Lethenteron reissneri (Far Eastern brook lamprey): 133346090
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Entry
133346090 CDS
T09663
Name
(RefSeq) LOW QUALITY PROTEIN: cholesterol transporter ABCA5-like
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
133346090
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lrj02000
]
133346090
Transporters [BR:
lrj02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
133346090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
AAA_23
RsgA_GTPase
AAA_29
SbcC_Walker_B
AAA_16
AAA_30
ABC2_membrane
SRP54
AAA
Rad17
AAA_15
Motif
Other DBs
NCBI-GeneID:
133346090
NCBI-ProteinID:
XP_061413439
LinkDB
All DBs
Position
3:9122789..9174153
Genome browser
AA seq
1680 aa
AA seq
DB search
MGPEARPAVGIWGQTKALVYRNGLIKVRNKQQTLQELLIPLCFVLLLVLISEMNRHVELS
ESPPPPAVPLPLEFDHDVGYVADSDHARRVMYLVAAQLAKPVQEFPTESTLREDVATLHS
CGVVFNGSMEYRLLFPYNTVPSTDVAFDQMEMHCRSMDEVHSTRCPVNDYLESGFVSLQL
AIDSALIQLQTNVSAHALTSAMVQRMGRSRHTVVRTWPQLLASIYLAGAFAPFLSFLLLN
LVLEKEQGSRDLMRTMGLRTPALWLSWALVYGAMICLVSLVLAVVTRVTHIFDTSNTILM
FLLFLLYGLSLVAMALVLMAFFRKAKTASSVGSLLALIFCLLNIPVLLLWNSNAVLHWLL
SLFSPAAFALAVAQVVALEAGGSGAHFSNLLEGPNPLAVPLTMLLLDIAIYVGLAAALHR
LLPEAPASCRPSFFRLPRWRRSAANGGGGHPPLDVLDDVALGGPGHGGGEGREGDGICEA
VPSEMLGSEAIRIRNVSKTYRLKGTDVMALRGLSLNIYEGQITALLGHNGAGKTTLINIL
TGLITPSAGSVTIFGLRVDDRDELSALRTSCGFCPQSDILFSGLTAREQLRVFALLKPSV
AAAETEAEVSRVLSSTGLEKAADKQVQDLSGGQKRKLSLAAALLGNPRLLILDEPTSGMD
PVSRRRVWSLLLGGKRECVTLLSTHSMEEADALADWKAVLSQGRLKCAGSSLFLKTKFGV
GYRLTMCVGEECNPEEVTALVLSHVPSARLARRFGAELAYTLPFNDVRSFTGLFSVLDTR
TDLCVHSYGVSMTTLEEVFLRLWEESEMEQPVLADYSVFADAETAGDGQGARGDIANGDG
IASTSEDDSTSDLGSLHLLTYDPGNSGEAPRPGPLTGWPLWCQQLRAVAWLRVISYLREY
SSLVYLVVTPAIFIGFAIWLAWLGDRMDAHQPAALRLWPGLYLLGTKGGMETAARTRLLV
LTSAESGLSEATIGSLQSLEVQLDLSPGSRSHNLALNLTQQGPQGVTGQYNSTALHSLPV
LVNLLSNWVLRSLNGTGVITTWSQPLPRMNSSGFTDATLVPLAMFIGLGANWLPCYFIFD
IVRDRELQARSLMRISGLAPSAYWLGLASVDLASYSLLLLALLATAFGIGVGSLTQPGAA
LALIICLVGSAPATLLFTYVCSFLFSKMESVQTAWPLIAMLLALAPYLVVTLLESAGELY
GLATALHHVFALCDPLYVLIGNIYYVLQVYLRGKQRGAQPTLSDYFAWDSNIPITLLAPY
VMVGALWLALMFLERRPMGHRDVHDPVFCISGRRRRLVANTERPEGEDEDVAWERERVKR
ALHNHESPAMLVHSLRKEFGKSQSGCHCRSGRGKACVAVRNLSFMVERGEVLGLLGPNGA
GKTTTVELLAGELKPSAGQVVLGDGCARGAQLGLCPQVNPLWKKLTLAEHLSFYAAVRGL
RRDEARAATQGMISALALKEHAEKVTRKLSGGTKRKLCFALSMLGGPCQVLLDEPSMGMD
PKTKRFMWRAIGAAFRSSQRGAVLTTHYMEEAEALCHRVAIVVAGRLRCLGSIQHLKSKY
GGCYHLEVKVGEATVTGASLEQRVAEVQAHLASSFPGASLQDGFAGRLVYKVPREHVGSL
AEVFNKLEKAKLELGVEEYSFSQATLEQVFVEFVKEQSDTQLLLEPGEAEEVRWSDTSRA
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgggacccgaagcgcgacctgccgtgggcatttggggccagacgaaggccctcgtctac
