Lethenteron reissneri (Far Eastern brook lamprey): 133346116
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Entry
133346116 CDS
T09663
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04510
Focal adhesion
lrj04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133346116
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133346116
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lrj00536
]
133346116
Glycosaminoglycan binding proteins [BR:
lrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133346116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
133346116
NCBI-ProteinID:
XP_061413518
LinkDB
All DBs
Position
23:16746778..16794594
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AA seq
1373 aa
AA seq
DB search
MASGVHPEPRVHLASRDPGVIVETRERREGKVPRGRDGEPGTPGNPGMAGPPGPPGPPGL
GGNFAAQMAGGFDEKSGGGAQMGALQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEPGEPG
PSGGLGPRGPPGPAGKPGDDGEAGKSGKPGERGPAGPQGARGFPGTPGLPGIKGHRGYPG
LDGSKGDAGAAGAKGESGASGENGAPGPLGPRGLPGERGRPGASGPAGARGSDGLPGPAG
PPGPTGPSGSPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGAAGASGPSGSPGNPGTDG
LPGAKGSSGSPGIAGAPGFPGPRGAPGPQGATGPLGPKGQQGDPGVHGFKGEPGPKGEPG
PAGLQGPPGPAGEEGKRGARGEPGAAGPGGPPGERGGPGNRGFPGQDGLPGPKGAPGERG
PPGAAGPKGSNGDPGRPGEAGLPGARGLTGSPGSPGSEGKPGPQGPPGEDGRPGPPGPQG
ARGQPGVMGFPGPKGASGEPGKPGEKGIPGAAGLRGLPGKDGETGPSGPPGPAGAVGERG
EQGPPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGQPGQAGPRGERGFPGERGASGPQG
LQGSRGLPGTPGSDGPKGATGPSGPSGAQGPPGLQGMPGERGTAGASGPKGDRGDAGEKG
PEGAPGKDGSRGLTGPIGPPGPSGSAGDKGEAGPPGPSGPAGTRGSPGERGETGPPGPAG
FAGPPGSDGQPGAKGEQGESGQKGDAGAPGPQGPAGSPGPQGPNGVPGPKGARGAQGPSG
ATGFPGAAGRVGPPGPNGNPGPPGPPGPGGKDGPKGIRGDSGPAGRPGEPGLQGASGPPG
EKGEPGEDGPSGPEGPPGPMGLAGQRGIVGLPGQRGERGFSGLPGPSGEPGKQGSPGPSG
ERGPPGPNGPPGLSGPPGEQGRDGNPGSDGPPGRDGSSGQKGERGENGSPGQPGAPGAPG
APGPVGPTGKNGERGESGPQGPIGPPGPAGARGLPGPQGPRGDKGENGEHGERGMKGHRG
FTGLQGLPGPPGSSGDQGAAGSLGPAGPRGTPGPTGPPGKDGSNGLPGPIGPPGPRGRTG
ETGPAGPSGPAGLPGPPGPPGPGMDMSGMSMMGSQEKAPDPMRFYRGDQASADLRQHDAE
VDATLKSLTNQIDSIRSPEGSRKNPARTCRDLKLCHPEWKSGDYFIDPNQGCTLDAIKVF
CNMESGETCVYASPQNVPRKSWWTNKSKDRKHIWFGETMNSGSQFNYGDDSLPPNTAAIQ
MTFLRLLSTEASQNITYHCKNSIAYMDEQAGNLKKALLLQGSNDIEIRAEGNSRFTYNVL
EDGCTKHTGDWGQTVLEYRTQKTSRLPIVDIAPLDIGGVDQEFGVDIGPVCFL
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaggggtccacccggagcccagggtccacctggcgagcagggatccaggggtg
atcgtggagacaagggagagaagggagggcaaggtccctcgtggcagggatggcgagcct
ggcactcctggaaaccctggcatggccggacccccaggccctcctgggccccctggcctt
ggtggaaactttgctgcccaaatggccggaggctttgatgagaagtctggaggtggtgct
caaatgggagctcttcaaggaccaatgggacctatgggaccaaggggacctccagggcct
tcaggctcacctggcccacaaggattccagggctcccctggagagcccggcgagcctgga
ccttctggagggcttggcccacgaggacccccaggcccagctggaaagcccggcgatgat
ggcgaggctggcaagtcaggaaaaccaggtgaacgtggtcccgcaggaccgcagggtgct
cgtggtttcccaggaacccctggccttccaggcattaagggacaccggggttaccctggc
ctagatggttctaagggtgacgctggggctgctggtgccaagggtgaatctggtgcttcc
ggtgagaacggagcccctgggcccttgggtccacgtggcctgcctggtgagagaggtcgt
cctggtgcctctggtcctgctggagcacgtggctccgatggcctccctggtcctgctggc
cctcccggccccactggtccatctggctcccctggttttcctggagccccaggtgctaag
ggtgaagctggtcctaccggagcacgtgggccagaaggtgcccagggctctcgcggagag
cccggtgctgctggggcttctgggccgtccggctcccccggtaaccctggcactgatgga
cttcctggagccaaaggatcatctggttcgccaggtattgctggtgcccccggattccca
