KEGG   Lethenteron reissneri (Far Eastern brook lamprey): 133349774
Entry
133349774         CDS       T09663                                 
Name
(RefSeq) collagen alpha-1(II) chain-like
  KO
K19719  collagen type II alpha
Organism
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04510  Focal adhesion
lrj04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:lrj00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    133349774
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    133349774
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:lrj00536]
    133349774
Glycosaminoglycan binding proteins [BR:lrj00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   133349774
SSDB
Motif
Pfam: Collagen COLFI VWC TILa
Other DBs
NCBI-GeneID: 133349774
NCBI-ProteinID: XP_061419486
LinkDB
Position
31:complement(9760200..9836858)
AA seq 1476 aa
MFSSVDIRQLGVVLLLAAVTVVRCQEDDLLNCVQEGNVYSDKDIWKPEACTICVCDSGNI
LCDDIVCAEDVEDCPNPEIPDGECCPICPTDIPDPEPTPPPVIKPSIKTGPIGPKGTKGD
PGPKGSNGLNGDPGSSGIPGTPGKPGNNGPRGPAGPPGPPGPSTSTRFGNQAQMAGGFDE
KSGQSMMGMGMTVPGSIGPPGPPGLPGSSGPSGPYGLQGIRGEQGSPGHMGPTGPPGPPG
HPGDDGKNGKSGRPGDRGGPGDMGLVGMNGSPGMHGSKGHRGYNGIPGAKGESGGNGHRG
ERGAAGKNGSPGNVGPQGSTGERGRPGGPGSSGARGSDGLVGSRGPAGPLGSAGASGFVG
QPGAKGELGIGGSRGPAGPQGSHGEVGLPGSPGLVGLPGNNGHNGKSGSKGPLGNPGISG
APGFPGPQGVLGLPGQTGLAGLKGPSGDIGIPGLKGEPGSKGEHGNVGLTGAAGLSGEEG
KRGSPGEQGNVGLAGPGGARGAPGVNGFPGPNGGAGGMGLPGDRGAAGPSGARGLPGEPG
NPGEAGGTGARGAPGSTGSSGPSGKAGAQGAAGQEGRLGRPGSTGGRGSPGPMGFPGPKG
IDGEVGPPGATGGNGNRGPMGESGKDGENGARGAGGPMGASGERGEQGASGLGGPQGVPG
SPGGPGMAGRLGDRGMPGDSGAPGISGTKGEAGTPGERGSTGSSGIQGIRGQAGTPGTSG
AKGEAGVVGPSGPIGNPGASGLPGERGVSGGPGGKGDKGNNGERGYEGNPGKDGARGVIG
PVGPPGPSGAPGDKGEHGASGPLGSAGPAGVNGERGSVGSAGIPGLVGSPGPSGHNGAKG
EKGVAGGKGDNGAPGLHGYIGSSGPQGPAGEGGPKGALGEVGGMGMTGFPGAPGESGTGG
PPGGLGPQGSSGAQGKDGSMGPRGETGTPGEPGEPGPTGLLGNHGERGERGPSGTRGAVG
APGSSGFLGSHGIQGLSGQRGERGVPGLNGPTGSLGKSGPTGEQGERGAPGNVGSPGLNG
APGESGREGSSGTDGAAGRDGLAGVRGDRGEPGTPGRPGNPGNMGNPGLSGANGKDGHKG
ETGPHGESGIVGRPGSAGPLGPQGPNGAHGERGDSGERGIKGHRGWSGFQGLPGLPGPHG
HQGGPGINGGHGPRGPTGPAGGRGKDGHNGQSGPLGPSGHRGRPGEAGSSGPAGPPGIPG
PPGPPGPAANGYGLLPLTGMEKGPDPYPYRYRADEALKEHDAEVDVTLKSLTNQLENIMS
PEGTKTDPARSCRDLMLCHSDWKSGEYWIDPNEGSVLDAMKVWCNMETGETCVYPKPKNV
PSKNWWSNKGSREHKHVWFGEAMPGGFHFSYGDDTMSANIAEVQLNFLRLVAAEASQNIT
YLCRNSVAYADATGSLRKAVRLMGSGELELRADGKNRFTYSMLEDGCAKHTGEWGKTVLQ
