Lethenteron reissneri (Far Eastern brook lamprey): 133347854
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Entry
133347854 CDS
T09663
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133347854
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lrj04515
]
133347854
Cell adhesion molecules [BR:
lrj04515
]
Immunoglobulin superfamily
ROBO family
133347854
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
fn3
Ig_VEGFR-1-like_5th
C2-set_2
Ig_6
Unc5_NetrinR_N
Ig_PDGFR_d4
Epiregulin_C
CR_prot_dom_plant
PSI_induc_2
SRTM1
Prominin
TMEM154
Motif
Other DBs
NCBI-GeneID:
133347854
NCBI-ProteinID:
XP_061416516
LinkDB
All DBs
Position
26:20698459..20866174
Genome browser
AA seq
1543 aa
AA seq
DB search
MSGALCSLLLGVCFVGQALARLCLCQCDCEVDEPSPRLFTPGQSRHFAATRGSLPLHAKP
RHLLSWSRPRQEDALPRITEHPSDLIVLRGEPATLNCKAEGRPAPTVEWYKDGERVEIGK
DDHRTLLHTGSLFFLRVQHTRRTKTDEGSYVCVARNYLGEAVSRNASLHIAMLRDDFRQQ
PADVVAAAGEAAMLECVPPRGHPEPTVSWKKDGVILRGGNDAVRINGGRLSISEVRRSDG
GEYVCVATNSVGVRESKPAQLFVKERPTFVRKPLNQLVAANGSVEFNCEAQGDPRPDVSW
TKLRGELPRDRHEVKADNTLRIWLARPSDAGTYTCVASSQLGRAEVSASLNVHVGPYASP
QLVVQPRDQVVEEGQTATFHCLAAGNPPPSVFWQREGTQNLLFPNQPLQSSNRLWVSPSG
DLAVSDVRPSDVGYYICHSLSVAGSVVAKAYLDVTDVTLENLPPIARQVAVNQTVPVARS
VVLPCQAVGGSGGGATTPTVVYWLKGGTRIPSQDGRMSWQEGRGLQISYTRVEDTGIYTC
VISNANGETSWNTFLEVKEGKRYTEMNAALAPRGPSRPEIVEVSRNTVTLSWKRDTLQPA
TSYIIEAFSRSLGKGWKIVAEGVRSETFTVRSLRQGAIFVFLVRAVNLHGASEPSAVSEP
VRTEDPSPAEPGLDSALIQKELGRISIHLQDPVTLSSTALRLHWTVMQRPLYLQGFRVLY
RPLSSSRSASGNWSVLEVRSPLEHGAVLSRLRKGFSYEAKVRAFFNGFQGPDSEARRGST
FEEAPNASPQHVEVKRCEEPGCDSITVTWQPPQEELQNGVILEYKLWCMGNSSELHINRT
VEASSRSAVLRPVVSGVMYRITVAAVNSAGTGLRSPLTVLAPVASSSSSSQFDTFVKTPV
FIAVVVFLVLLVAIVIAIVVYCCCCRKRSSPDPYQGATKDPSFTFTPTVTFNPKDDTSMM
SNASYPPFGGPGQTWTEPWQNAALNQNSPSQAIPDYCRPADHLSPFRNQLEQKETNLHRP
RTPETPVYREVEPAHQLSGTQNFPGPRIKECQVLGKTSAYAASPPAQAALCNNMSSTARV
TDKRTHKQPFLPRADGLPGTKNHMIEVTKLNNELAMTDGRGEAVAHHSTPEQSTMGSHAS
SERSSSSAHSGKRKNARTPKTGRQAVPGVAEPLPPPPALPPAELGSAGRAAQAEHERVDE
GSGYPPERVYEYLQQNEEEHDEDDEEADEEDDLVVDEGKARGPQQYAHASYSLQSTAPCS
PASPEERRPMIQAHSHEPPGRRKRAALERAARHYPGRPLLSARSPSPPCLYGYITGPMPS
DLETEPAEEEEEEEEEAAVAVVSAGTVSVYPKAGTVGAARFDAKKLLLSLEHTSVSSLGD
PESSLAGSMLNGWGSASEGDGDDEDGGGSSDGGGVGGAGGAGGAGTGGASSDGGSSESSF
RVDADFADAIAAAAESAGLKLHHQHAAAQAAQAAAMGVVQPGAGVQQQQQQQVASYTEDF
ALYSRPHFPATGSRALPGAGAASLGPERRSGDPTGTVSAGIKC
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtgcgctctgctccctgctgctaggagtttgtttcgtgggccaggcgctggca