ggcccccgtggagctccagggccccagggtgcgactggccctcttggccccaagggacag
cagggtgacccaggtgttcatggattcaagggagagcctggccccaagggcgagcctggc
cctgccggtcttcaaggtccacccggcccagctggagaggaaggcaagcgcggtgctcgt
ggagaacccggagcagctggccccggtggcccacctggcgagagaggcggccctggaaac
cgtggtttcccaggacaggatggccttcccggtcccaagggtgcccctggtgagcgcggt
ccccctggcgcagctggtcccaagggctccaacggtgatcctggtcgccctggcgaagct
ggcctccctggagctcgcggtcttactggcagccctggaagccctgggtctgaaggaaag
cctggtcctcagggtccccctggtgaagatgggcgacctgggcccccaggtccccaggga
gctcgtggacaacccggcgtcatgggcttccctggacccaagggtgcatctggagagcct
ggcaagcctggcgagaagggcatccctggagccgctggcctgaggggtctgcctggcaaa
gatggagagaccggcccatctggaccacctggcccagccggcgctgttggcgagagagga
gagcaaggtcccccaggtccctctggcttccagggtctgcctgggcctcccggtccccct
ggtgagggtggcaagcctggtgaccagggtgttcccggagaggctgggcagcctggacag
gccggccccagaggagagcgtggcttccctggtgagcgtggcgcttctgggcctcaggga
ctccagggaagccgtgggcttcctggcactcctggctctgatggccccaagggcgccacc
ggtccttcaggcccatctggggctcagggaccacctggcctgcagggcatgcctggggag
cgcggcacagctggtgcttctggtcccaagggagacagaggtgatgctggagagaaagga
ccggaaggtgctcctgggaaggatggttcacgaggcttgactggtcccatcggtcctccc
ggcccatcaggcagtgctggtgacaagggtgaagccggacctcctgggcctagtggccct
gctggcacacgtgggtctcctggcgagcgtggagagaccggtcctcccggccctgctgga
ttcgctggccctcctggttcagatggacaacccggtgccaaaggagagcagggagagtcg
ggtcagaagggagatgccggtgcccctggtcctcagggtcctgcgggctcccccggtccc
cagggtcccaatggcgttcctggtcccaaaggtgcacgtggcgcacaaggtccatctggt
gctactggattccctggagctgctggcagagtcggcccacccggccccaacggcaaccct
ggtccccctggcccacctggcccaggaggcaaagacggacccaagggaatccgtggagac
tctggccctgctggccgccctggcgagcctggactgcagggagcctctgggcctcctggc
gagaagggcgagcccggcgaggatgggccctctggccctgaaggtcccccaggccccatg
ggtctcgcaggccagcgtggtattgttggtttgcccggccagcgtggtgagaggggcttc
tccggcctccctggcccatctggcgagcctggtaagcaagggtcccctgggccatctgga
gaacgagggccccctggccctaatggcccacctggcctgtctggcccccctggcgagcag
ggacgtgatggcaatcctggctctgatggtcctcccggccgtgatgggtcttctggacag
aagggtgagcgtggagagaatggctcgccaggacagccaggtgcacccggtgccccagga
gcccccggaccagttgggcctaccggcaagaacggcgagaggggagagtcgggtcctcaa
ggcccgataggtccccctggcccagctggggctcgtggtctgcctggcccacaaggtcct
cgtggtgacaagggtgagaacggcgagcacggtgagaggggcatgaagggacacagaggc
ttcaccggtctccagggtctgcctggtcccccgggttcatctggtgaccaaggtgctgct
ggttccctgggccctgctggtcctcggggtactcctggccctactgggcctccaggcaag
gatggctctaatggtctccccggccccatcggtccccccggcccacgtggtcgcactggt
gaaaccggccctgctggtccatctggtcccgctggcctcccaggtcctcctggtccacct
ggccctgggatggatatgtctggcatgtccatgatgggatcccaggagaaggccccggat
ccaatgcgattctaccgtggcgatcaggcctcagctgatctgaggcagcacgacgctgaa
gttgatgccactctcaagtcgctcaccaaccagattgacagcatccgcagccccgagggc
tctcgcaagaacccagcacgcacttgccgggacctgaagctctgccaccccgagtggaag
agtggtgactacttcatcgatcccaaccagggctgcactctggatgccatcaaggtgttc
tgtaacatggagtcgggcgagacctgcgtctatgccagcccacagaacgttccacgcaag
agctggtggaccaacaagagcaaggaccgcaagcacatctggttcggagagaccatgaac
agcggttcacaattcaactacggcgatgacagcctgccaccaaacacagcggccatccag
atgaccttcctgcgcctgctgtccaccgaggcttctcagaacatcacgtaccactgcaaa
aacagcattgcctacatggacgaacaggccggcaatcttaagaaggcgcttctgctccag
ggctccaacgacatcgagatccgcgccgagggcaattctcgctttacctacaatgtgctg
gaggatggatgcacgaaacacacaggggactggggccaaacagtcttggaatacagaaca
cagaagacatcccgcctgcctatcgtcgatatcgctcctctggatatcggtggtgtggat
caggagttcggcgtggacatcggcccagtctgcttcttgtaa
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