Lethenteron reissneri (Far Eastern brook lamprey): 133347337
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Entry
133347337 CDS
T09663
Symbol
TARBP1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lrj03016
]
133347337 (TARBP1)
03036 Chromosome and associated proteins [BR:
lrj03036
]
133347337 (TARBP1)
Enzymes [BR:
lrj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
133347337 (TARBP1)
Transfer RNA biogenesis [BR:
lrj03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
133347337 (TARBP1)
Chromosome and associated proteins [BR:
lrj03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133347337 (TARBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
133347337
NCBI-ProteinID:
XP_061415509
LinkDB
All DBs
Position
25:complement(16509851..16572553)
Genome browser
AA seq
1746 aa
AA seq
DB search
MSTVLASCLLRCLGSLPPARVLEELTWGAEELPQPEQVEALLHVVRALAPEQKKEPPGPH
GQPTESEGLDGDQGSQGHVGNPRGEVDAACPIVVDPHLASAVDKLVLSSCLPALCRIQTE
DAWSWTEPLPQGDREVVARRQTQKRLLHLLCRLLARCLRLGGDASGELVVARCLADIHAH
NDEKASGWAPRGDAGVPLGGSGGTAAHGGGVDTLDVHVAVELLCYVVRSLGPRAVSGATL
RVVSQALAVSEEALATRALSRLVPALLAAQRDREAAAGLLRTLWGDLAEKRMDDTARSPS
SSVSRALLFLCTMSDCVLPTSDPHGERSAKAAQGGGEDRATAPDARSQGLVDLRTSAAFW
RTLQDGLRHAMPLSRKRAVFLLKRAVDVSESLSRDVTCSDDDDRDGVPVFWWSAEAAPAL
LPVWESYILVLETLEENQLHVVKPVLPRLRALVEATVAPGAGRPRAALASSWLCVALGRV
FDSENKMVLREGVKLCLSLDVTRRPSLGQPFLEFICGPLMDALLDINLYQRCAGQPIGSC
PAIGCLLETFLPSCAAALPVQRRGAFLLQALSGIVHRHWSTVPLLFLSRALAAVPACPAW
GPEGLLVLREVVRCVLTTQQVLLRGAAQCFLLQAAVRLTDSSRVSLGDVLALLACVREDE
ALGRGTTLWAQVCEWLRVNDSEFAPCDVVGAAPPAASATALNRFTLHSIGTFLKVPADEA
GGEGALLPDPQESHRVALTILLTADVDAGAPPRSDCSRPGEAEPLAEFLAPLTDTLRRLG
SHAYLPRAKADRALLLLLALLRKTEPRGGAEHAGNGTDTVRSVLRDAAQACAEGLLQYLL
RQLTYETEQERDLERADLHLDVLTALVRVLGEGPPGVAPFLVDFISRLVRASLETLQGRP
EEAQTAPQLLQRAVAAASLAWTCGVVAATPDLRRGCRAALEAAARHMTSAPLNQTLARPT
GTLAARPEDGGAGGRGWGRVAARFIGDQWRCHYHTLSGREDPARTTLMPLLRGCLEALAL
LPADSALAVLRCLQPLLPRMCDDREGGDDVEGATEEEASEARLGLCEQALQLAWKTVRDL
GNDPQAFWPALGAFVRAAFARRLLALRVDDPVAGRLAGALAQLSGELVRMAETKLGVFNV
LVTHCCQTWLPPYGGPPEGGEEASSVEDASVEDACSSALNHVTLLAEAVLFGPVFRKEQR
VLNDANSFVEKLGEGCAANAVVACSESKDDYMVRVTALGFLHSLNPANPTQAKLSRAVLL
ALLEKDRAMAAGKARCFANSDQHRARNRLWQAVLLLLPSQGPDEVERVFARACAATADDN
QPSVAYLLEWALVLALNRRPHLLGDLVAALAYDPEKNKSCVCSLLSVLAHFPTVAASNSD
KQDAGLRCLRAVLPWCMSHSFLVRLYALLTLGRVWGAVCAPGVAERPAEPADGELRALAP
LVEVCLRGAACMPAAGNIGRNWQKLQQHFFFRTFEPLLDYSVETIFWTFPRLSQLSDDEW
LWVGRFEALPWRRHAWPGAPPLANPRRELEAVQDTAWVLRERGSVTQDTDGVGDGDVQKK
FVSWRGGLSDPDLRGATLQEQRSARLGPPGGGLLVVASLVDKSTNLGGLCRTCEILGASA
LVLGGRHHVTDRQFQALSVTAEQWLPILEVKPHALAAFLQEKKEDGYSIVGAEQTANSHD
LTAFRFPARTLLLLGNEREGVPAGLLQQLDACVQIPQLGVVRSLNVHVSGALLVWEYARQ
HLLCPR
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgtcctggcctcgtgcctgctgcgctgcctgggttccctgccgcctgcgcgg
