Lethenteron reissneri (Far Eastern brook lamprey): 133347644
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Entry
133347644 CDS
T09663
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
133347644
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lrj01009
]
133347644
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lrj04515
]
133347644
Protein phosphatases and associated proteins [BR:
lrj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133347644
Cell adhesion molecules [BR:
lrj04515
]
Cadherins
Protocadherins
133347644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Protocadherin
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
133347644
NCBI-ProteinID:
XP_061416080
LinkDB
All DBs
Position
26:complement(9932879..9955886)
Genome browser
AA seq
1342 aa
AA seq
DB search
MGLRDRQVRLRCRLRLRLSDSFCPDNLHRRTRQDKLDSRGPDKISTSPCCAYQDLSSYSN
PAALAAPSWCAMPPAVMGLPMASLFLLLLVSTTPLVQGALLYEVDEEVLVGHLIGDLRQS
KEVADMGPNLEFKVMYSAEAKHLIKVNELSGELSVALNLDREALCMEEPDACRSTGFMHT
VQVAAMAKGEGSSNLRLLDVQLLVRDINDHAPAFRAPHLNVSISESEAVGRRVPLPRAID
PDAGDNGIQHYRISAANGDGLQLGPFSLFESDDDDDGGGVGVDGDGGMGRRALLELREQL
DREAVPSYELLLWGEDGGNPKLSGSVLLTIVVVDANDNAPVFVDPPTRPVRITEHSKVGT
SVVQLRAADPDADLNGAITYSFHTKLTSLATQAALLVDGTTGLVTVGNAEKLDRETMPVH
RLVVVARDGGHFSRSASVTVTVELNDDNDNAPVFEVIALQGEYLPDGGVKIVENLPSGTP
VVLISVSDPDLGSSGTVDVRLEFPSGPSAAFELTSVGGSGGGGGAGSTSSVGAELGSPNK
VQFLLKTTRLLDYEEAQQYNVSVLAADRGNPKLSKLLNLVISVVDVNDNTPVFMNPASIE
GDVAVYEVSLRENGPAGTVVLNLLATDADSGANGAITFTLSELAGGGPGAEPFSLNKRTG
QLTLATPLDRETRMRYELSVEASDGGSPQRKARAMVRVTVLDENDNAPTFVGVSNSTNCM
YQFFVEEETSVGTYVGTVSTSDLDEGDNARVALNLVREAGPDWIGGASDAGGNNRYFSMT
PGGVVRTLVVLDREVRVQYELSVRAVDSGRPALSASCRVSITVSDTNDNAPVITSPNTND
TWKHVRTFSPAGMLVGVSVTANDIDAGDNGRLLYEIAGGNPKGIFLLNADSGALSLARTV
SGSDEGLHRLVVRVRDRGGSGSRRVRAVSGLLEAATPVLLHVFVNETVENVTLIEQLVAE
SLMRPLSEDVVNLGRRTGPDLPTWAIVALVAAVGVILLAVTIGLIAFFCRRRRRQSGGRG
GKKGAPSGGAGIIMSSSSSSSSGQHLQSQQAGDFLIAGSKKGRRKQRTNKGAVAGIQMQS
RGSVGERLAGSPESQPFMKRFRFSSSSSHGGGTSVYRPAFLAGPDGDPSPPPASTFKPDT
PSFSTFVEAPVGRVTGSGGRGGGGGSSRGGYANDAPRSNHRQHGGPDRYDDGYEHHMSGR
PPLPTTHHLNRTHDRSTPEGSVGGRDDPETGGRLPDIARYPPPQFQDYADPVDADVIYDP
RGFDPHDYSQDYDDQHDYSNQHDYSDPPDFNNQHNYDNQDHQHYGEQLYSNPDRDYEQEA
YSYPDYDRPHERTARHVPTTEL
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgggcctccgtgaccgccaagttcgtcttcgttgccgtctcagactccgactgtctgac
agtttctgccccgataacctacaccggaggactcgacaggataaactggattccagaggg
ccagataaaatctccacatctccgtgctgtgcctaccaagacctgtcaagctactcaaat
ccggcggctctggcagcgccgtcgtggtgtgccatgcctcctgcggtgatggggttgcca
atggcatcacttttcctgctgctactggtctccacgacaccgctggtgcagggggccctg
ctgtatgaggtggacgaggaggttctggtgggacacctcatcggggatctcaggcaaagc
aaggaagtagctgatatgggacctaacctggagtttaaggtcatgtattcggcagaggcc
aagcatctcattaaagtgaacgaattgtcgggcgagctttccgtggccttaaaccttgac
cgtgaggctctgtgcatggaggagcccgacgcgtgcaggagcaccggcttcatgcacacc
gtgcaggttgccgccatggccaagggcgaaggctccagtaacctccgtctcctcgacgtg
cagcttttggtgcgcgacatcaacgaccacgcaccagccttccgtgcgccgcatctcaat
gtctccatctctgagagcgaggccgtggggcgccgcgtgccgctgccccgtgccattgac
cccgacgctggcgacaacggcatacagcattaccgaatctcggcggccaacggagatggg
ctccagctcgggcccttcagcctcttcgaaagcgatgatgacgatgatggcggcggggtt
ggtgttgatggggatggtggcatgggccgtcgggccctgctggagctgcgcgagcagttg
gaccgcgaagcggtgccctcgtacgagttgctgctgtggggcgaggacggcggcaacccg
