Lethenteron reissneri (Far Eastern brook lamprey): 133349556
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Entry
133349556 CDS
T09663
Symbol
DDX20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20 isoform X1
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrj03041
]
133349556 (DDX20)
Enzymes [BR:
lrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133349556 (DDX20)
Spliceosome [BR:
lrj03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
133349556 (DDX20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-GeneID:
133349556
NCBI-ProteinID:
XP_061419103
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All DBs
Position
30:complement(14118777..14155972)
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AA seq
916 aa
AA seq
DB search
MRPGTAHSLASSRRRTRDALGVRGDPGDPEGGEGGPSSAAPTASFSALLLSGRVLAGLSA
AGFRAPSPIQLKAIPLARCGLDLVVQAKSGTGKTCVFATVALEALVSENLAVQVLVLAPT
REIAVQIHSVMLAIGAHVEGLQCHVFIGGTPLSLDQQRLRKCHIAIGSPGRVKQLIELGH
LSVGAVRLFVLDEADKLLEQGSFQEQINWIYSSLPANKQVLALSATYPESLASHLTHYMR
EPTYVRLNPSDMALLGLKQFYKVVPCHAISHHILRDKTQELLQLLSRIPFNQALVFSNMH
SRAQHLADSLSARGFPAACISGGMTQSQRLDAMSKLKHFQCRVLISTDLMARGIDAEKVN
LVINLDVPDDWETYMHRVGRAGRFGTYGLVVTYCSQGEEENLLMKIAAKCNLQLQALPET
ISSDFMAEAFADQEEDAPGDLPVAAVVQPPAWASSRSSSAKHKARPQVPAQRVRAEHSGK
ASARKQHKGGAPHPAGPWEEDEPSYRRVGAGGSSEAARPAQAATKVRVAENGGGGGGCLS
WQPASLHPLPPNRLREAGSSSESNLPQVPPLALFKRSSSTQSGNFAEALADYEYFLCHGV
GKPPEAGAAVGDGGVGEAEKQPTSRGESDPQQSDSCEPACTGRTEGSTAPQSAGDESNDD
EKSVGTHARRHSEREVEREEEQEESSDEEMDDADEEEGSTDTMDSEEVREAGGDDAAPSK
RHDDPRLERTAVRGDGTASGIRAERAERRSGSDAAARAGGATASRAAGGSHLDYNSYFFP
KNYEAKGRHPPSSPKRDAKRDAFPSSATRPALKQKAAAERDTASARPRTTEARPWAAVGY
RAAPGAADGAWPAGAAEGAWPAGAAEGAWPAGDDADPHGRHAAYAAGGGWSAWYRHYWQW
WYYANAVYTRELVKRC
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgggcacggcgcactcgctcgcctcgtcacggcgccgcacgcgggacgcgctg
ggggtgcgcggggaccccggggaccccgaggggggcgaggggggcccctcttctgcggcc
cccaccgcgagcttctcggcgctgctgctgtcgggccgcgtgctcgcggggctcagcgcc
gcggggttcagggccccctcgcccatccagctcaaggccatccccctggcgcgctgcggg
ctcgacctggtcgtgcaggccaagtcgggcacagggaagacatgcgtgttcgccaccgtg
gccctggaggcgctcgtctccgagaaccttgccgtgcaggtgctggtgctggcgccgacg
cgcgagatcgcggtgcagatccactcggtgatgttggccatcggcgcgcacgtcgagggc
ctgcagtgccacgtcttcatcggcggcacgccgctctccctcgaccagcagcgcctgcgc
aagtgccacatcgccatcggctctcccggccgagtcaaacagttgattgagctgggccac
ctctctgtgggtgcggtgcgtctcttcgtgctggacgaggccgacaagctgctggagcag
ggcagcttccaagagcagatcaactggatctactcgagcctgccggcgaacaagcaggtg
ctggcgctgtcagccacctaccccgagtcgctggcgtcacacctcacccactacatgcgc
gagccgacctatgtgcgcctcaaccccagcgacatggccctgctcgggttgaagcagttc
tacaaggtcgtgccatgccatgccatctcacaccacatcctgcgcgacaagacccaggag
ctgctgcagctcttgtcacggattcccttcaaccaggcgctggttttctccaatatgcac
agcagggcacagcacctggcggactctctctcggcacgtggcttcccagctgcatgcatc
tctgggggcatgacccaaagccaacgccttgacgccatgtccaagctgaagcacttccag
tgccgcgtcctcatctccactgacctgatggcgcgcggcatcgacgccgagaaggtgaac
ctcgtcatcaacttggacgtgcccgatgactgggagacctacatgcaccgcgtggggcgc
gccggacgctttggcacatatgggctggtggtgacgtactgcagccagggcgaggaggag
aacctgctcatgaagatcgctgcaaagtgcaacctccagctgcaggccctgcccgaaacc
atctcgtcggacttcatggccgaggcgttcgctgaccaggaggaggacgctcccggggat
cttccagtggcagccgttgtgcagccccccgcgtgggcctcgtcgcgatcctcctcggcg
aagcacaaggcgcgaccgcaagtcccggcccaacgggtgcgggccgagcacagcgggaag
gcctcagctcgaaagcagcacaagggtggggcacctcacccggccgggccctgggaggaa
gacgaacccagctacaggagggttggcgcagggggttcgagtgaggccgcacggccggct
caggccgcgaccaaggttcgtgtggctgagaacggcggcggcggtggtggttgcctgtca
tggcagccggcctcactccacccgcttcctccaaatcggctgcgagaagccggcagctca
tcggagagtaacttaccgcaagttcctcccttggctttgtttaaacgaagctcctccacg
cagagcggaaatttcgcagaggcgctcgccgactacgaatactttctgtgccacggcgtc
ggtaagccccccgaggccggagcggcggtcggcgacggcggcgtgggggaggcggagaag
cagcccacgtcccgtggggagagtgacccccagcagtcggactcctgtgagcccgcgtgc
accggcaggacggaaggcagcactgctcctcagtcggcgggtgacgaaagcaacgacgat
gagaagagcgttggcactcacgcgaggaggcacagtgagagagaggtggagcgggaggag
gagcaagaggagagcagcgacgaggaaatggatgacgcggacgaggaggagggcagcaca
gacacgatggacagtgaggaggtgcgcgaggccggtggagacgacgctgcaccgagcaaa
cgacacgacgacccgcggctggaacgcactgccgtgcgcggggacggaaccgcttcagga
atccgggccgagcgagccgagcggaggtcgggctcggacgcggcagcgcgggcgggtggc
gcgacagccagcagagccgccggtgggagccatttagactacaactcgtacttcttcccg
aagaactacgaggccaagggcaggcatccgccgtccagtccaaaaagagacgcgaagcgc
gacgctttcccgtcgagcgccacgaggcctgcgcttaaacaaaaggccgcggctgagcga
gacacggcgtctgcccggccgagaaccacagaagcgaggccctgggcggcggtgggttac
cgggcggcaccgggggccgctgacggagcttggccggcgggggccgcagagggagcgtgg
ccagcaggggccgcagagggagcgtggccggcgggagatgacgccgaccctcacggtcgc
catgcagcgtacgcggccggcggcgggtggagtgcctggtaccggcactactggcagtgg
tggtactatgccaacgccgtgtacacgagggagctcgtgaagcgctgttag
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