Lethenteron reissneri (Far Eastern brook lamprey): 133349121
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Entry
133349121 CDS
T09663
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lrj00535
]
133349121
Proteoglycans [BR:
lrj00535
]
Extracellular matrix (ECM) proteoglycans
Others
133349121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
VWA_2
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
DUF4992
Copine
Motif
Other DBs
NCBI-GeneID:
133349121
NCBI-ProteinID:
XP_061418307
LinkDB
All DBs
Position
29:2367890..2464379
Genome browser
AA seq
2456 aa
AA seq
DB search
MMRVDVSLLVTAALVASLSVCVVHSQVLAPKNLRFKFLKDNNVQMVWKAPTGKISGYKIV
IAPAPDGVGPSKELKLPKGATKTVLKDFRAGTEYMVTMVAYDGSAESPPIVGKVTIEAKT
TKTTTKKTSKKPSTKNEDRSSSDGCVPGTAVDLVFVVDGSWSVGRVNFEKVKGFMASLVQ
ALVRAASSSSSSSSEEEESSEEADSDSGGGGVRVGIVQYSTDARTEFLPNEHTDAEKLIE
AIQKLPYKGGSTNTGDALQFAQRMMFAEGAGTRDGIPKIAFVITDGKSQDAVAAPAQQLR
SAGIEIFTLGIKEADVAELQEMASAPLERHLFNVASFDDVKGVQGEIISHVCQGVKLQMT
VAQEGESLPASRRRVDLQVSDISTQKMLVSWPSVAGATSYQLALRTADGLSYSDYVITAA
ATSLQQQRLAKLRPDTTYLLSMRAVFPEGPGSETEAEATTAKLNGLLVTQETPSSFRISW
PRQEPSARRLRLSYRPAAGGKATEVTLPPGASSALVRKLRHSTAYSVELTPVMAAGDGPT
LKATATTLEAAKFKPPKNLRVLEEGTEGLRMGWKAGPGKVSGYRVHYAPQGDEDAYGEVM
LGPDDTSVLLRDLRPGTAYGVNVHAEMQGGGESAALEALVTTSEYEAVTAQTPTGRFECS
SQAQVDLVIVLDGSWSIGRINFRLVREFLEQLVQAFDVQADKIRVALSQYSGDTRTEWDL
NTHTTKAALLEAVRSLPYKGGNTNTGMALEHARLQNLKPEAGARPGVPAIVVLITDGKSQ
DDVAQPAAELKSRGVELFAIGVKNADEQELRAIASKPVATHVHQASEFTGMAAIVEGLTR
VVCSRADILFTALRGGGDGGVAVLPPSGLSTSDVTAGGFRVNWKQSVGPVSGYRVVYWPH
EGGPQEEVLVGGSESSALLQNLQPETQYRLHVVALSVGGASGNSSQITETTASLGSSIPE
LRVHDVTASSMRVQWEEAEGATGYTLTYAPVGSGEDEDGDKEEKLGPEVTDFLLDGLEAS
TEYVVTLYAMYDDDEIGEPLTVQETTLPLHSPVGGVRISEVTHNSMRVAWDAPSTRVKKY
RMLYEREDGTGAIEEDIRANVTSAVLKGLKSNTAYLVTVFSVSEDGQSEPLSGRGTTLKN
PTPQSLRFSDVGEKSVRVSWDAAAPDVTMYRVRFTASPSDRTQELVLGGDQTSVLLEKLL
PQTPYEVTVAAVHADEAESSPLSGRVTTGDKSSVLTYTSAPRVPGGPQGPRNMVFSDETT
MSIEVTWEPAEGPVTSYRVTYEPTRRTQREEMVLVPARSNSVVLQPLAPSTSYKVTVTAL
YSDGDGASIAGIGRTSVAAGHAPPNNFRVVDEWYNRFRITWDPPTTPPMGYRIVYQPVEG
GQAYETVVGDGVNAVVMQNLASGTEYLVRIYATYPGGASQPLQGRGRTLYLGIDDLYASS
VEANSFCVQWNPHRDATSYRVTLESLRGEQPMQDFKLGRGVTTHCLDNLLPGVQYRAKVY
ARYRDMEGPPASVLQSIDPGVGMPFYPQAIPTSAPTPPPIRQVCTSAKADLVFLVDSSWS
IGEENFQKLISFVHGIVSSFERVGPSASQVALVVYSDNPRTEFDLNEYENRKEVLGALSS
VRYLGGNTKTGRGLKHVQKELFSSTGGMRKAVPKALILITDGRSQDDVTKTAQELRASGY
SIFAVGIADADMSEMHQVASRPSEKHVYFAEDFDSFRKIENQIMSHLCQVASIPCPIVFM
NGYTVPGFRMMEAFGLVEKTYASLGGVSMQPGSFNEFAAYRLQKGALLKVPTSEVHPEGL
PPEFTVSFLLRVLPETGTDPFSVWELTNQRLKPELGVQLDPGRQSVTLFGLDETGKMQNI
AFTGPEVKTIFYGSFHKVHVAVTKSEVRLFIDCSLVASRPTRPFSNYSTDGFELLGHVAK
SAGNKATSADFQLQMLDMVCNADWGTMDKCCELPSLRVEDSCPSLPHACSCSQDSKGPPG
PPGPLGSPGPKGPRGHPGTPGTQGGAGLRGEQGPRGPPGQRGPQGPSGVSIPGTPGGPGD
