Lethenteron reissneri (Far Eastern brook lamprey): 133347436
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Entry
133347436 CDS
T09663
Symbol
HBS1L
Name
(RefSeq) LOW QUALITY PROTEIN: HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133347436 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133347436 (HBS1L)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133347436 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
133347436
NCBI-ProteinID:
XP_061415663
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Position
26:620474..639883
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AA seq
701 aa
AA seq
DB search
MSRHRSVRGYNYDEDFEEDDLYGQSVEDDYGVSPATAAQFMYQRADFQLANFVDEPLKEE
DEECEEQPPAKSNTLGLSDIDKARLHSCLEEMRNIAGDAFPEPVMVQAVLNSNFEMEKAL
DSLFLQSDKTRPEVKEQRLPRSSRAGKRGEASSVSKAEXDIVPKVAKMTISGKQTIGFDA
SIGSPNGQISNTSNKESHSESVQSTSSSAMCTKQTLLSEGPTLVSNLKLSPKPPAKVGLH
TEDTPTGTGTPGKQAGKNRTKLDVKSELEKRQGGKQLINLVVIGHVDAGKSTLMGHLLYL
LGNVNKRAMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGLTKFESKTKLVTLM
DAPGHKDFIPNMITGAAQADVALLVVDSITGEFEAGFEAGGQTREHALLVRSLGVTQLAV
AINKMDMLNWSKERFEEITSKLGQFLKQAGFKESEVTYIPTSGLSGENLAMRSKEEKLTS
WYSGPCLLDCIDSFRPPQRPVDKPCRLCVSDVFKDVGAGFSVAGKVEAGYLQTGDRLVVM
PANEMCTVKGITLHDEPMDWAAAGDHVTLNVTGMDMIKVGVGSVVCDPKEPIRASTRVRA
RILIFNIDLPITRGFPVLLHYQTVSEPAVIKKLISVLHKSTGEVVKTKPRCLQKGQNAMV
ELQMQRPVCLERYKDFRELGRFMLRYSGSTIAAGVVTEIKD
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggcacaggagcgtgcggggatacaactacgacgaggattttgaggaggatgac
ctatacggacaatccgtggaagacgattatggagtttcaccggcaacagctgcccagttc
atgtaccagagggctgatttccagttggcaaatttcgtggatgagccactgaaagaagaa
gatgaagaatgtgaagaacaaccacctgcaaagtccaacacactgggtctcagcgacata
gacaaagcacgcttgcactcttgccttgaggagatgaggaacattgctggggatgcattc
cctgagccagtgatggtgcaggcggttttgaacagcaactttgagatggagaaagccctg
gattccctgtttttgcaaagtgacaaaacacgtccagaagtgaaagaacaaaggcttccc
aggtcttcaagagcagggaaaagaggggaggcatcatctgtctccaaagcagagnttgac
attgtaccaaaagttgcaaagatgacaatatcaggaaaacagaccattggatttgatgcc
tcaattggcagtccaaatggccagatttcaaatacctcgaataaggagtcccattccgaa
tccgttcaaagcacttcgtcttcagcgatgtgcacaaagcaaacgctgctttctgaaggt
cccacgttggtgtcaaatctgaaactgtctcctaagccccctgccaaagtgggtctacac
acagaagacacacccactgggacagggactcctggcaagcaggccggaaagaaccgtaca
aagcttgatgtgaagtctgagcttgagaagagacagggtggcaagcagctcatcaacctc
gtcgtaataggccatgttgatgctggtaagagcacattaatggggcaccttctgtatctg
cttggaaatgtcaacaagcgggcaatgcacaagtatgagcaggagtcgaaaaaagctggc
aaggcctcctttgcctacgcttgggttttggatgaaactggcgaggagcgcgaaagaggt
gtgacaatggatgtaggcctaaccaagtttgaaagtaaaacgaagctggtgacactaatg
gatgcccccgggcacaaggacttcatcccaaacatgatcacgggagctgcccaggcggac
gtcgctctgctggtggttgactcgatcacgggcgagttcgaggccggcttcgaggcggga
gggcaaacgagggagcacgctctgctcgtgcggtcgctgggagtcacccagctagctgtc
gcgatcaacaagatggacatgctgaattggtcaaaggagaggtttgaagaaatcacgagc
aaactgggacagtttctcaaacaagctggttttaaggagtccgaagtgacttacatcccg
accagcggactctcgggggagaatctcgcaatgagaagcaaagaggagaagcttacaagc
tggtacagcggaccctgcctgctcgattgcatagattcttttcgcccccctcagcggcct
gtggataagccctgcaggctctgtgtctctgacgtgtttaaagacgtgggtgcggggttt
tctgttgctgggaaggttgaggcgggctatctgcagactggcgataggctggtcgttatg
ccagctaacgaaatgtgcacagtaaaaggcatcacgctacacgacgagcccatggactgg
gcagctgcaggcgatcacgtcacccttaacgtgacgggcatggacatgatcaaagtcggc
gttggcagcgtggtgtgcgacccaaaagaaccaatcagggcgagcactcgcgtgcgcgcc
cgtatcctcatcttcaacattgacctgcccatcaccagaggcttccctgtgttgttgcac
taccagactgtcagcgagcctgctgttatcaagaagctcataagtgttctccacaagagc
acaggggaggtcgtgaagaccaaaccgagatgccttcaaaagggccagaacgccatggtg
gagctgcagatgcagcggcctgtgtgcctggagcgctacaaggattttcgcgagctcggc
cgcttcatgctgcgctacagcggctccaccatcgccgctggcgtcgtcaccgagatcaaa
gattga
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