gttttggaggagctgacgtggggcgcggaggagctgccccaacccgagcaggtggaggcg
ctcctccacgtggttcgagctcttgctcccgagcaaaagaaggagcccccaggaccccac
ggacagccgacggagtctgagggactcgatggagatcagggcagccaggggcacgtcggg
aacccgcggggtgaggtggacgcggcctgccccatcgtggtcgatcctcatctggcctca
gcggtggacaaattggtcctgtccagctgcctcccggccttgtgcaggattcagacggaa
gacgcgtggtcctggacggagccgctccctcaaggcgaccgcgaggtggtggcacgccgg
caaactcagaagcgcctcctgcacctgctgtgccgcctgctcgcccgctgcctacgactc
ggtggcgacgcctccggggagctcgtcgtcgcacgctgcctcgcggacatccacgcgcac
aacgatgaaaaggccagcgggtgggcccctcggggggacgcgggcgtcccgctaggtggc
tcgggaggaacggcagcgcacggcggcggagtcgacaccctggacgtgcacgtcgctgtg
gagttgctgtgctacgtcgtccgctcgctcgggccccgagctgtctccggcgcgacgctt
cgtgtcgtctcgcaggctctggcggtgtcagaagaagctttggccaccagggccctcagc
cgtttggttccagcgctgcttgccgcacagagagaccgcgaggctgcggccggcttgctg
aggacgctgtggggcgacctggcggaaaagcgcatggacgacaccgcccgcagcccctcc
tcctccgtgtctcgggcgctgctcttcctgtgcacgatgtccgactgcgtgctgcccacg
agcgatccccacggcgagcggtcggcgaaggcggcgcagggcggcggcgaggatcgggcg
acggctcctgacgccaggtctcagggcctcgtggatttgcgaacgtcggccgccttctgg
cgcacgctgcaggacgggctgcggcacgcgatgccgctgagtcgcaagcgagcggtgttc
ctgctcaagcgcgctgtggacgtgagcgagagcctctcgagagacgtgacgtgctccgat
gacgacgatcgtgacggtgttcccgtgttctggtggtcggcggaggccgcgccggccctg
cttcccgtgtgggagagctacattctcgtcttggagacgctggaagagaaccagctccac
gtggtgaagccggtgctgccacgactgcgcgcgctggtggaggcgacggtggcgcctgga
gcagggcgaccgcgagcggcgctcgcatcgtcgtggctgtgcgtggcgctgggccgcgtg
ttcgacagcgagaacaagatggtgctgcgtgagggcgtcaagctgtgtctctcgctggac
gtgacgcgacgaccctccctggggcagccgtttctagagtttatttgtggcccactcatg
gacgctctcttggacatcaacctgtaccagagatgtgcggggcagcccatcggatcgtgt
ccggccatcggctgtctcctggagacgtttctcccttcttgtgctgctgctttgcctgtc
cagaggagaggcgcgttcctgctgcaggcgctgagcgggatcgtgcaccgccactggagc
accgtgcccctcctcttcctgtcacgggccctggccgccgtcccagcgtgccccgcgtgg
gggcccgagggccttctcgtgctcagggaggtggtgcgctgcgttctgacgacgcagcag
gtgctcctgcggggcgccgctcagtgcttcctgctgcaggcggccgtgcgcctcaccgac
tcgagtcgcgtgagcctgggcgatgtcctggcgctgctggcgtgcgttcgtgaggacgag
gccctgggccggggcaccaccctctgggctcaggtgtgcgagtggctgcgtgtgaacgac
tcggagttcgcgccctgtgacgtggtgggtgccgcccctcccgcagcttcagcgaccgct
ctgaaccggttcacgcttcactccatcggaaccttcctcaaagtgccggcagatgaagca
gggggcgagggggcgctgctgcccgacccgcaggagtcgcaccgcgtggcgctcacgatc
ctgctcactgctgacgtggatgccggcgctccgcctcgcagcgattgctctcggcctggc
gaggctgagccgctggctgagttcctggcgcccctcacggacacgctgcgacggctgggc
tcgcacgcctacctgccccgggccaaggccgaccgcgctctgctgctgctgttggcgctg
ctgcggaagactgaacccaggggcggagcggagcatgctgggaatggaacagacacggtg
cgctccgtgctgcgtgatgcggcgcaggcctgcgccgagggcttgttgcagtacctgctg
cggcagctcacctacgagacggagcaggagcgtgaccttgagcgcgctgacctccacctg
gacgtgctcacggccctcgtgcgggtcctcggcgagggccctccgggggtggcgccgttc