KGERGHPGQPGPPGPVGPVGPSGRAGSEGPRGPPGKDGERGTAGPPGLMGPQGPGGVDGM
MGKPGPRGPSGDPGLQGIKGEPGERGDTQGQQVVRMIARQVCENLLNGHMTRISSIINQM
PNSNNGGGRGTPGPPGESGRAGARGPPGETGPMGRPGFPGPSGTPGLRGERGVPGEKGER
GNPGTGTRGPPGPPGPPGVEGIGREGSMGPVGPSGQRGRDGMPGTRGQSGPPGPPGYCDP
SQCGGGGGGGGGYGVAGGYDRRTESGEPEAPAFPVTGYNPYSPYGQPEPYQPEPYQPESY
QPESYGADTYGSQAYNSRAVGGGGGGGGGGGGGSSSSSSSRVTSFTRTDGFEDGDGGGGG
GGSSSRETVISRTVVQPRTYVSSSVRRFQVLEDGTEEELEGDEEEEFFEDSRPPRG
NT seq
7371 nt
NT seq
+upstream
nt +downstream
nt
atgatgagggtggacgtctccctcctcgtcaccgccgccttggtcgccagcctctccgtc
tgcgtcgttcactcgcaagttttggcaccaaagaacctccgattcaagttcctgaaagac
aacaatgtgcagatggtgtggaaggctccgacggggaagatttcgggatacaagatcgtg
atcgctccagcacccgacggcgttgggccgtccaaggagctgaagctgcccaagggagcc
accaagacggtgctgaaggatttccgtgccggcaccgagtacatggtgaccatggtggcc
tacgacggctcggccgagagcccgcccatcgtggggaaagtgacgatcgaggccaagacg
accaaaaccaccaccaagaagacgtcgaaaaagccctctacgaagaacgaagaccgctca
tcttccgacggctgcgtccccggcaccgcggtcgacctggttttcgtggtggacggcagc
tggagcgtcggccgcgtgaacttcgagaaggtcaagggcttcatggcatccctggtgcag
gccctggtgcgtgccgcttcctcctcctcgtcgtcgtcgtcggaggaggaggagtcctcc
gaggaggccgattctgactctgggggcggtggcgtccgtgtcggcatcgtgcagtacagc
acggacgcacgcactgagttcttgcccaacgaacacacggatgccgaaaagctcatagag
gccatccagaagctcccctacaaaggaggcagcaccaataccggagatgcgctgcagttc
gcccagcgcatgatgttcgcggagggcgcgggcacgcgcgacggcattcccaagatcgcc
ttcgtcatcacggacgggaagtcccaggacgcagtggcggcacccgcccagcagctgcgc
agcgcgggcatcgagattttcactctcggcatcaaggaggcggacgtcgcggagttgcag
gagatggcctccgctccgctggagcgccacctcttcaacgtggcgtccttcgacgatgtc
aagggcgtgcagggggagatcatctcgcacgtgtgccagggcgtgaagctgcagatgacc
gttgcgcaggaaggggaatcgttgcccgcgagcaggaggcgcgtggacctgcaggtgagt
gacatctccacgcagaagatgctggtgtcctggcccagcgtcgctggggccacctcctac
cagctggcgctgcgcacggccgacggcctctcctacagcgactacgtcatcaccgctgca
gccacctctttgcagcaacagcggctcgccaagctgaggcccgacaccacctacctgctg
tccatgagggccgtcttccctgaaggcccggggtccgagactgaggccgaagcgactact
gccaaactgaacggcctgctggtcacgcaggagaccccgtccagtttccgcatcagctgg
ccccgccaggagccgtcggcacgccgactccgcctctcgtaccgcccggcggctgggggc
aaggcgacggaggtgacgctgccgcccggcgcctcgtcggccctcgtgcgcaagctgcgc
cactcgacggcgtacagcgtggagctcacgcccgtcatggccgcgggggacgggcccacc
ctcaaggccactgccaccactctggaagccgccaagttcaagccaccgaagaacctgcgc
gtgctggaggagggcaccgagggcctgcgcatgggctggaaggctggccccggcaaggtg
tcagggtaccgggtccactacgccccccagggagacgaggatgcctacggggaggtgatg
ctggggccggacgacacctcggtgctactacgcgacctccggcccggcacggcgtacggc
gtgaacgtgcacgccgagatgcagggcggcggggagagcgccgcgctcgaggcgctggtc
accaccagcgagtacgaggcggtgaccgcgcagaccccgaccggccgcttcgagtgcagc
tcgcaggcgcaggtggacctggtgatcgtgctcgacgggtcctggtccatcgggcgcatc
aacttccgcctggtgcgcgaattcctggagcagctggtgcaggcgttcgatgtgcaggcc
gacaagatccgtgtcgccctgtcccagtacagcggggacacgaggaccgagtgggacctc