cggctctgcctgtgccagtgcgactgcgaggtggacgaaccctccccgcgcctcttcacg
ccgggacagtcgcgccactttgctgccactcgcggctcactgccactccacgcaaaaccg
cggcaccttctcagctggtcacgaccccggcaggaggacgctctcccgcgcatcacggag
cacccgtcggatctgatcgtgctgcgcggcgagccggccactctcaactgcaaggcggag
gggcgcccggcacccaccgtcgagtggtacaaggatggcgagcgcgtggaaatcggcaag
gatgaccaccgcacgctgctgcacaccggctcgctcttcttcctgcgagtgcagcacacg
cggcgcaccaagacggacgagggcagctacgtgtgcgtcgcgcgcaactacctgggcgag
gccgtgagccgcaacgcgtcgctccacattgcaatgctacgcgacgacttccggcagcag
ccggccgacgtggtggcggcggcgggggaggcggccatgctggagtgcgtgccgccacgc
ggccaccccgagccgaccgtctcgtggaagaaggacggcgtgattctacgcggtggaaac
gacgccgtcaggataaatggcgggcgtctgagcatctccgaggtgcggaggagcgatgga
ggggagtacgtgtgcgtggccacaaactcggttggcgtgcgggagagtaaaccagcgcag
ctcttcgtcaaggagaggccgacatttgtgaggaagcccctgaaccagttggtggcggcg
aacggcagcgtggagttcaactgcgaggcccagggcgacccgcggccggacgtgagctgg
accaagctccgcggggagctgccacgtgacaggcatgaggtgaaggctgacaacacgcta
cgcatctggctggcgcggccatccgatgccgggacgtacacgtgcgtggcctcgagccag
ctcggcagggccgaggtgtctgcctctctcaacgttcacgtgggcccctacgcatccccc
cagttggtggtgcagccacgcgaccaggtggtggaggagggacagacggccacattccac
tgcctggctgctgggaacccacctccctctgtgttctggcagcgagaaggcacgcagaat
ctgctcttcccgaatcagccgctgcagtcctccaaccgcctgtgggtgagccccagcggc
gacctcgccgtgtcggacgtgcggccgtcggacgtcggctactacatctgccactcgctc
agcgtggccgggagcgtcgtggccaaggcctacctcgacgtcaccgatgtcacgctggag
aaccttccacccatcgcccgtcaggtggcagtcaaccagacggtgccagtggcgcgctcc
gtggtgctgccctgtcaggcggtgggtggcagcggcggcggcgccaccactcccaccgtc
gtttactggctcaagggtggcaccaggatcccgtcgcaggacggtcgcatgtcctggcag
gaaggccgagggctgcagataagctacacgcgggtggaggacactgggatttacacctgc
gtcatttcaaatgcaaatggagagacttcctggaacaccttcttggaggtcaaagagggc
aagcggtacacggagatgaacgcggcgctggccccgcgcggcccctcgcgtcccgagatt
gtggaggtgagccgcaacaccgtgacgttgtcgtggaaacgggatacgctgcagccagcc
acgtcctacatcatcgaggctttcagccgctcgctggggaagggctggaagatcgtggcg
gaaggcgtccgctcggagactttcaccgtgcgcagcttgcgccagggcgccatctttgtg
ttcctggttcgagctgtaaatctgcatggcgccagcgagccgagcgccgtctcggagccc
gtgcgcacagaagacccatcaccggcggagcccggcctggactcggcgctgatccagaag
gagctgggacgcatttccattcacctgcaggaccccgtcaccctcagctccactgcccta
cgcctgcactggacggtgatgcagcggccgctctacctgcaaggcttccgcgtgctctac
cgcccgctgtcgtcgagccgctcggcgtcgggaaactggtcggtgctggaggtgcgctca
ccgctggagcacggtgccgtgctcagccgcctgcgcaagggcttctcgtacgaggccaaa
gtcagggcctttttcaacggcttccagggccccgacagcgaggcgcgacgcggctccacg
ttcgaggaagctccgaacgcgtcgccgcaacacgtagaggtgaagcggtgcgaggagccg
