Lethenteron reissneri (Far Eastern brook lamprey): 133347987
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Entry
133347987 CDS
T09663
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133347987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133347987
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133347987
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133347987
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cluap1
7tm_6
Motif
Other DBs
NCBI-GeneID:
133347987
NCBI-ProteinID:
XP_061416744
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All DBs
Position
26:13760093..13790662
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AA seq
860 aa
AA seq
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MADKRKLQGEIERCLKKVCEGVEMFEDIWQKIQTSCRTPAHTSEVHNAANANQKEKYEAD
LKKEIKKLQRLRDQIKTWVASNDIKDKRQLLENRKLIETQMERFKVIERETKTKAYSKEG
LGLAAKVDPAQREKEDICQWLANTIDTLNMQVDQFESEVESISAQTRKKKAEKEKQDRLE
ELKRHIERHRHHIRMLETLLRMLDNSTIDVDSIKKIKDDVEYYVDSSQDPDFEENEFLYD
DIDMEDITQAALMATSPGSNSITEEDSLQFNSSPASSPSSSPLPASPGALLAMENHDEEK
RSKDCETTQSLPKLLCVKANHTNHAPPSPVASHPVACRGTAKNATAPGTAGRGSAPARTV
NSANSAVVVAAAAAMNHVAPAPATSNQGYVVVVAVGASAPCGTAGGTSQPRPPGSAVAMP
NTPAKPPNGITSYSAVVAEGGNLEPSQSVNNNNSSSSSNNIGSSSSSISSSSGGGSSGTN
NGGSGSSSSSNGSEHTQLPSAAQPPLSTAPSPSTGTSEYSSSSGLPRPPSGNATLPATNT
SSGASSSSGSGASSSASSSASAPSPPATPATPGTIIATAAVTVTATLTVTVTQTTTTASF
HDVGASVAASLPALSNGPLAHSPCDAKSPSPERLSSPKSLSAHIVVSAGLEEQVHSLHLN
HSELLLEEELETAPPVVVVDGEGSDAPSPGVEVATVEARLQPVMGVCPLAPVPLVKELLY
QQAMLEAVWHHMPHPSDSERLRHYLPRSPCPIPVYHQPALPGSYDSLDFYQRLSTETLFF
IFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKWG
QRKKEGFTFEYRYLEDRDLQ
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagcggaaattgcaaggagagatagagcgctgtctaaaaaaggtgtgcgag
ggcgtggagatgtttgaagacatctggcagaagattcagacatcttgtcggactcctgct
cacacgtccgaggtgcacaatgcggccaacgcgaaccagaaggagaagtacgaggccgac
ctcaaaaaggagatcaagaaactgcagaggttacgggaccaaatcaagacatgggtggcc
tccaatgacatcaaagacaagcggcagctgttggagaaccggaaactcatagagacgcaa
atggagaggtttaaggtgattgagcgggagacgaagaccaaggcgtactccaaggaaggc
ctaggccttgctgccaaggtggacccagctcagcgggagaaggaggacatttgtcagtgg
ctggctaacaccattgacacactcaacatgcaggtggaccaatttgaaagcgaggtggag
tcgatatcggcacagacgaggaagaagaaagcggagaaagagaagcaggacaggctagag
gagctgaagaggcacattgagaggcacaggcaccacatacgaatgctagagacgctcttg
cggatgctggacaacagcacgatagacgttgactccatcaagaagattaaggacgacgtg
gagtactacgtcgattcctcgcaagacccagacttcgaagagaacgaattcctttacgat
gacatcgacatggaggacatcacgcaagcggcgttgatggcgacatcccctggcagtaac
agcatcacggaggaggactcactgcagtttaacagctcgccagcgtcaagccccagcagc
tcaccgctccctgccagccccggcgccctcttagccatggaaaaccacgatgaggagaag
aggagtaaggactgcgagacgacgcagtcactaccgaaactgttgtgcgtgaaggcgaac
cacacaaaccacgcgccgccgtcgcccgttgccagccaccccgtggcgtgccggggcacg
gccaagaatgcgacggcgcccggcacagcgggcagaggctcggctcctgcccggaccgtc
aactctgccaactccgccgttgtcgttgccgccgccgccgcaatgaaccacgtggcaccg
gcgccggccacatcgaaccagggctacgtggtggtggtggcggtgggagcgagcgccccg
tgcggcacagccggtggcacctcccagccccggcctcccggctccgccgtggccatgccg
aacactcccgccaaaccgcccaatggcatcacgagctacagcgccgtggttgcggaggga
ggtaacctggagccatcgcagtctgtgaacaacaacaacagcagcagcagcagcaacaac
atcggcagcagcagcagtagcatcagcagcagcagcggcggcggcagcagcggcacaaac
aatggcggcagcggcagcagcagcagcagtaacggcagcgaacacacgcagctgcccagc
gcggcgcaacctccgctgtctaccgccccctcacccagcaccggcaccagcgagtactcg
tcgagttcagggctgccgaggccacccagcggtaacgccacccttcccgccacaaatacc
agcagcggcgccagcagcagcagcggcagcggcgccagcagcagcgccagcagtagcgcc
agtgccccgtcaccgccggccaccccggcgactccgggcaccatcatcgccacggccgcc
gtgacggtgacggcgacgctcaccgtcaccgtgacgcagacgacgacgacggcgtcgttc
cacgacgttggagcgagcgtcgcagcgtcgctgcctgcgctcagcaacggcccgctcgct
cactcgccttgtgacgccaagagcccaagccccgagcgtctgagctcgccgaagagcttg
tcggcgcacattgtggtgagcgccggcctggaggagcaggtgcactcgctgcacctcaac
cacagcgagctgctgctggaggaggagttggagacggcgccgccggtggtggtggtggac
ggcgagggctcggacgcgccgtcccccggcgtggaggtggcgacggtggaggcgaggctg
cagcccgtgatgggcgtctgcccgctggcgcccgtgccccttgtcaaggagctgctgtac
cagcaggccatgctggaggcggtgtggcatcacatgccgcacccctccgactcggagagg
ctcaggcattacctgcccaggagtccgtgccccatacccgtgtatcaccagcccgctctg
cctggcagctacgattccctcgacttctaccagcgcctttccaccgaaaccctctttttc
atcttctactacctggagggcaccaaggcgcagtacttggcagccaaggccctgaagaag
cagtcgtggaggttccacaccaagtacatgatgtggttccagcggcatgaggagcccaag
accatcacggacgagtacgagcagggtacgtacatttactttgattacgagaagtggggc
caacgcaagaaggaagggttcaccttcgagtatcgctacttggaggaccgcgacctgcag
tga
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