ctcgtcgacttcatctctcgcctcgtccgcgcctcgctcgaaaccttgcagggacgccct
gaggaggcgcagaccgccccccaacttctccagcgagcggtggccgcggcgtccctggcg
tggacgtgcggcgtagtcgccgcgacccctgacctccggcggggctgccgtgccgctctg
gaggccgcggcgcgccacatgacctccgcgcccctcaaccaaacgttggcgcggcccaca
ggcacgctcgccgcacggcctgaagacggcggcgccggcgggcgtggctggggccgcgtg
gccgcccgtttcatcggcgatcagtggcggtgccactaccacacgctgagtggccgagag
gacccggcgaggaccacgctgatgccgctgctgcgcggctgcctggaggcgctggcgctg
ctgcccgcggacagcgcgctcgccgtgctgcgctgcctgcagccgttgctgccccggatg
tgcgacgacagggagggcggcgacgacgtcgagggggcgacggaggaggaggcgagcgag
gcccggttgggcctgtgcgagcaagccctgcagctcgcctggaagacggtgcgcgacctc
ggcaacgacccgcaggcgttctggccggcgctcggcgccttcgtgcgagcggcgttcgct
cggcggctgttggctctccgcgtcgacgaccccgtcgcagggcggctcgctggcgccctg
gcccagctgtcgggcgagctcgtgaggatggccgagaccaagctgggtgtcttcaacgtc
ctcgtcacgcactgctgccaaacatggctgccgccctacggaggaccccccgagggaggc
gaggaggcatcctccgtggaggatgcctccgtggaggatgcctgctccagcgcgctcaac
cacgtgaccttgctggcagaggccgttctttttgggcctgtcttcaggaaagagcagcgg
gtgttgaacgacgcaaactccttcgtggagaaactgggcgagggctgcgccgccaacgcc
gtcgtggcgtgcagcgagagcaaggatgattacatggttcgagtgacggccctgggcttc
ctgcacagcctgaacccagccaacccaacacaggcaaagctcagccgcgccgtgctgctc
gcactgctggagaaggaccgggcgatggcggcggggaaggcgcgctgcttcgccaactcg
gaccagcaccgcgcgcgcaaccggctgtggcaggccgtgctgctgctgctgccctcgcag
ggcccggacgaggtggagcgcgtgtttgcgagggcgtgcgcggcgacggcggacgacaac
cagccgtccgtggcctacctgctcgagtgggcgctcgtgctcgcgctcaaccgacggccg
cacctcctgggcgatctcgtcgccgccctcgcctacgacccggagaaaaacaagagctgc
gtctgcagcctgctctccgtgctcgctcacttcccaacggtggccgccagcaactcggac
aagcaggatgccggtctccgctgcctgcgcgccgtgctgccctggtgcatgagccacagc
ttcctcgtgcgactctacgccctgctcacgctgggccgcgtctggggggcggtctgcgcg
ccgggagttgccgagaggccggctgagccggccgacggggagctgcgggcgctggcgccg
ctggtggaggtgtgcctgcggggcgccgcctgcatgccggccgccggaaacatcggcagg
aactggcagaaactgcaacagcacttcttcttcagaaccttcgagccgctgctggactac
agcgtcgagaccatcttctggaccttcccgcgcctctcgcagctcagcgacgacgagtgg
ctgtgggtgggccgcttcgaggcgttgccgtggcgacggcacgcctggcccggcgcgccg
ccactcgccaaccctcgccgggagctggaggccgtgcaggacacagcctgggtgctacgg
gagagaggctcggtgacgcaggacacggatggtgtcggtgacggtgacgtgcagaagaag
ttcgtgtcgtggcgcggtggcctctccgacccggacctgcggggtgccaccctgcaggag
cagcgctcggcgcgacttggcccgccgggcggcggcctcctcgtcgtggcgtcgctcgtc
gacaagtccaccaacctgggcggcctgtgtcggacttgtgaaatcctgggcgcgtcggcg
ctggtgctgggagggcgacaccacgtgaccgaccgccagttccaggccctgagcgtcacc
gccgagcagtggctgcccatcctcgaggtgaagccgcacgcgctggccgccttcctgcag
gagaagaaggaggacggctacagcatcgtgggcgcagagcagacggccaacagccacgac
ctcacggccttccgcttccccgcacgcacgctgctgctgctcggtaacgagcgcgagggg
gtgcccgcggggctgctgcagcagctggacgcgtgcgtccagatcccgcagctcggggtc
gtgcgctcgctcaacgtgcacgtcagcggcgccctgctcgtgtgggagtacgcgcgccag
cacctgctgtgcccgcgctga
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