aggaacggcctcatcaaagtgcgcaacaaacagcagaccctgcaggagctgctgatcccc
ctctgcttcgtgctgctgctcgtgctcatcagcgagatgaacaggcatgtggagctctcc
gagtcgcccccgccacccgccgttcccttgcccctcgagttcgaccacgacgtcggatac
gtggcggactcggaccacgcgcgccgggtcatgtacctggtggccgctcagctcgccaag
ccggtgcaagagttccccaccgagagcacattgagggaagatgtcgccaccttacactcg
tgcggcgtggtgttcaacggcagcatggagtaccgcctgctcttcccgtacaacaccgtg
ccgagcaccgacgtggcgttcgaccagatggagatgcactgccggtccatggacgaggtg
cactcgaccagatgtcccgtaaacgactacctggagtctggtttcgtgtcgctgcagttg
gccatcgactctgcgctcatacagttgcaaacaaacgtctccgctcacgccctgaccagc
gccatggtgcaacgcatgggccgcagccgtcacacggtcgtgcgcacctggccacagttg
ctggcctccatctacctggccggcgccttcgcccccttcctctccttcctgctgctcaac
ctggtgctggagaaggagcagggctcccgtgacctcatgcgcaccatgggcctccgcacg
ccggcgctctggctgtcgtgggcgttggtgtacggcgccatgatttgcctcgtgtcgctg
gtgctcgccgtggtgacgcgcgtcacgcacatcttcgacacgagcaacacgatcctcatg
ttcctcctgttcctgctctacggcctctcgctggtggcgatggcgctggtgctcatggcg
ttcttccgcaaggccaagacggcgagctccgtgggctctctgcttgcgctgatcttctgc
ctgctaaacattcccgtcctgctgctgtggaactcgaacgccgtgctgcactggctcctc
agcctcttctctcccgcggcctttgccctcgccgttgcacaggtggtggcgctagaggcc
ggagggagtggcgcccacttctccaacctgctggagggccccaacccactcgccgtaccc
ctcacgatgctgctgctcgacatcgccatctacgtaggcctcgccgccgcgttgcatcgc
ctgctgccagaggcacccgcatcgtgccgcccgtccttcttccggctgccgcgctggcgt
cgtagcgcggcaaacggcgggggggggcacccgcctctggacgttttggacgacgtggcg
ttggggggcccggggcacggcggcggtgaaggccgcgagggagacgggatctgcgaggcg
gtgcccagcgagatgctggggagcgaagccattaggattcgtaatgtcagcaagacgtac
cggctgaaaggaactgacgtcatggccttgagaggcctctccctgaacatttacgagggc
cagatcacggccctgctgggacacaatggagccggcaaaacaacgctcatcaacatcctc
accgggctcatcaccccctccgccggctcagtgaccatcttcgggctgcgggtggacgat
cgggacgagctgtccgcgttgcgcaccagctgcgggttctgcccgcagagcgacatcctc
ttctcggggctgacggcgcgggagcagctgcgcgtgttcgcgctcctcaagccgtccgtg
gcggccgcggagacagaggcggaggtgtctcgcgttctctcgtccaccggcctggagaaa
gcggctgacaaacaggtgcaggatctgagcgggggccaaaagaggaagctctccctggcg
gccgccctgctgggcaaccccaggttgttgatcctggacgagccgacgtccggcatggac
cccgtgtcgcgtcgccgcgtgtggagtctgctgctgggagggaagcgagagtgcgtcacg
ctgctcagcacgcactccatggaagaggccgacgcgctcgccgactggaaagccgttctg
tctcaagggcgtctcaagtgcgcgggctcctcgctcttcctcaaaaccaagttcggagtc
ggttaccgtctcacgatgtgcgtgggcgaagagtgcaaccccgaggaggtcacggcgctg
gtgttgtcccacgtgccgtccgcgcgcctcgcacggagattcggcgcagaactcgcctac
acgctgcccttcaatgacgtgcgcagcttcactggtctattctccgtgctggacacgcgt
accgatctgtgcgtgcacagctacggcgtctccatgacgaccctggaggaggtgttcctc
cgactctgggaggagtccgagatggagcagccagtactggcagattacagcgtgtttgcg
gacgcggagaccgccggcgacggccagggggcgaggggggacatcgccaacggcgacggc
atcgcgtcgacctctgaagacgattcgacgtccgacctgggcagcctgcacctcctgacc