aacacgcacaccaccaaggcggcgctgctcgaggccgttcgcagcctgccctacaaggga
ggcaacaccaacacaggaatggccctggagcacgcccgcctgcagaacctgaagcccgag
gccggcgctcgccccggggtgccggccatcgtggttctcatcaccgacgggaagtcccag
gacgacgtggcccagccggcggcggagctcaagagccggggggtggagctgttcgccatc
ggcgtgaagaacgcggacgagcaggagctgcgggcgatcgcctcgaagccggtggccacg
cacgtccaccaggcctccgagttcacggggatggcggccatcgtggaggggctgacccgc
gtcgtctgctcgcgcgccgacatcctcttcaccgcgctgcgaggcgggggcgacggtggc
gtggcggtgctgcccccgagtggcctctccacgtcggacgtgaccgccggcggcttccgc
gtgaactggaagcaatccgtgggccccgtgtccggctaccgagtggtctactggccgcac
gagggcggcccacaggaggaggttctggttgggggttcggagagctcggcgctgctgcag
aacctgcagccggagacgcagtaccggctccacgtcgtggcgctctccgtcggcggagct
tccggcaacagctcgcagatcaccgagaccactgcgtccctgggctcatccattcccgag
ctgcgtgtgcacgacgtgacggcgagcagcatgcgcgtgcagtgggaggaggccgagggc
gccacgggctacacgctcacctacgcccccgtcggcagcggcgaggacgaggacggcgac
aaggaggagaagctgggcccggaggtgacggacttcctgctggacgggctggaggcatcg
acggagtacgtggtgacgctgtacgccatgtacgacgacgacgagatcggcgagccgctc
accgtgcaggagaccactctgccgctgcactctccggtcgggggcgtgcggatctcggag
gtgacgcacaacagcatgcgcgtggcctgggacgcgccgtcgacccgcgtcaagaagtac
cgcatgctgtacgagcgggaggacggcactggcgccattgaggaggacatccgggccaat
gtgacgtcggccgtgctcaaggggctcaagtcgaacaccgcctacctcgtcaccgtcttc
tccgtgtccgaggacggccagtcggagccgctgagcggccgcggcacgacactgaagaac
ccgactccgcagtccctgcgcttctccgacgtgggagagaagagcgttcgcgtctcctgg
gacgcggcggcgcccgacgtcaccatgtaccgcgttcgcttcaccgcgtcgccctcggac
cgcacccaggagctggtgctgggtggggaccagacgtcggtgctgctggagaagctgctg
ccccagacgccgtacgaggtcaccgtggcggcggtgcacgccgacgaggcagaaagcagt
cccctgtcggggcgcgtcaccaccggagacaagtcgtctgtgctcacatacacgtccgct
cctcgcgttccaggtgggccccaggggccccggaacatggtgttctcggacgagacgacg
atgagcattgaggtgacgtgggagccggcggagggccccgtcacctcctaccgcgtcacg
tacgagcccacgcggcgcacgcagcgcgaggagatggtgctggtgccggctcgctccaac
tcggtggtcctgcagccgctggcgcccagcacgtcctacaaggtgacggtgacggcgctc
tacagcgacggcgacggcgccagcatcgccggcatcggccgcaccagtgttgcagccggg
cacgcgccgcccaacaatttccgagtggtggacgagtggtacaaccgctttcgcatcacg
tgggacccacctacgacgcctcccatgggctaccgcatcgtctaccagcccgtcgagggt
ggccaggcgtacgagacggtggtgggcgacggcgtgaacgcggtggtgatgcagaacctg
gcgagcggcaccgagtacctcgtgcgcatctacgccacctaccccggcggggcgagccag
ccgctgcagggccgcggacgcacgctgtacctgggcatcgacgacctgtacgcgtccagc
gtggaggcgaacagcttctgcgtgcagtggaacccccatcgcgacgccaccagctacagg
gtgacgctggagtccctgagaggggagcagccgatgcaggacttcaagctgggccgcggc
gtcaccacgcactgcctggacaacctgctccccggcgtgcagtaccgcgccaaggtgtac
gcgcgctaccgcgacatggagggcccccccgcctccgtgctgcagtccatcgatccgggc
gtcgggatgccgttctaccctcaggcgatccccacctcagcgccgacgcctcctccaata
cgccaagtgtgcacctcggccaaggccgacctcgtcttcctggtggacagctcctggagc
atcggcgaggagaatttccagaagctgatctcgtttgtgcacggcatcgtgtcgtccttc
gagagggtcggccccagcgcctcgcaggtggccctggtggtctacagcgacaacccgcgc
