Lethenteron reissneri (Far Eastern brook lamprey): 133348931
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Entry
133348931 CDS
T09663
Symbol
DDX54
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lrj03009
]
133348931 (DDX54)
Enzymes [BR:
lrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133348931 (DDX54)
Ribosome biogenesis [BR:
lrj03009
]
Eukaryotic type
Pre-60S particles
Helicases
133348931 (DDX54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
Motif
Other DBs
NCBI-GeneID:
133348931
NCBI-ProteinID:
XP_061418053
LinkDB
All DBs
Position
28:9605665..9625690
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AA seq
806 aa
AA seq
DB search
MNRERRQRGGRRGGRGGGPRRTQRRDADSEDEAAESNSYDAELVPAESVPSKESVKHLSF
PSEDASDTELNTRELVKQQNCKKKKSGGFQSMGLSYPVFKGVMGKGYKVPTPIQRKCVPV
ILEGRDVVAMARTGSGKTAAFLVPMFERLHARSAQAGARALVLSPTRELALQTSKFTKEL
GKHTGLKTALILGGDRMEDQFAALHENPDIIIGTPGRLMHVVVEMNLKLQAMEYVVFDEA
DRLFEMGFAEQLTEIIRRLPDSRQTLLFSATLPKQLVEFARAGLSDPVLIRLDVDSKLSD
QLKLAFMCSRADDKPCVLLHLLRTVVKPHEQTVVFVATKHHVEYLRELVSQAGMSCAYIY
SALDQTERKINVGKFVHKKTMLLIVTDVAARGIDIPMLDNVINYNFPGKPKLFVHRVGRV
ARAGRPGTAYSLVAPDEIPFVIDLHLFLGRPLRFPASAAAAAAAAAKEAGGAAAADTDGL
LGRVPQCVLDDEDTLLRAQHESSLELSSLQHVAENAFQHYARTRPAPSSESIKRARALKM
ASMPVHPLYSEVLEQNEHERLKIVDEIKNYKSKATIFEINATKKTVASEIMRAKRAKHGR
AIGNHRQALQERRRRRPRTEAGPEPPRRVAAANEEETEETLDEVFSEVVGRKRKRPQSDG
DPDKGKRKKVDTAXRTEEFYIPYQSKDANSERGLSMNGNTVFEQQASGAVLDLMGDDTRD
LDKNKQLMRWDRKRKRFVRDSGNKDGKKKIKTESGQYISASYKTNFYAEWRKKNRIDDRV
SESEDEEGWRRRWEERTRRRVARRKG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgagagcggcgtcagcgtggagggcggcgtggcggacggggcggcggtccccgg
cggacgcagaggcgcgacgcggacagcgaagacgaggccgcggagtcgaactcctacgac
gcggagctggtaccggccgagagcgtacccagcaaggagagcgtgaagcatttgagtttc
cccagcgaagatgcctccgatacggagctcaacacacgcgagcttgtcaagcagcagaac
tgcaagaaaaagaagtctggaggatttcagtccatgggactcagctacccagtgttcaaa
ggggtcatgggaaaaggctacaaagtccctacaccgatccaaagaaaatgtgttcccgtg
atcttggagggccgcgatgtggtggccatggcgcgcacgggcagcggaaagacggccgcg
ttcctcgtgcccatgttcgagcggctgcacgcgcgcagcgcccaggccggcgctcgtgcc
ctcgtgctctcgcccacgcgcgagctcgccctgcagaccagcaagttcaccaaggagctc
gggaagcacaccgggctgaagaccgccctcatcctcggaggagacaggatggaagaccag
tttgctgccctgcatgagaacccagacatcatcatcgggacgcccggccgcctcatgcac
gtggtggtggagatgaacctgaagctgcaggcgatggagtacgtcgtgttcgacgaggcc
gacaggctctttgagatgggcttcgccgagcagctgacggagatcatccgccggctcccc
gactcgcgccagaccctgctcttctccgccacgctgcccaagcagctcgtggagtttgct
cgtgcaggcttgagtgacccagtgctgattcgtctggacgtggactccaagctgagtgac
cagctcaagctggcgttcatgtgctcacgcgcggacgacaagccgtgcgtgctgctgcac
ctcctgcgcacggtggtcaagccgcacgagcagacggtcgtgttcgtcgccaccaagcac
cacgtggagtacctgcgagagctggtgagccaggcgggcatgagctgcgcgtacatctac
agcgccctcgaccagacggagcgcaagatcaacgtaggcaagttcgtgcacaagaagacc
atgctgctgatcgtgacggacgtggccgcccgcggtatcgacatccccatgctggacaac
gtcatcaactacaacttcccggggaagcccaaactcttcgtccatcgcgtcggccgcgtg
gcgcgcgccggccgccctggcacggcgtactccctggtggcacccgacgagattcccttc
gtcatcgacctccacctcttcctcgggcgacccctgcgcttccccgcctccgcggccgcc
gctgccgccgccgccgccaaggaagcgggaggagcggcggcggccgacacggacgggctg
ctcggccgcgtgccgcagtgcgtgctggacgacgaggacacgctgctgcgcgcacagcac
gagtcctcgctggagctgagctcgctgcagcacgtcgccgagaacgcgttccagcactac
gcccgcacgcgcccggcgccctcctccgagtccatcaaacgagcccgggccctcaagatg
gcgtccatgcccgtccacccgctctactccgaggtcctggagcagaatgagcacgagagg
ctgaaaatcgtcgatgaaatcaagaactacaagtccaaggctaccatattcgagatcaac
gccacgaagaagacggtggcgagcgaaatcatgagggccaagcgggccaagcacggccga
gccatcggcaaccaccgccaggccctgcaggagaggcggcggcgacggccgcgcactgag
gccggcccggaaccgccgcgccgcgtcgctgccgccaacgaggaggagacggaggagacg
cttgacgaggtattctccgaggtcgtgggacggaagcggaaacgtccccaatcggacggc
gatcccgacaaagggaagcgcaaaaaagtggacactgccnnaaggactgaagaattctac
atcccgtaccagtccaaagacgccaactctgagagggggttgagcatgaatgggaacacg
gtgtttgaacagcaggcgtccggggctgtgctggatctcatgggcgacgacacgcgggac
ctggacaagaacaagcagctcatgcgatgggacagaaagaggaagcgcttcgtgcgcgac
tccggcaacaaggatggcaaaaagaaaattaaaacggagagcgggcagtacatctccgcc
tcatacaagaccaacttctacgccgagtggcgcaagaagaaccggatcgacgatcgcgtc
tcggagagcgaggacgaggagggctggcggcggcggtgggaggagaggacgcggcggcgc
gtggcgaggcgtaaggggtaa
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