Lethenteron reissneri (Far Eastern brook lamprey): 133349680
Help
Entry
133349680 CDS
T09663
Name
(RefSeq) partitioning defective 3 homolog B-like isoform X1
KO
K04237
partitioning defective protein 3
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04144
Endocytosis
lrj04517
IgSF CAM signaling
lrj04520
Adherens junction
lrj04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133349680
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133349680
09144 Cellular community - eukaryotes
04520 Adherens junction
133349680
04530 Tight junction
133349680
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lrj01009
]
133349680
Protein phosphatases and associated proteins [BR:
lrj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133349680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
Par3_HAL_N_term
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
133349680
NCBI-ProteinID:
XP_061419307
LinkDB
All DBs
Position
31:3313825..3415272
Genome browser
AA seq
1401 aa
AA seq
DB search
MKVIVYFKGTSVLVPCGDGHILVKDLIRQAVTRYKKAFNKDASHPVLVQYLQHADGGILD
SDDRLCDICDDKDKLIAVYEEPGMGASDESPAPQRRSFAEATSPLTPPSDAWAASAFHPY
RPDLGQGSVTPSNLPSGAAARIHHSVDPHRPPGEPPTRCAPLFDGRATPPPPGAAPGMGP
VGQDRGTPSCDAREYEENGNNIVKSSLRKNDLVDWSSCLSDFCKVIRVPSEGGPLGIHIV
HFGTKLRRSLGLLVRGVDEQGRAAHHCWFEKGDCIVTINGNNLLDKTFDQSQQIFMQAMR
VGVMVIHVVPAQQLESYQRALELIDPETDTPNGGLGSMSPTSRFSPMDSRFDFGVSGGGG
GAKAGATETWGGGEPPGSPKGHASPGGIVSGLRKLSTPTGLGCLSRKLSKKASIRLKKGP
EGLGFTIATKEGPIGEHNPLYVKSVLPRGAAVADGRMKPGDQLLEVNGQEVAGKSQEEVV
SLLRATRLGGAVTLSLRRQEDAFLPRPIQKAGGDGDEVEGPAAGTGSAAAPPPETPRRMF
TYEIPLNDSGSAGLGISVKGSREDDTDLGIFVKSIIFGGAASKDGRLRVNDQLVAVNGQS
LLGRTNSEAMEVLRRSMSTDGNVRGMIQIVVARRAVRFSQPIVPQGSSKAVAPGHVDQTH
SDYNSLLYHTIGAHQSGLKNGILGGWGTLPRDRELADSPPPPLPPRRTPLLNHSSWTDGG
SGPRGTQWPPAVTSVGWCHDSEDEPGWSSVQGHGRGLGDDGPADGIRHRKSRSMDIIADE
NDRGRSSQQRAGWNTRSVGPSLGLVMSSSLESLQAAVAAASGANDGGGGERHHDGDFYYD
DDDDDDDYDGVDGGDDMGGHGVFSPGRPRSGLGRGRACNASFRAAIDKSYEEGGGGGGGG
GGAGTGASDAESWVTESRSAGSSRHGRGEGEVSDPDTLEEETVDSPRWRPPKALTNRLQS
LSQPGSPRGRHNGRGTAGKEKKSKPEKERERGKDRDKEKKEGIMKGLGVMFRFGKSKKEE
KAVKVERKGSRRDDSILTDEEINIMRREQERIQAKHRELREQQARDRELKLQRERDSLGA
ASRRGPESRHRPSSPPESRGNAATASIASEPLPSLPAGGGAAALLEVEDDDLDPAYARVS
HFLVAEDRGATAAERAASSAPAATAAPVAATQNALGVVADADIDALYAKVDKTRRLSAPR
SAGGSGGSRPPSSSEERVAQLRHEFQKLRADEARTTDVGSADGMTGPVPGPTEHWSGRHS
VSVEMQQQQRRRQEEREGLLSPTRRRYNSMPRLAKKSPPRSQSGPPGSAGWASRGADDAS
AWNGHTGRPAHPSSCHSLEEEEGGAAVFEFPCPGRRAHSPLRRDVPPTFGGGGVGTPTDA
PDYAAEMQRLAGPAAARPNRV
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgatcgtgtacttcaagggtaccagtgtgctggtgccatgtggggatggccac
atcctggtcaaagatctcatccgacaggccgtgaccaggtacaagaaggctttcaacaag
gacgcgagccaccccgtgctggtgcagtacctgcagcacgccgacggcgggatcctcgac
tccgacgaccgcctctgcgacatctgcgatgacaaggacaagctgatcgcggtgtacgag
gagccggggatgggagcgtctgatgagagcccggcaccccagaggcggagcttcgcggag
gccacgtccccactgacccccccatccgacgcgtgggcagcgtctgccttccacccgtac
cgacccgacctgggccagggcagcgtgacgccgagcaacctgcccagtggagcagccgcg
agaattcatcacagcgtggacccccaccggcctccgggggagcctcctacgcgttgcgcc
cccctcttcgacgggagggcaacccctccgccccccggcgccgcccccgggatgggcccc
gtgggccaggatcgcgggactcccagctgcgacgctcgggaatatgaagagaatgggaac
aatattgtcaagtcatctctgcggaagaacgatttggtggactggtcttcttgtctaagt
gacttttgcaaagtgattcgcgttccgagcgaaggaggacctctgggcattcacatcgtt
cactttgggaccaaattacggaggagcttggggctgctcgtgaggggggtggatgagcag
gggagagcggcccaccactgctggtttgaaaagggcgactgcattgtcaccatcaatggg
aacaacctccttgacaagacgttcgaccagtcacagcagatcttcatgcaggcgatgcgg