aagctctcgggctctgtgctgcttaccattgttgtcgtcgatgccaatgacaatgcgcca
gtgttcgttgacccgccgacgcggcccgtccgcatcaccgagcactcgaaggtcggcaca
agtgttgtgcagctacgtgcggccgaccctgacgctgacctcaatggtgccatcacctac
tccttccacacgaagctcacatcgctggcgacgcaggcggcattgcttgtggacggcacg
acgggcctcgtcacggtggggaatgcggaaaagctggatcgtgagacgatgcccgtgcac
cggctagttgtggtggctcgtgatggtgggcacttttctcgttccgcctcggtcaccgtg
acagtggagctgaatgatgacaacgacaacgcgccggtatttgaggtgatcgcgctgcaa
ggcgagtacctcccggatggcggtgtaaagatcgtcgagaacctgccatcgggcacgcct
gtggtgctcatttctgtgtctgacccagacctggggtccagcggcactgtcgatgtgcgc
ctcgagtttccctctggtcccagcgccgccttcgagctcaccagtgtgggcgggtctggc
gggggcggtggagccggatcgacttcgtcggtgggagcagagctcggcagccccaacaag
gtgcagttcctgctgaagacgacgcgtcttctggattacgaggaggcgcaacagtacaat
gtgagcgtgttggcagcggacaggggtaaccccaagctctccaaactattgaacctcgtc
atctccgtggtggacgtcaatgacaatacgccggtcttcatgaaccccgcatcgatcgag
ggcgatgtggccgtgtacgaggtgtcgctgcgtgagaatggcccagctggcactgtcgta
ctgaacctcttggctacagacgctgacagcggcgcgaacggggccatcacattcacacta
agcgagttggcgggtgggggtcctggggcagagccgttctcgctgaacaagcgcacggga
cagctgacgttggcgacgccgctggaccgcgagacgcgcatgcgctacgagctgtcagtg
gaggcgtctgacgggggctcgccccagcgcaaggcccgtgccatggtgcgcgtcaccgtg
ctcgacgaaaatgacaatgcccccacgttcgtgggcgtctccaattccaccaactgcatg
taccagttcttcgtggaggaagagacgtctgtaggcacgtatgtaggcaccgtctcaacg
agcgacctggacgagggcgacaacgcccgcgttgccctcaacctcgtacgggaggctggg
cctgactggattggtggcgcaagcgatgcgggtgggaataaccggtacttctcgatgaca
ccgggtggggtggtgcgcacactcgtggtgctggaccgcgaggttcgcgttcagtatgaa
cttagtgtgagggctgtcgactcgggccgccccgccctgtcggcgtcatgtcgtgtaagc
atcacagtcagcgacaccaatgacaatgcaccggtgatcacgtcacccaataccaacgac
acttggaaacacgtgcgcaccttctcgccggccggcatgctggtaggggttagcgtgacg
gcgaacgacatcgatgctggcgacaatgggcgactgctgtacgagatcgccggaggaaac
cccaaaggtatcttcctgctgaacgccgactcgggtgccctgtcgctggcacgcacggtc
agcggctcggacgaggggctgcaccggctagtggtacgtgtgcgtgatcgtggaggtagt
gggtcacgacgagtccgggcggtctccgggttgctggaggcagcgacgccggtgctgctc
catgtgtttgtgaatgaaacggtggagaacgtgacgctcattgagcaactcgtggctgag
agcctgatgcgaccgctgagtgaggatgtggtgaatttgggccggcgcacggggcccgat
ctgcccacgtgggccatcgttgcactggtggcggccgtgggcgttatcctcctcgctgtc
accatcggacttattgccttcttttgccggcgccgccgaaggcagagtggggggaggggc
ggaaagaagggcgcgcccagtggcggtgcaggcattataatgtcgtcgtcgtcatcatcg
tcatccgggcagcacttgcagtcacagcaggcgggcgatttcctcatcgcgggcagcaaa
aaggggcgcaggaagcagaggacgaacaagggcgccgttgctgggatccagatgcagtca
cgcggctctgtgggtgagcgtctggccgggagccccgagtctcagccgttcatgaagagg
ttccgattcagctcttcctcatcgcacggtgggggcaccagcgtctaccgcccagccttt
ctcgccgggccagacggggatccaagccccccgccagcgtcaacattcaagccggatact
ccatcgttcagcaccttcgtggaggcgccagtcggccgggtcacgggatctgggggccgt
ggtggtggtggtggttctagcagaggcggttatgccaacgacgcccctcggagcaaccac
agacagcacgggggaccagaccgatatgatgacggctacgagcatcacatgagcggccgc
ccccctttacccacaacacatcacctgaaccgtacccacgaccgcagcacccccgagggc
agcgttggtgggcgcgacgaccccgagactggcggccgcctgcctgacattgcacgctac
cctcctcctcaattccaagactacgcagatccggtggatgccgatgtcatctacgaccca
cgcggcttcgacccccatgactacagccaggactatgatgaccagcacgactacagcaac
cagcacgactacagcgacccacccgacttcaacaaccagcacaactacgacaaccaggat
caccaacactatggcgagcagctgtacagtaacccagaccgtgactacgagcaggaagcg
tacagctatccggattacgaccggccacacgaacgcacggcgaggcatgtgcccaccacc
gagttgtga
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