtgctccacccagagaagaagttcagccccggc
aacgaggtcacctgcaaggtgctgaactgctgtgcggagaagcacaagctgatgctgacg
cacaagcgggcgctggtgcgctccaagctccgcccgctcgtctccttcgagagcgccgtg
cccggcacggtggctcacggcactgtggtgtgcgtgcgtgacttcggctgcatcgtgcgc
ttttacggcgacgtcaaggccctggcgcggcgctccgacctgggcctcgactttggcacc
gaccccacgcaggcgttctacaccgggcaggtggtgaaggctatggtcttaaattcttct
ccagccgaggagagaatgttggtttctctgtcggggacggtgagtgggaaggagacgcag
gatgctgggggccccgttcagcaaacaagcttcgccgtcgaagtgggcaagtgcgtggac
gtgcaggtgcgttgcaagtcggagaaggggctggacgtgactgtcatggattcaggagcg
ctgggcttcatgcccatgatgcacctctccgacaacgtgcacgtgtgccgactgctgctg
gaacttgtggagccaggcgacgtgatgagcgccacgtgtttcagcgagcgcaatggcaaa
attctactgacaaagaagcacgctctgcaggtggcgctgtccgggagcaatgtgccaaag
acactcggcgacttacaagctggtatgctgctagttggtgtgacgaggagaatgctgccg
tacggcgtgtcggtggagttcccctacgccctcaggggaatggcgttcaagaccgcgctc
tccgacgagtacgtggtgagctgcgaggagttctactcggtcgggcagacggtgctggcg
gctgtgacccgcgtggacgaggagaagagccacctggacatctctctccgagtctccgaa
tgcctggccgacgctgcgctcgaggggaccgcgctgctcagccaggccctgcaggaggtc
gtccaggctcgagccttgctcgccagcaaaggccgcgagtttcccaagccggggcagatg
ttgaaggcgacggtggaggaggtttccgccgataagtccgtggtgttcaaatcggagagc
gcaccaggcgtctcgctgaaggcaacggaacaccacgtggaaggccagcagttgaccgtg
gggcaggaggtgtccgcccgggtgctgtttgtggactttctcgcctccacggtgcacgtc
agcctgaagtccgagctgttgcccaagcgaaagaaaaaaaagcaaaaacagctgtgcgaa
ggctacgtttactttgccacggtgcaattcatcggcagcgacctggccgtcgcgtcggtg
gaagaaaactctcacctgattttcctgcccctggccaaccacctgaacgagatgctgcgc
cccaacttgggctggctgagggtgggggagaagctcaaggtcgtggtgaagtgcgccgac
cccgaggaacacgacggtgtcctggtagccgcgccggactccggccacttgggcaacagc
gctttcaggacgagagctcggatggcgtctgtgagtgaagagggcggcgaagtgaccgac
ggagcggacgcggtgaagggtcgggcgctgcgactcggcgatgtctacaagggcacggtg
aagtcgtcgcggggcatgcgcgccatggtcaccctgcccggcggaatcgtgggccgcgtg
cacgtgtcggagatccgggacgaggcaacgaccggacagaagccaacgatgtcgctcaag
gccggagagacggttgccgtcaaagtgattggtggccaggagatcaagacgcacaaatat
ttacccatcacgcatcagaatttagtaatacatttgccagagctcacaatgagacccagt
aaactgaacagtaataacaaggaagactactgcatccgatcagccaaggagtgccttgag
tcctaccaacccggacagactatcacctgctttgtcaacaagtaccaggaggatcggaaa
gccttgtgggtggacgtgaatgccgtggtcagtggacgtgtggagcaactcctcattagc
aacaagccgaaggtgttggataatcctctgcagaagtttcgcgtgggatgcgccgtgcag
gccaccgtggttacttgcaaggtggagcaggagttgctcagtctctcactctctggtgtg
tacgagctgtcgcctggcactttgacgctgggacgcgtcaagtgcattcagccgggcatc
ggcctgctgctgtcgctaccgctgggccacacgggcagggtctcgctcacggagctgaac
gactccttcgtgcagaagcccctggccgccttcgaggagggacagattgtgccgtgctgt
gtgctggagaacggaggcaagatgcgagtcatgctctcgctgcgcgattccagggtgaaa
ccgccgacgggcgatgaagaggcagtggtgaaggacaaggagctgtcatctgtggaggac
ctcacggtgggctctgtgatccgtggctacgtccacactattgtcaacaaccaagtcttg
gtcaacttgtcgtggtgcgtgatgggccggatctcactccgcaacctgtccaagtacttt
gtaagtgactcttcactcatggagaggcacattcacaagggcgggctcatctctgtgaaa
gtgctcagcgtcgacgcggagaccaagagggtggagctgtcttccctgccgaacgacacg
ggaggcaaggacttgttcccgggctcgatagggctgaggctgtggcggaagaatgacgac
aaagacaagactcgcaagaggaaggcggaggcggataccgccgagccggtccctgaggaa
aagaagaagaaaaagaggaaaacagaaacggagaaagcggaggagtgcacggacagcggc
gttgagatttacttccgagagggcggggatgacagtgaaaccgagaagaagggcagcgca
aaggcggagcgcggcgcagcctccctcgagcggctgcaggtgccgggctcattcagctgg
gacgcctctctcgcctccctgcaaacgggcattctgggagctcgcaacgggggaggcggc
attgacaccagcggcgacgaggatgacgccgacacagcgggccagcagaagaagaagcag
cggaagaacaggcaagaggccttcgccgagcgcaagcgcgaggagaaggagctggcgcag
ctggaggcgcggctggctgacccgtcgcgcgtgccgcagtcagtcgacgactttgaccgc
ctggtgctgagctcacccaacagctcgctcgtatggctgcagtacatggcgttccacctg
caggccaccgaggtggacagggcccgcgccgtggcggagcgagcgctcaagaccatctcc
ttcagagaggagcaggagaagctgaatgtgtgggtggcactgctgaacctggagaatctg
tacggagacgaggcttcgctgatgcgcgcgttcgagcgtgccgtgcagcacaacgacgcg
ctcaaggcgttccagcacctcgcgcagatctacatcggctcggacaagttccagcaagcg
gacgttctctacaacaagatgctgcgccggttccggcaggagaaagccgtgtggctggcc
tatggaagcttcctggttcagcgcggacagacggactcggcccgccgcctcatgcagcgc
gcgctcaagagcctgcccgaacgagaacacgtggacgtgatcgtgaagttcgcgcagctc
gatttccgctcgggtgacgtggagcacggagtggccgtgtttgagagcacgctgagcagc
tacccgaagcgcacggacatctggtccatctacattgacatgctggccaagcatggcacc
gcacagcagatccgggccgtgttcgaacgcgtcgtccacatgaacttctcgcccaagcgg
atgaagttcttcttcaaacgctacttggactacgagcgcaagcacggcgatgccgcgtct
gtgcagcgcgttcggcaaaaggccctggagtacgtggaggagaagagcagcgtcggggcg
aagcagtag
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