Lethenteron reissneri (Far Eastern brook lamprey): 133346100
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Entry
133346100 CDS
T09663
Symbol
DDX42
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133346100 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrj03041
]
133346100 (DDX42)
Enzymes [BR:
lrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133346100 (DDX42)
Spliceosome [BR:
lrj03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133346100 (DDX42)
Complex B
133346100 (DDX42)
Complex C
U2 SnRNP specific factors
133346100 (DDX42)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
133346100
NCBI-ProteinID:
XP_061413472
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All DBs
Position
23:16263705..16276372
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AA seq
794 aa
AA seq
DB search
MNWNKGGPGQKRGFGFGGFAMGGAKKEEPKQLPNDLHTSFVSSSTSGGYGNPQTAPNTSF
FKIGSKRPTFDDESSYFEEDEEEDSSSKYSGLPYIPAENSPSRKQLNSDSDDDPLDAFMA
QVENQAARDMKALEEKEVTKKDDKGVRDDIEEEDGQEAYFRYMEENPTAGLLPVDEEDPM
DYDSDGNPIPPEKNKVIDPLPSIDHSEIEYEPFDKNFYVEHEEISSLGASEAHELRNKLN
LKVSGAAPPKPCSSFGHFGFDEQLLNLIRKSEFTQPTPIQCQGIPIALSGRDIIGIAKTG
SGKTASFIWPMLVHIMAQKELKPGDGPIGLICVPTRELCQQINVECKRFGKAYNLHSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIANHVRPDRQTMLYSATFRMRVEKLARDILIDPIRVVQGDIGEANEDVTQRVEIFSN
GAAKWNWLCSHLVEFTSSGSVLIFVTRKDNSEELSNDLEQEGFQVGLLHGDMDQSERNKV
ISDFKKKVIPIMVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRVGRTGRAGEKGTAFT
LMTHKDMNFAGDLVRNLEGANQHVHKELMDLAMQNPWFRKTRFKGGRGRKLNVGGGGLGY
RERPGLGSESSGSGGSMKSITSLPQSFEPIKPPTGAMGDRLSSMREAFKAQYKSQFVAAS
PGVSTKAQSSSSESASGGASSASGGLSGWKSAGSLQSVPSGTHPAEVSEKSNSPPKSFAV
PADPPRRKKTRWDK
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggaggccctggccaaaagaggggatttgggtttggaggctttgcc
atgggcggcgcgaagaaggaagagcctaaacaacttccaaacgacttgcatacgtcgttt
gtatcgtcttccacttctggaggatatggaaaccctcagactgcaccaaacacatcattc
ttcaaaatagggtccaagcggccaacatttgacgacgaaagctcgtactttgaagaggat
gaggaggaagattcttcatcaaagtattctggcctgccttacatccctgcagagaactct
ccctcccgcaagcagcttaactctgacagtgatgatgacccactggatgctttcatggcc
caagtggagaatcaagctgcaagagacatgaaagctttggaggaaaaagaagtcaccaag
aaagatgacaagggtgtaagagatgacattgaagaggaggatggacaagaagcctacttc
cgctacatggaggagaaccccaccgctggactgctacctgttgacgaggaagaccccatg
gactatgacagtgatgggaacccaattcctccagaaaagaacaaagtcattgatcctctg
ccttccattgatcactcagagatcgagtacgaaccatttgataagaacttttatgtagag
catgaagaaatttcatcacttggtgcatcagaggctcatgaactgaggaacaagctcaac
ttaaaggtgtctggtgctgctcctcccaagccttgctcaagttttggtcactttggcttt
gatgaacagctccttaatctgattcgcaaatcagagttcactcaacccacacctatccag
tgccagggcatccccatagcgctgagcggccgagacataatcggtatcgcaaaaaccggc
agcggaaaaacagcctcgttcatttggccaatgctggtacacatcatggcacagaaagaa
ctgaagccaggagacggtccaattggtctcatctgcgtacccacccgggagctctgtcag
cagataaatgtggagtgcaaacggttcggaaaggcgtacaacttgcactctgttgctgtg
tacggtggtggcagcatgtgggagcaggcaaaggcgctgcaggagggtgctgagatcgtg
gtgtgcactcccggccgtttgattgaccatgtcaaaaagaaggcgacaaatcttcaacgg
gttacctacctggtgtttgatgaagccgaccgcatgtttgacatgggatttgaatatcaa
gtccgttcaattgccaaccatgtccgcccagacagacaaacaatgctctacagtgccacg
ttcaggatgagggttgaaaagttggctcgggatattttgattgaccccattcgagtggtg
caaggagatatcggagaggccaacgaagatgttacgcagagggtagagatcttttccaat
ggagcagcaaagtggaactggctatgcagtcatctggtggagttcacctccagtggaagc
gtgctcatctttgtcacacggaaggacaactctgaggaactgtcaaacgacttagagcag
gagggcttccaggttgggctgctgcacggagacatggaccagagtgagagaaacaaggtc
atctctgacttcaagaaaaaggtcataccaatcatggttgccacagatgttgctgcccgt
gggttggacattccttcaatcaagactgtggtgaattacgatgtggcaagagatattgat
acacacacgcacagagtaggaaggacaggcagagcaggcgaaaagggaacagcgttcaca
ctaatgacccacaaagacatgaactttgccggggatctggtgagaaacctggaaggtgcc
aaccagcatgtccacaaggagctaatggacctagccatgcaaaatccttggtttaggaaa
acgcgcttcaagggtggtcgcggtcggaagctcaacgtgggtggaggtggcctgggctac
agggagaggcctggccttggctcagagtcttcaggttcaggtggcagcatgaaaagcatc
acaagtctgccacaaagttttgaacccataaagccacccacaggagccatgggtgacagg
ctgtcttccatgagagaagccttcaaggctcaatacaagtcacagtttgtggcagcgagt
cctggggtatctacaaaagcccagagtagcagcagtgagagtgcaagtggaggtgccagc
tctgccagtggggggttgagtggctggaagagcgcgggcagcctgcagagtgtcccttct
ggcactcatcctgccgaggtgtccgaaaaaagcaactcaccccctaaaagctttgcggtc
cctgctgatccgccaaggcgtaaaaagactagatgggataagtaa
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