Lethenteron reissneri (Far Eastern brook lamprey): 133348877
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Entry
133348877 CDS
T09663
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03082
ATP-dependent chromatin remodeling
lrj03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133348877 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
133348877 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lrj01009
]
133348877 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrj03021
]
133348877 (SMARCB1)
03036 Chromosome and associated proteins [BR:
lrj03036
]
133348877 (SMARCB1)
Protein phosphatases and associated proteins [BR:
lrj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133348877 (SMARCB1)
Transcription machinery [BR:
lrj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133348877 (SMARCB1)
SWI/SNF complex
133348877 (SMARCB1)
Chromosome and associated proteins [BR:
lrj03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133348877 (SMARCB1)
PBAF complex
133348877 (SMARCB1)
SWI/SNF complex
133348877 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
133348877
NCBI-ProteinID:
XP_061417937
LinkDB
All DBs
Position
28:6318453..6325123
Genome browser
AA seq
403 aa
AA seq
DB search
MALSRTYGPKPIKFQLEDAGEWFMIGSEVGNYLRMFRGSLYKKYPSLWRRLATMDERKKI
VASSHGEATGRWEWGQCRGKARTSDERYHGYTTLATSVTLLKACEVEEILEGNDDKYKAV
SISTEPPAYLREQKPKRPNQWVPAMPNSSHHLDAVPCSTPINRNRMGRDKKRTFPLCFDD
HDPAVIHENAMQSEILVPIRLDMEIDGQKLRDTFTWNMHEKLITPEMFAEILCDDLDLNP
LSFVPSIAAAIRSQVEAYPTDSILDDQSDQRVIVKLNIHVGNISLVDQFEWDMAEKENSP
EKFALRLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFRSVPRPCKSENPLPIVEIAIRN
AGDADAWCPFLETLTDAEMEKKIRDQDRNTRRMRRLANTAPTW
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagtcggacgtacgggcccaaacccattaagttccaactcgaggatgccgga
gaatggttcatgatcggctccgaggtggggaattacctgcgcatgttcaggggctccctg
tacaaaaagtacccttcgctatggcgccgcttggccacaatggacgagcgcaagaagatt
gtcgcctcgtcgcacggtgaggcgacgggccgttgggaatggggacagtgcaggggcaag
gcgaggacgtcagacgagagataccatggctacacaaccctggccaccagtgtgacattg
ctcaaggcctgcgaggtggaggagatcctggaaggcaatgatgacaaatacaaagcagtc
tccattagcaccgagccacctgcctaccttcgagaacagaagccaaagcggccgaaccag
tgggtgccagcaatgcccaacagctctcaccatctcgacgcagtgccttgctccacgccc
attaaccgcaaccgcatgggccgcgacaaaaaacgcactttcccgctctgtttcgatgac
cacgacccggcagtgattcatgagaacgcgatgcagtccgaaattctggtgcccattcgt
ctggacatggagatcgatggacagaagctcagagacacttttacgtggaatatgcatgag
aagctgatcacgccagagatgtttgccgagatcctgtgcgacgacctggatctgaacccg
ctgagtttcgtgccgtccatcgcagctgcgattcgcagccaagtggaggcctaccctact
gacagcatcctggacgaccagagtgaccagcgggtcattgtcaagctcaatatccacgtg
gggaacatctcgctggtggatcagtttgaatgggacatggcggagaaggagaactcgccg
gaaaagtttgcgctccggctttgctcggagctgggactgggtggggagtttgtcactact
attgcctacagcatccgtggccaactcagctggcaccagcgcacgtatgccttcaggtcg
gtgccacgcccttgcaaaagtgagaacccgctgccgatagtggagattgccatccggaat
gctggcgatgccgatgcctggtgccccttcctggagaccctcactgatgctgagatggag
aaaaagattagggaccaggacaggaacacccggcgtatgcgacgactggccaacactgct
ccgacttggtag
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