ggttgcgacagcatcaccgtcacctggcagccaccgcaggaggagctgcaaaacggagtg
attctagagtacaagctgtggtgcatgggtaacagcagcgagctgcacataaaccgcacg
gtggaggcgtcgtcccgctcggcagtgctgcgcccggtcgtctcgggggtcatgtaccgc
atcaccgtcgccgccgtcaactcggccggcacggggctgcgctcgccgctcaccgtcctc
gccccggtggcgagcagcagcagcagcagccagttcgacaccttcgtcaagacaccggtc
ttcatcgccgtggtggtgtttctcgtcctgcttgtcgcgatcgtcatcgccatcgtcgtc
tactgctgctgttgccgcaagcgcagcagccccgatccgtaccagggcgccaccaaagat
ccttccttcacattcactccaacagtcacctttaaccccaaggacgacaccagcatgatg
agcaatgcgagttacccgcctttcggaggtcccgggcagacgtggacggaaccgtggcag
aacgccgcactaaatcagaactcgcctagccaggcaatcccggactactgcaggccagcc
gaccatctgagtccgttccggaaccagctggagcagaaggagacgaacctgcaccgacct
cgcaccccggagacacccgtgtatcgcgaggtggagccagcccaccagctgagcggcacc
cagaacttcccggggcccagaatcaaagagtgccaggtcctgggcaagacgtcggcgtat
gcggcctccccgccggcgcaggcggcgctgtgcaacaacatgagcagcacggcgcgcgtc
acggacaagcgcacgcacaagcagcccttcttgccacgcgcggacggcttgcctggcacc
aagaaccacatgatcgaagtcaccaagctcaacaacgaactcgcgatgacggacggccgg
ggggaggcggtcgcccaccacagcacccctgagcagagcaccatgggctcccacgccagc
tccgagcgcagcagctcatcagcgcactcggggaagaggaagaacgcgcggacacccaag
acggggaggcaggcggtgccgggagttgccgagcctctcccgcccccgcccgctctcccg
ccggctgagctgggcagcgcggggcgagcggctcaggcagagcacgagcgagtggacgaa
ggtagcgggtacccgcccgagcgggtgtacgaatacctgcagcagaacgaggaggagcac
gatgaggatgacgaggaggcggacgaagaggacgacttggtggttgatgaggggaaggcg
cgtgggccccagcagtacgcgcacgcgtcgtacagcctgcagtcgacggccccgtgctcg
cctgccagccccgaggagcgcaggcccatgatccaggcgcacagccacgagccgcccggc
agaagaaagagggcggcgctagagagggccgcgcggcactacccaggacgcccactgctc
tccgcaaggtccccttcaccgccatgcctgtatggatacatcacgggcccgatgccctcc
gatctggaaacggaaccggcggaagaggaggaagaggaggaggaggaggcggccgtggca
gtggtgtcggcagggaccgtaagcgtgtaccccaaggcgggcaccgttggggccgcccga
tttgatgccaaaaagctgctgctgagcctggaacacacgtcggtgtccagcctgggcgac
cccgagagctccctggcggggtccatgctcaacggctggggctccgcgtctgagggcgac
ggcgacgatgaagacggcggcggctcgagtgatggcggcggggtcggcggggccggcggg
gcgggcggcgcgggcaccggcggggcctccagcgacggaggctcgagcgagagctcgttc
cgcgtggacgctgacttcgccgacgcgattgcggccgccgcggagagcgcgggactcaag
ctgcaccaccagcatgccgcggcgcaggccgcgcaggcggccgcgatgggcgttgtgcag
cccggagctggcgtgcagcagcagcagcagcagcaggttgcgtcctatacggaagatttt
gcgctgtacagccgcccgcacttcccggcgacagggagccgagcgctgcccggagccgga
gccgcgagcttgggccccgagcggaggtcaggtgaccccacggggaccgtcagcgccggc
atcaagtgttag
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integrated database retrieval system