YKTNKPSRLPIVDIAPLDIGGPEQEFGVEIGPVCFL
NT seq 4431 nt   +upstreamnt  +downstreamnt
atgttcagctctgtggatatacggcaattgggagtggtgctgctgctagcggcggtgacg
gtcgtcaggtgccaagaggacgacctcttgaattgtgtgcaggaagggaatgtatacagc
gacaaggacatctggaaaccggaggcctgcaccatctgcgtgtgtgacagtggtaacatc
ctgtgcgatgacatcgtctgcgccgaggacgtggaggattgccccaacccagagatcccc
gatggagagtgctgccccatctgccccacagatatcccagatccggaacccacacctcct
cctgtaataaagccctcaattaagactggtcccattggccccaagggcacgaaaggagat
cccggcccaaaaggatccaatgggctgaacggagatccgggctcctcgggtatccccggg
acccccggcaagcctggcaacaacggcccccgaggaccagcagggccccctggacccccc
ggcccatccacctccacccgctttggaaatcaagcccaaatggcaggaggattcgacgag
aagtcaggacaatccatgatgggaatgggaatgactgttccgggctccattggacctccg
ggtcctcccggactgccagggtcttcaggtccttctggtccttatggtttacaaggcatc
cgtggagagcaagggtctccgggtcacatgggtccaactggtcccccaggcccccctggg
catcctggagatgatggcaagaacgggaagtcgggccggccaggggatcgtggcggaccg
ggtgacatgggtcttgttggaatgaacgggagccccggaatgcacggatccaagggacac
aggggatacaacgggattcctggagccaagggagaatctggagggaatggtcaccggggg
gagagaggtgcggctggaaagaacggttccccaggcaacgtgggcccccagggatcaact
ggtgagcgaggacgtcccggagggcctggttctagcggtgcccgtggaagcgatgggctg
gtggggtcaaggggaccagctggtccactgggcagcgctggggcatctggctttgttgga
cagcccggagctaagggtgagctcggcattggtgggtcgcgtgggcctgcggggccacag
gggtcacatggtgaggtcggcctgcctgggtctcctggcctcgtcgggctcccgggaaac
aacggacataatgggaaatctggaagcaaaggaccacttggaaaccctggcatttctgga
gcccccggcttccctggcccccagggagtgttgggcctcccaggtcaaaccggcctcgct
ggcctcaaggggccctctggcgatattggaattcccggcttgaagggagaaccaggctcc
aagggtgaacacggcaacgttggtctcacgggagccgcgggtttgtctggagaagagggc
aagcgtggcagccccggcgagcagggcaacgttggcttggccggcccgggtggtgccagg
ggtgcccctggagtcaatggcttcccaggtcccaacgggggtgcgggtggcatgggcctg
cctggtgatcgaggagcggccggtccttccggagccaggggcctccccggcgagcccggc
aaccccggcgaggccggtggcacgggagcgaggggtgcgccggggtctactggcagcagt
ggcccttctggaaaggctggtgctcagggtgcagctggacaagagggccgattgggtcga
ccaggctccaccgggggccgaggatctcctggtcccatgggattccctgggcccaagggc
attgatggggaggtcgggccacccggtgccactggcggcaatggaaaccgcggtcccatg
ggcgagtctgggaaggatggggagaatggagcacggggagcgggcggacccatgggcgca
agcggagaacgaggagagcagggggcctctggactgggtggcccacagggtgtgcctggc
tcccctggtggacctggcatggctggcagactgggtgacagaggaatgccgggagattct
ggtgcgcctggaatttctggtaccaagggtgaggctggcacacctggtgagcgcggttct
actggttccagcggcatccagggcatccgtggtcaggctggaacccccggcacctctgga
gccaagggcgaggctggagttgttgggccatccggtcccattgggaaccccggtgcctct