gtcggggtgatggtcattcacgtggtgcctgcacagcaattggagagctaccaaagagcc
ctggagttgattgacccagagacggacaccccgaacggcggccttggatccatgagccca
acatctcgcttctctcccatggattctcgctttgactttggagtgtcgggcggtggaggt
ggggccaaagcgggggccaccgagacgtggggagggggcgagcctcccgggtcccccaag
ggccacgcgtcgcccggcggcatcgtgtccggcctgcgcaagctgtcgacgcccaccggc
ctcggctgcctctcgcgcaagctcagcaaaaaagcctccatccggctcaagaaggggcct
gaagggctaggcttcaccatcgccacaaaggaaggcccgatcggcgagcacaaccccctc
tacgtgaagagcgtcctcccccgaggagccgccgtggcggacgggcggatgaagccgggc
gatcagctgctggaggttaacgggcaggaggttgcaggaaagagtcaggaggaggtggtt
tccttgctgagggccacgcgactcggtggcgccgtgaccctgtccttgcgacggcaagag
gacgctttcctgccgcggcccatccagaaggcgggcggcgacggcgacgaggtggagggc
cccgcggcgggcacggggtcggccgccgcacctccccccgaaacgccgaggagaatgttc
acctacgagatccccctcaacgactcgggctccgcagggcttggcatcagcgtgaagggc
tcgcgggaggacgacaccgacctcggcatcttcgtcaagtccatcatcttcggcggagcc
gcctccaaggacgggcggctgcgcgtgaacgatcagctggtggcggtgaacggccagtcg
ctgttgggccgcacaaactccgaggccatggaggtcctgcggcgctccatgtccaccgac
gggaacgtgcggggaatgatccagatcgtggtggctcgccgtgccgtccgcttcagccag
ccgatcgtccctcagggctcctccaaggcagttgcacctggacacgtggatcagactcac
tcggactacaactccctcctttatcacacgatcggagcccaccaatcggggctgaagaat
ggcattctcggagggtgggggacgttacccagggaccgagaattagcggacagcccgcca
ccccctctcccgccacggcgaacgccgctcctcaaccacagctcctggacggacggcgga
tcggggccacggggcacgcagtggcctcctgccgtcacgagcgtgggctggtgccacgat
tctgaggatgagcctgggtggtcgagcgtccaggggcacgggagaggcctcggggacgac
ggccccgctgacggcatcaggcacaggaagtcgcgcagcatggacatcatcgccgacgaa
aacgaccgcggccgctcgtcgcagcagagggcaggctggaacacgaggagtgtaggccct
tcgctcggcctggtcatgtccagctcgctcgagagccttcaggccgcggtggccgcggcg
tcgggagccaacgatggcggcggcggcgagcgccatcacgacggcgacttctactacgac
gacgacgacgacgatgacgactacgacggagtcgacggtggtgacgacatgggcggccac
ggcgtcttctcgccgggacgcccacgatccggccttggccgcgggcgagcttgcaacgcc
agcttccgggccgccatcgacaagtcgtacgaggagggcggcggcggcggcggcggcggc
ggtggtgcggggacgggcgccagcgacgcagagtcgtgggtcaccgagtcgcgcagcgcc
ggctccagccggcacgggcgcggggagggagaggtcagcgaccccgacacgttggaggag
gagacggtggacagccctcgctggcgcccgccgaaggccctcaccaaccgcctccagtcg
ctctcgcaaccgggatccccccggggacggcacaacggccgcggcacggcaggaaaggag
aagaagagcaagccggagaaggagagggagcgcggcaaggacagggacaaggagaagaaa
gagggcattatgaagggactgggagttatgttcaggtttgggaagagcaaaaaagaagag
aaagcggtgaaggtggagaggaagggatcgaggagagatgacagcatcctcaccgacgag
gagatcaacataatgaggagggagcaggagaggatccaggcgaagcatcgcgagctgcgc
gagcagcaggcgcgcgaccgcgagctcaagctgcagcgcgagcgcgacagcctcggcgcg
gcaagccgccgcggccccgagtcccgccaccgtccgtcttccccacccgagtcccgcggc
aatgccgccaccgcctccatcgcatccgagccgctgccatcccttcccgccggcggcggc
gccgcggcactgctggaggtggaggacgacgacctggaccccgcgtacgccagagtgtcg
cacttcctggtggcggaggaccgcggggcgacggcggctgaacgcgccgcctcctcggcc
ccggctgccaccgccgccccggtcgccgctacccagaatgccctgggtgtcgtggcggac
gcggacatcgacgcgctgtacgcgaaggtggacaagacgcggaggttgtcggcgccgcga
tctgccggcggtagcggcggctctcgtcccccctcgagcagcgaggagcgcgtcgctcag
ctgcggcacgagttccagaagctgcgcgccgacgaggcacggacgacggacgtcggctcg
gccgacgggatgaccggaccggttccggggcccacggagcactggagcggccgccactcg
gtgtccgtcgagatgcagcagcagcagcgcaggcggcaggaggagcgcgaggggctgctc
tcgcccacgcggcggcggtacaactccatgccgcggctcgcgaagaagtctcctccgcgg
agccaatcggggcctcccggcagcgcgggttgggcctcccggggcgcggacgacgcgtcg
gcgtggaacggccacactgggcggccggcccaccccagctcgtgccacagcctggaggag
gaggaggggggggcggcggtgttcgagttcccttgccccgggcggcgggcgcacagcccc
ctgcgcagggacgtgccgcccacgtttggcggcggcggcgtcggcacgccgaccgacgcg
ccggactacgcggccgagatgcagagactcgcgggcccggccgccgcccgtccgaaccgc
gtctga
DBGET
integrated database retrieval system