acagagttcgacctcaacgagtacgagaaccgcaaggaggtgctgggggctctcagttcc
gtgcggtacctggggggcaataccaagaccggccgcggcctcaagcacgtgcagaaggag
ctgttcagctccacgggggggatgcgcaaggccgtgcccaaggctctcatcctcatcacg
gacggacgctcgcaggacgacgtcactaagacggcgcaagagctccgagccagcggctac
agcatctttgcggtgggcatcgcggacgcggacatgagcgagatgcaccaggtggcaagc
cgccccagcgagaagcacgtctacttcgccgaggactttgactccttccgcaagatcgag
aaccagatcatgtcgcacctgtgccaggtcgcgtccatcccgtgccccatcgtcttcatg
aatggctacactgtaccaggcttccgcatgatggaggcctttggcctggtggagaagacc
tacgcgtccctgggaggcgtctccatgcagcccggctccttcaacgagttcgccgcttac
cgcctgcagaagggagccctgctcaaggtgcccacaagcgaggtgcacccggaggggctg
ccccccgagttcacggtgtccttcctgctgcgtgtgctgcccgagaccggcacggatcca
ttctccgtgtgggagctcaccaaccagcgcctcaagcccgagctgggggtgcagctcgac
cccgggaggcagtccgtgacactcttcgggctggacgagaccggaaagatgcagaacatc
gccttcacagggccagaggtcaagaccatcttctacgggagcttccacaaggtgcacgtg
gcagtgaccaagtcggaggttcgtctcttcatcgactgctcgctggtggcgtcgcgcccc
acgcgccccttctccaactactccaccgacggcttcgagctgctgggtcatgtcgcaaaa
tccgccgggaacaaagccacctcggcagacttccagttgcagatgttggacatggtttgc
aacgcggactggggtacaatggacaagtgctgtgagctgccgtcgctgagggtggaggac
tcgtgcccgtcgctgccccacgcgtgctcctgctcccaggacagcaaggggccacccggc
cccccgggccccctcggcagccctggcccaaagggaccccgtgggcacccagggacccca
ggaactcagggtggagctgggctgcgtggagagcaggggcctaggggaccgcccgggcag
aggggaccccaagggcccagcggggtctctattcctggaacccctggcggtccgggagac
aagggcgagaggggccatcctggtcaaccaggacccccgggtcccgtgggtccagtgggg
ccttctggacgcgcaggatcggagggcccgaggggcccaccaggaaaagacggggagagg
gggacggccggaccccccggcctcatgggccctcaagggcctggcggcgtggacgggatg
atggggaaaccgggcccacgcggaccatcgggagacccgggcttgcagggtatcaaggga
gagccaggagagaggggcgacacgcaaggccagcaagttgtgcgcatgatcgcgcggcaa
gtttgcgagaacctcctcaacggccatatgacccgcatcagcagcatcatcaaccagatg
cccaacagcaacaacggcggtggccgcgggacgcctgggccacccggggagtccggccga
gctggggcgcggggcccgcccggagagacggggcccatgggccggcccggcttccctggg
ccgtccggcacgccgggcctccgcggggagagaggtgtgcccggggagaagggggagagg
ggaaaccctggcacgggaacacgtggacccccaggacctcccggcccgccaggtgtcgag
ggcatcggccgcgagggcagcatgggcccggtggggccttccgggcagcggggccgggac
ggaatgcccggcacgaggggtcagtcggggccgccgggcccgcccggctactgcgacccg
tcacagtgcggcgggggcggcggcggcggcgggggctacggcgtggccggtggatacgac
cgacggacggaatctggggagccagaagccccggcgtttcccgtcaccggctacaaccct
tacagcccgtacggccagccagagccctaccagccggagccgtatcagccggagtcgtac
cagccggagtcgtacggagccgacacatatggctcgcaggcctacaacagcagagcggtg
ggtggcggcggcggcggcggcggtggtggtggcggcggtagcagcagcagcagcagcagc
cgcgtcaccagcttcacccgaacggacgggttcgaagatggcgatggtggcggaggtggc
ggtggcagcagtagccgggagacggtcatctcgcgcaccgtggtgcagccgcgcacctac
gtgtcgtcgagcgtgcgccgattccaggtgctcgaggatggcactgaggaggagctggag
ggagacgaagaggaggagttcttcgaggattcgagacccccccgcggttga
DBGET
integrated database retrieval system
