Lethenteron reissneri (Far Eastern brook lamprey): 133349827
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Entry
133349827 CDS
T09663
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133349827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrj03041
]
133349827
Enzymes [BR:
lrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133349827
Spliceosome [BR:
lrj03041
]
Complex C
Other components
Step II factors
133349827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
GIPC1_GH2
AAA_22
AAA_19
nSTAND3
ABC_tran
T2SSE
AAA_16
PhoH
TsaE
Sigma54_activ_2
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
133349827
NCBI-ProteinID:
XP_061419611
LinkDB
All DBs
Position
31:13593128..13614911
Genome browser
AA seq
1206 aa
AA seq
DB search
MADPAEIRRLEQLSLVSKVCTELDNHLGINDKDLAEFVISLSEKNNTFEKFKKVLEQNGA
EFSDPLINNLLRLIQTMKPAPKTSSDNSAEASSSSTRTKQEKMKELFPALCRADDDAARQ
TMLKAEDIKVAVDAMAELEALIPKLSGQETKHGSEASGSKRSDSRERDFRHEDRHRRRRH
RSRSRSRSRSRMRRHSRSRSPSHDRSRSSRHERRRHRERTRSNSPEQEKQSERWPDRHVD
KPPPEEPNVGDIYSGKVSSIMQFGCFVQLEGLRKRWEGLVHISEIRREGRVASVADVVTK
GQKVKVKVLSFTGTKTSLSMKDVEQETGEDLNPTRRRLLVADAGEEAAAARNPDRPSHMP
LVSAPEVEDDLLERKRLTKISDPEKWEIKQMIAANVLPKEEYPDFDEETGVLPKIDDDED
EDVEIELVEEEPPFLRGHTKHSTDLSPVKIVKNPDGSLSQAAMMQSALAKERREMKQAAR
EAEMDSIPTGLNMHWIDPLPDAEGRQIAANMRGLGLMPPDMPEWKKHAFGGNKASYGKKT
AMSIIEQRESLPIYKLKEQLVQAVNDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIG
CTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETKIKYMTDGMLLRECLIDS
ELMQYSVVMLDEAHERTIHTDVLFGLLKKTIKRRLDMKLIVTSATLDAVKFSQYFYEAPI
FTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILLFLTGQEEIDTACEILY
ERMKSLGPEVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYV
VDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKTYRLYTERAYRDEMLT
TNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYQLGALDDEGLLT
RLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAK
FNQAEGDHLTLLAVYNSWKNNKFSNAWCYENFVQARTLRRAQDVRKQMLGIMDRHKLDVV
SCAKATVRVQKAVLSGFFRNAAKKDPQEGYRTLVDQQVVYIHPSSALFNRQPEWVVYHEL
VLTTKEYMREVTTIDPKWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRIS
RAFRRR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccggccgagatccgtcgcctggagcagctgtccctggtgtccaaggtctgc
acggagctggacaatcacctgggaattaacgacaaggacctggctgaatttgtcatcagt
ttgtcagagaagaacaacacttttgaaaagttcaaaaaagtcctggagcaaaatggagcg
gagttttcggacccgcttattaacaacttgctgcgtctcatccagaccatgaaacctgct
cccaagacatccagcgataactcggctgaggcttcatcgtcgtcaaccaggacgaaacag
gagaagatgaaagagcttttccctgccctctgtagggcggatgatgatgctgcacggcaa
accatgctcaaggctgaagacatcaaagtggccgtggatgccatggcagagttggaggcc
ctgatcccgaaactctcggggcaggaaaccaagcacgggtcagaggcaagcggcagcaag
agaagcgacagccgcgagcgggatttccggcacgaggaccgacaccgaagacggcgccat
cgctcccgctctcgctcccgctcgcgttcccgtatgcggcgccattcgcgctcacgctcg
ccctcccacgaccgctcccgttcgtcacgccacgagcgccggaggcaccgtgaacgcacg
cggtcaaatagccccgagcaagagaagcagtcggagcgctggcccgaccgccacgtggac
aaacctccgcccgaggagcctaacgtgggcgacatctacagcggaaaggtgtcgagcatc