gggctgccgggtgagaggggagtaagcggaggccccggaggcaagggggacaagggtaac
aacggcgagagaggctacgaaggaaaccccggcaaagacggagcccgaggcgtgattggt
ccggttgggcctccaggccctagcggtgctccaggcgacaaaggcgagcatggtgcctct
ggtcctcttgggtcggccggccccgcaggagtgaacggcgagcgaggcagtgtcggctcc
gctggaatccctggactcgtcggatctcccgggccgagcggccacaatggggccaagggt
gagaagggagtggccggtgggaagggtgataacggtgcccctggcctccatggatacatc
gggtcctcgggcccacagggaccggctggagagggcggccccaagggagctcttggtgaa
gttggcggcatgggcatgactggattcccaggagcgcctggtgaatctggcactggtggt
cctccgggaggcctcggtcctcagggttcatcgggagcgcagggcaaggacggcagcatg
ggccctcgcggcgagactggcacaccaggcgagcccggggagcccggccccaccggcctc
cttggcaatcacggagagcgtggcgagaggggcccaagcggaacccggggcgccgttggg
gcaccgggcagcagtggcttcctgggttctcatggtatccagggtctgtccggccagcgt
ggtgagaggggcgtccctgggctcaacggtcctacgggctctctcggcaaaagcggtccc
acgggtgaacaaggcgagcgtggagctccgggtaacgtgggctccccgggtctcaatggc
gctcccggcgagtccggccgtgagggttcatctggtactgatggagctgccggtcgcgac
ggccttgctggcgtgcggggagaccgcggtgagcctgggacgcccggccgcccaggaaat
ccaggcaacatgggcaaccctggcctttcaggagccaacggcaaggacgggcacaagggt
gaaacgggccctcacggagaatcaggcatcgtgggcagacctggctctgcagggccactt
ggccctcaggggccgaacggagcccatggcgagaggggcgactcaggcgagaggggaatt
aagggccaccgcggctggagcggtttccagggtctgcctggcctgccgggtcctcacggt
caccaaggaggccctggtatcaatggcggccatggtccaaggggacccacgggcccagcg
ggcgggcgtggcaaggatgggcacaacggacagtctggccccctcgggccctctggccac
cgcggtcgtccaggcgaggctggcagctctggccctgctggtccaccaggtatccctggg
cccccaggccctcccggccccgcagcaaatggctacggactgttgcccttgactggcatg
gagaagggaccggacccatacccttaccggtaccgtgccgatgaggcgctcaaggagcac
gatgctgaggtggatgtgaccctcaagagcctcaccaaccagctcgagaacatcatgagc
cctgagggcaccaagaccgacccggctcgcagctgtcgagacctcatgctctgccactct
gactggaagagcggtgagtactggatcgaccctaacgagggctcagtgctggacgccatg
aaggtctggtgcaacatggagaccggggagacctgcgtctatcccaagcccaagaacgtt
cccagcaagaactggtggagcaataagggcagccgcgagcacaagcatgtctggtttgga
gaggccatgcccggtggcttccacttcagctacggagacgacaccatgtcggccaacatc
gccgaggtgcagctcaacttcctgcgcctcgtggcagccgaggcctcgcagaacatcacg
tacctctgccgtaacagcgtggcgtacgcggatgccacgggcagcctgcgcaaggccgtc
cggctcatgggctcgggcgagctcgagctgcgcgcagatggcaagaaccgcttcacctac
tccatgctggaggacggctgcgcgaaacacactggcgagtggggaaagacagtgctgcaa
tacaagacaaacaagccgtctcgtctgccgatcgtggatatcgcacctctggacattggt
ggacccgagcaagagtttggcgtcgaaattggccccgtctgcttcctgtaa

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