Lethenteron reissneri (Far Eastern brook lamprey): 133345964
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Entry
133345964 CDS
T09663
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133345964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133345964
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133345964
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133345964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF6165
Motif
Other DBs
NCBI-GeneID:
133345964
NCBI-ProteinID:
XP_061413111
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All DBs
Position
3:8235805..8269435
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AA seq
865 aa
AA seq
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MADKRKLQAEIDRCLKKVSEGVEIFEDIWQKHDRLFQVHNAANINQKEKYEADLKKEIKK
LQRLRDQIKTWLTSNDIKDKRQLIENRKLIELQMERFKVVERETKTKAYSKEGLGSAVKV
DPAQKEREEISQWLTNTIDNLNMQVDQFESEVESLSIVSKKKKSEKEKADRVEVLKRQLE
RHRWHVGKLETLLRMLDNQTVEVDAIRKIRDDVEYYADSSQDPDFEENEFIYDDINMDEI
GLAAVLATSPVSNSLNDDEVFNQSSSTPTSTTSCSPVPIPNENHENHHQDKRRSKSTDSE
SMQSPAKALLTKAHHATVGGTPVSPIIQNTSGRTLSKSESSAGGSGGSGGGSGSNSKIGA
SKSSTTNPASSQAPSGPAYSAAVSGVTPTTGASGGAGGLPAGSSPGSAGAAPPALSSSTS
GTTGGASSVWITSTNGPGGGAGGGSGSAWGLLGHGSGVWNSSAGVWALNGVAGGATSAGG
GSSSSSTSSIAGGPGGGGGGGSGGSGAVGSAPLSLAPGAGNAAQPRPGSANQAASAAATA
AAAAAASRQLNGANSYSSVVAESREDSPQVVNSDSPSSQPNVAPSPPLLKETPDAIAAPP
PASPGPSSSAVASVAQPSGPPTLESPDLTETKASSEMRNGPQSYGASPSPDHITKDSLSS
LKSMAEKAAAEAGLEGQMQSLHLTDRDLFVGPGRPPSPVTKEAHVQPLLGVCPLGATPLG
KDNVYQQGMLEASWRHMPHPSDAERLRHYLPRNPCPTPSYHHRVPPTHSDTLEFYQRLST
ETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEYEQGTYIYFD
YEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggcagataagcgaaagctacaagcggagattgatcgctgcctcaagaaagtgagcgaa
ggcgtcgagatttttgaggacatctggcaaaagcacgatcgccttttccaggtgcataat
gcagccaacatcaaccagaaggaaaagtatgaggctgatcttaaaaaggaaatcaagaag
cttcagaggcttcgagaccagatcaaaacatggctcacctccaacgacatcaaggacaaa
aggcagctaatagaaaaccgcaagctgatagagctgcaaatggagagattcaaggtggtg
gagcgtgagacgaaaaccaaggcctactccaaggaggggctgggctccgctgtcaaggtc
gacccggcgcaaaaggagcgcgaggagatcagccagtggctcacgaacaccatcgacaac
ctaaacatgcaggtggaccaatttgagagcgaggtggagtcgttgtcgatagtttccaag
aagaagaaaagcgaaaaggagaaggccgaccgcgtagaggttctcaagcggcagctggag
cggcaccgctggcacgtgggcaagctagagacgctgctccgcatgctggacaaccagacg
gtggaggtggacgccatccgcaagatccgcgacgacgtcgagtactacgcggactcgtcg
caggacccggacttcgaggagaacgagttcatctacgacgacatcaacatggacgaaatc
ggcctggctgcggttctggctacttctccagtcagcaacagcctcaatgacgacgaagtt
tttaaccaatcaagcagcactccgacctccaccacgtcatgttcgcccgtgcccatcccg
aacgagaaccacgaaaaccaccaccaggacaagaggaggagcaagtcgacggacagcgag
tcaatgcagtctcctgcgaaggcgctgttaacgaaagcgcaccacgcgaccgtcgggggg
acgccagtgtcgcccatcatccagaatacatctgggcggactctaagcaaatcggagagc
agcgcgggtggcagtggcggaagtggcggtggtagtggcagtaacagcaaaataggcgcc
agcaaatcatccacgacgaatcctgcgtcatcgcaggcgccgtcaggtcccgcgtactcc
gccgccgtttcgggcgtgacgccgacaaccggcgcgagcgggggtgctggcggcctgccc
gcgggatcgtccccggggtcggcaggggcggcgccgccggcgctgtcgtcgtcgacgtcc
ggcacgacgggtggcgccagctcggtgtggatcaccagcaccaacggccccggcggcggt
gccggcggcggcagcggcagcgcgtggggtttgttggggcacggcagcggcgtttggaac
tcgagcgccggcgtgtgggcgctgaacggcgtcgcgggtggcgcgacctcggctggcggc
ggcagcagcagcagcagcaccagcagcatagcgggaggtccggggggcggcggcggcggc
ggcagcggaggcagcggcgcggtgggcagcgcgccgttgtcgctggcgccgggagcgggc
aacgcggcgcaaccgaggccgggctcggcgaaccaggcggcgtccgcggcagcaactgca
gcggccgctgcagcggcgagcaggcagctcaacggtgccaacagctacagctccgtggtg
gcagagtcccgggaagactctccgcaggtcgtcaactcggactcgccgagcagccagccc
aacgtcgccccctcgcctcccctcttaaaggagacgccggacgccatcgcggcccctcct
cccgcgagccccgggccgtcgtcgtcggcggtggcgtcggtggcgcaacccagcggcccg
ccgaccttggagagccccgacctgacggaaaccaaggcgagctcggagatgcggaacggg
ccccagagttacggggcaagcccctcacccgaccatatcaccaaggactcgctgagctca
ctgaagagcatggcggagaaggctgcagcggaggctggactcgaggggcagatgcagtcg
ctccacctcacggacagagacctgtttgtgggcccgggccgccctcccagccccgtcaca
aaagaggcccacgtgcagccgttgctgggcgtgtgcccgctgggtgccactccgctcggc
aaggataacgtgtaccagcagggcatgctggaggcctcttggaggcacatgccacatccg
tccgacgccgagaggctcaggcactaccttccccggaacccgtgcccgaccccatcgtac
caccaccgcgtgccacccacccactcggacacgctcgagttctaccagcgactttccact
gagacactgttcttcatcttctactacctggagggcaccaaggcgcagtaccttgcggcc
aaggccctgaagaagcagtcgtggaggttccacaccaagtacatgatgtggttccagcgg
cacgaggagcccaagaccatcacggacgagtacgagcagggaacatatatctactttgac
tacgagaagtggggccagcgcaagaaggaagggtttacattcgagtaccggtacctggag
gacagggacctgcaatga
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