Lethenteron reissneri (Far Eastern brook lamprey): 133347626
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Entry
133347626 CDS
T09663
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133347626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133347626
Enzymes [BR:
lrj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133347626
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133347626
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_R3HCC1L
R3H
YfhS
RRM_Thc1
Motif
Other DBs
NCBI-GeneID:
133347626
NCBI-ProteinID:
XP_061416047
LinkDB
All DBs
Position
26:9312780..9341383
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AA seq
640 aa
AA seq
DB search
MEVTRKNFRATLSVVCEAINEADFLALDGEFTGISDGPSIGTLSNGLDTPSDRFNKLRKH
SLDFLLFQFGLCAFRYDSTLEKYIIKAFNFYVFPRPLFRNSPDVKFVCQSSSIDFLAAQG
FDFNKVFQEGIPYLSQEGEKKVREIVEERTRQSGAGITGVTPFTSPASSKGLTVVPDDQK
EYIADVVCKVENLLNDPKQTTLDLPPCNAFQRKLIYQTMNSKFSTGLHFETLQNEKRDRY
IVVTKVSEEERRKKEEDKHSKGLEELQDAVGFTKVIQAISKSGKLLVGHNMLLDVMHTVH
QFYSPLPESLDEFKELTNCVFPRLLDTKLMSSTHPFKEVIQFTTLADLHRRLSETPFKMP
AVESAEGFPAYSTAVEQLHEAGYDAYITGLCFASMANYLGSFMDPPKSHIPARSHLIEPF
VNKLFLMRIIDIPYLNLTGPDLKPNRDHVLHVTFPKEWRTSDLHQLFSAFGNIQVSWIDD
TSAFVALSKTEQVQIAKNTSSEAESYRIQTYSEYLQQGQDGLLESAGGFGPRTPKRRMGL
SGTSEEEAVCKRAKPTFGEDAVNDGLVWGLPVDAEVDGPGASKASLDGTVAGRSSPFAAD
GHTATPDGVLDRRRKRSKGQPKTGAAGAAKRTGIFDVPDW
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacgaggaagaacttcagggcgacgctgagtgttgtgtgcgaggccatcaac
gaggccgactttttggcacttgatggagaattcacaggcatcagtgacggaccatctatt
ggaactttgagcaacggactggacaccccatccgaccgcttcaacaaactgcgcaaacat
tccttggactttttgctgttccagtttggtctctgcgccttccgatacgacagcacttta
gaaaagtacatcatcaaggccttcaacttttatgtgttcccacgaccactgttcaggaat
tcacccgatgtcaagtttgtgtgtcagagctcgagtattgatttccttgcggcacagggc
ttcgatttcaacaaagtcttccaggaaggcatcccatacctgtcgcaggagggagagaag
aaggtgcgcgagattgtggaggagcgcacgaggcagagcggcgcgggcatcacaggagtc
accccctttacatcccccgcctccagcaagggcctcaccgtggtgcccgacgaccagaag
gagtacatcgccgacgtggtgtgtaaagtggagaacctgctgaatgaccccaaacagacg
accctcgacctcccaccctgcaacgcgtttcagcggaagctcatatatcagacaatgaat
tccaagttctcgacgggtctgcactttgagaccctgcaaaatgaaaagagggaccggtac
atcgtcgtgacgaaggtatcggaggaggagagacggaagaaggaggaggataagcactca
aaagggctggaggagctgcaagacgctgtagggttcaccaaagtcatccaggccatctcc
aagtcgggtaaactccttgtaggccataatatgctgctggatgtcatgcacaccgtgcat
cagttctactctccgcttcctgagagtttggacgagtttaaggagctgacaaactgtgtg
tttcccaggctattggacacaaagctcatgagcagcacacatcctttcaaggaggtgata
cagttcaccacgctggctgatcttcatcggcggctgagcgagactcccttcaagatgccg
gcagtcgagagtgcagagggattccctgcgtacagcacggccgtggagcagttgcacgag
gccgggtacgacgcctacatcacggggctgtgctttgcttcaatggccaactacctgggc
tcattcatggatcctccaaagagccacattcctgcacgttcccatctcatcgagccattt
gtcaacaagttgtttctgatgcgcatcatcgacatcccgtacctcaacttgaccgggcct
gacttgaaaccgaaccgggaccacgttctccacgtcaccttccccaaggagtggaggaca
agcgacctccaccagctcttcagcgccttcggtaacatccaggtgtcgtggatcgacgac
acgtccgcattcgtggctctgagcaagactgagcaggtgcagatcgccaagaacacgagc
agtgaggccgagtcgtaccgcatccagacgtactccgaatacctgcaacagggccaggac
ggcctcttggagtcggcgggaggctttgggccccgcacgccaaagcggaggatggggttg
tctggtaccagcgaagaggaggcagtttgcaagcgagccaagcccacgtttggagaggac
gcggtgaatgacggcttggtgtggggcctccccgtggatgccgaggtagatgggccggga
gccagcaaggcctcgctcgacggcacagtggccggcaggtccagcccctttgctgccgac
ggccacacggccacccccgatggagtccttgaccgcaggcggaaaaggagcaaagggcag
cccaagacaggggctgctggtgctgccaagcgcacgggcatcttcgatgtgcccgactgg
tag
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