tacgatcccggcaacagcggcgaggcaccgcgacccggccctctgaccggctggccgctg
tggtgccagcagctgcgcgccgtggcgtggctgcgcgtcatcagctacctgcgcgagtac
tcctcgctcgtctaccttgtggttacgcccgccatcttcatcggctttgcgatctggttg
gcctggttgggcgaccgcatggatgcccaccagccggcggcgttgaggctgtggcccggc
ctctacctcctgggcacgaagggtggcatggagacggccgcccgcacgcgtctcctcgtg
ctaacttccgcagagagcgggttgagcgaggcgaccattggatccctgcagagtctggag
gtgcagttggatctgagtcccgggtctcgttcccacaacctcgccctcaacctcacacag
caaggcccacagggtgtaactggccaatacaacagcactgccctgcactccctgccagtg
cttgtcaacctcctcagcaactgggttctgcgcagcctcaacggcactggggtcatcaca
acgtggagccagcccctgcctaggatgaacagctcgggtttcaccgacgccacgctggtg
ccgttagccatgttcatcggcctcggggccaactggcttccctgctacttcattttcgac
atcgttcgcgaccgagagctgcaggcgcgctcgctcatgcgcatcagcggactggcgccc
tcggcctactggctgggcctggcctccgtggacctcgcctcctacagcctcctgctgctg
gcgctgctggcgacggcgtttggcatcggcgtggggtcgctcactcagcccggcgccgcc
ctcgcgctgatcatctgcctggtgggctctgccccagccactttgctcttcacctacgtc
tgctccttcctcttctccaagatggagagtgtgcagaccgcgtggcccctcattgccatg
ctgttggcgctggccccgtacctggtggtgaccctgcttgagagcgccggcgagctgtac
ggcctggccaccgcgctgcaccacgtcttcgccctctgcgaccctctctacgtcctcata
ggcaacatttactacgtactccaggtttacttgcggggcaagcagaggggagcacagccc
accctctccgactacttcgcctgggactccaacatccccatcactttgctggcgccgtac
gtgatggtgggcgcattgtggctggcgctcatgtttcttgagaggagaccaatggggcac
agggacgttcacgaccccgtcttctgcatctccgggcgccggcgccgcttggtggccaac
accgagcggcccgagggggaggacgaggacgtggcgtgggaaagggagcgcgtgaaacgc
gcgctgcacaaccacgagagccccgcgatgctggttcactcgctgcgcaaggagtttgga
aagagtcagagtggctgccactgccgcagcggccgtgggaaggcgtgcgttgccgtcagg
aacctctccttcatggtggagcgaggggaggtcctggggctgctgggacccaacggggct
gggaagacgaccacagtggagctcttggccggagagttgaagcccagcgctggacaggtg
gtgctgggagatggctgtgcgcggggggcgcagctgggcctgtgcccccaggtgaaccct
ctgtggaagaagctgaccctggcggagcacctgtccttctacgcggccgtgcgggggctc
cggcgggatgaggcacgcgccgccacgcaggggatgatatcggcattggcgctgaaggag
cacgcggagaaagtgacgcggaagctgtcgggcggcaccaagcgcaagctatgctttgct
ctcagcatgctgggaggcccctgccaagtgctgctggatgagccatccatgggcatggat
cccaagaccaagcgcttcatgtggagagcgatcggcgctgcattccggagcagccagcgc
ggcgccgtcctcaccacgcactacatggaggaggcggaggcgctgtgccaccgcgtcgcc
atcgtggtggccggccgcctccggtgccttggttcgatccaacacctgaagagtaagtac
ggtgggtgctaccacctggaggtgaaggtcggagaggctacggtgaccggcgcgtcgctg
gagcagcgcgtggccgaggtgcaggctcacctggcgagcagcttccccggggcctcgctg
caagatgggtttgccgggaggctggtgtacaaggtgccgcgtgagcacgtgggatcgctg
gccgaggtgttcaacaagctggagaaagccaagctggagctcggggtggaggagtacagc
ttttcacaggcaacactggagcaggtgttcgtggagttcgtgaaggagcagagcgacacc
cagttgctcctggagccgggcgaggcggaggaggtgcggtggagcgacacgagccgggcg
tga
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