atgcagtttggttgcttcgtgcagctcgagggactccggaaacgctgggaggggttggtt
cacatctctgagatccgacgagagggccgcgtcgccagcgtggctgatgttgtcaccaaa
ggtcagaaggtcaaggtcaaggtgctatccttcaccggaaccaagaccagcttgagcatg
aaggacgtggagcaggagacgggcgaggacctgaacccaacacggcggcgcctgctggtg
gctgacgccggcgaggaggcggcggccgcgagaaaccccgaccgcccatcgcacatgccg
ctcgtgagcgcgcccgaggtggaggacgacctgctggagcgcaagcgtctcacgaagatc
tctgaccccgagaagtgggagatcaagcagatgattgcagcaaatgtccttccaaaagaa
gagtacccagatttcgatgaggagactggagttttacccaagatagacgacgatgaagat
gaggacgtggagattgaactggtggaggaggagcctccgttcctgcgaggccacactaag
cacagcactgacctcagccccgtcaagatcgtcaagaacccggacggctcgctatcgcag
gccgccatgatgcagagcgctctggccaaggagcggcgcgagatgaagcaggcggcacgc
gaggctgaaatggattcaatcccaacgggcctcaacatgcactggatcgatcctcttccc
gacgccgagggtcgccagatcgcagcaaacatgcgaggcctgggcctgatgccgcccgac
atgccggagtggaagaagcacgcatttggcggcaacaaggcctcgtatggtaagaagacg
gccatgtcaatcatcgagcagcgagagagcctgcccatctacaaactgaaggagcagttg
gtgcaggccgtgaacgacaaccagatcctgatcgtgatcggtgagacgggctcgggcaag
acgacgcagatcacgcagtacctggcggaggcgggctacacgacccgcgggaagatcggc
tgcacgcagccccgtcgtgtggccgccatgtccgtggccaagcgcgtctccgaggagttc
ggctgctgcctcgggcaagaggttgggtacacgatccgttttgaggactgcaccagtcct
gagacgaagatcaagtacatgacggacggcatgctgctgagggagtgtctcatcgactcg
gagctcatgcagtactccgtcgtgatgttggacgaggcccatgagcgcaccatccacact
gacgtgctcttcggtctcctcaagaagaccataaagcggcgtctggacatgaagctgatt
gtgacgtcggccacgctggacgccgtcaagttctcgcagtacttctacgaggcacccatc
ttcaccatccccgggcgaacctaccccgtggagatcctctacaccaaggagcccgagacg
gactacctggacgcgtcgctcatcaccgtcatgcagattcacctcaccgagccgccaggc
gacatcctgctgttccttacgggtcaggaggagatcgacacggcttgcgagatcctctat
gagcgcatgaagtcgctgggccccgaggtgccggagctcatcatcctgcccgtctactct
gcactgcccagtgagatgcagacacgaatcttcgaccctgcgcccccgggcagccgaaag
gtggtcattgccaccaacatcgcggagacatcactaaccattgatggcatctactacgtg
gtggaccctggcttcgtcaagcaaaaggtttacaactccaagacgggcattgaccagctg
gtggtcacccccatctcacaggcccaggcgaagcagcgtgcgggtagagccggccgcacg
ggccccggcaagacttaccgcctgtacacggaacgtgcctaccgtgacgagatgctcacc
accaacgtgcccgagatccagagaaccaaccttgccagcaccgtgctgtcgctcaaggcc
atgggcatcaacgacctgctgtcctttgacttcatggatgcccctcccatggagacgctc
atcaccgccatggaacagctctaccagctgggggcactggacgacgaggggctgctcacg
cgtttgggtcgccggatggcagagttccccctggagcccatgctgtgcaagatgctcatc
atgtccgtacacctgggctgcagcgaggagatgctcaccattgtgtccatgctgtccgta
cagaacgtcttctaccgccccaaggataagcaagcgcttgccgaccagaaaaaggccaag
ttcaaccaagcggagggagaccacctcactctgctggccgtctacaactcgtggaagaac
aacaagttctccaacgcatggtgctacgagaactttgtgcaggcgcgcacgctccgtcga
gcacaggatgtgcgcaagcagatgctgggaattatggacaggcacaagctggacgtggtg
tcgtgtgccaaggccacagtacgcgtgcaaaaggccgtgctgagtggcttcttcaggaac
gcagcaaagaaggaccctcaggaaggctaccgcacgctggtggaccagcaggtggtctac
atccacccgtccagcgcgctcttcaaccgccaaccagagtgggtggtgtaccacgagctg
gtgctcaccaccaaggagtacatgcgcgaggtcaccaccatcgaccccaagtggcttgtg
gagtttgcgccggccttcttcaaggtgtcggaccccacgcgtctcagcaagcagaagaag
cagcagcgcctggagccgctgtacaaccgctacgaggagccaaacgcgtggagaatctcc
cgcgccttccgccgtcgataa
DBGET
integrated database retrieval system
