Lethenteron reissneri (Far Eastern brook lamprey): 133351785
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Entry
133351785 CDS
T09663
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03013
Nucleocytoplasmic transport
lrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133351785 (UPF2)
03015 mRNA surveillance pathway
133351785 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133351785 (UPF2)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133351785 (UPF2)
mRNA cycle factors
P-body specific factors
133351785 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
133351785
NCBI-ProteinID:
XP_061423290
LinkDB
All DBs
Position
38:4122963..4155438
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AA seq
1276 aa
AA seq
DB search
MPGEQQQQSAGSDAESVRTPGRPKEKASGGAGTDKARGARPRLTDDEKRKRLDEEKRRKE
EEEEKKKLEEEERVRAEQEELQKVEEEQKMAELESQRKEEEKAAAAQKEIEEARQLQAEM
QERCTWKQEQRVLNQAAHENRPEEGFFGRLDSSLKKNTAFVKKLRTLTEQQRDSVSSDFN
SLNLSKYIGEAVSALVEARLKTSDVGCAVHVCSLFHRRYAEFAPLLLQAWRRHLEARKDD
RAAASIGKLRTDLRFIADLTTIAIFSDREGLSLLYEQLKMIVAADRETHAHISVVISFCR
HCGEDVVGLVPRKARLLLERHGTCMPRSEIFGPEKQQPFVVLLRDYFSSLSRQLKKDHRE
LQNLERQNRRILHTKGELSEERHKQHEECAVSYQKLLVSTQSLAELLDETMPDLPEDKSA
QEDQGMGIDLFTPGRAGELELEGGLWEDEDSRSFYESLIDLKAFVPAILFKDSEKTGPLQ
GKDAELGGMSGAEELERELETLEILAEEAEVAAVTTDDDASTMGAGPEDEVEDPVDKLLK
DDPEPEDEEASVASHLRMIVEAFLQQLLNCVNRDLIDKAATDFCMNMNTKANRRKLVRAL
FSVPRQRLDLLPFFGRLVATLHPCMPDVAEDLTSMLKSDFKFHVRKKDQINIETKNKTVR
FIGELTKFRMFPSNETLYCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDTHLRTNVLL
EQMMRKKQAMPLDERYITTVENAYYHCNPPVVERTVQQARPPVHEYVRRLLYKDLSKVTT
ERVLRQMRKLAWGDPEVKRYATKCLVSVWNVKYNNIHCVANLLAGLVPFQEDLGVHTVDA
VLEDIRLGMEINHPKFNQRRISSAKFLGELYNYRMVESAVVFRTLYSFLTFGVGPDGVPG
ALDPPDSLFRIRLVCTLLDTCGQYFNRGSSKRKLDCFLLYFQRYVWLKKTQEIWTATSPF
PIDVDYLISDTLELLRPKFRLCASLEEAMGQLAELEREYRSKLGLDGGGKTGGSDVLGGS
SSGVADEEDDDDDEEEEGAETEEQSANESDANDQDDEDGTDEEEDEDDEEENTDYMTDSN
KENDTDEDGGQVTMKDGGGLKRVACAEDDEFISAFDKMMVENMQQRSSEAVKVHQLDVAI
PLGLRGQVKPGQAAPGEPALEGDTTSCQDIGTMQFVMLTRRGNKQQLRPVSVPITSQLAA
SRKTQQQAEREERQRVKKLTLDINERQEQEDYQEMLQSLAARPAQANTNRERRPRYVHPK
GAPNADLIFKTGGRRR
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgcctggtgaacagcagcagcaaagcgcggggtcggacgcggagagcgtgaggaccccg
ggccggcccaaggagaaggcgagcggtggggccggcaccgacaaggcacggggagcgcgc
ccgcgccttacggacgatgaaaaacgcaagcggcttgacgaggagaagcggcgcaaggag
gaggaagaggagaagaagaagctggaagaggaggagcgggtgagggctgagcaagaggaa
ctgcagaaggtggaggaggagcagaagatggcggagttggagagccagcggaaagaagag
gagaaggcggccgctgcacagaaggagattgaagaagcacggcagctgcaggccgagatg
caggagcgctgcacgtggaagcaggagcagcgggtgctgaaccaggcggcgcacgagaac
cggcccgaggagggcttcttcggccgcctcgactcgagcctcaagaagaacacggcgttt
gtgaagaaactgcgcacgctcacggagcagcagcgcgactcggtctcgtccgacttcaac
tcgctcaacctcagcaagtacatcggcgaggcggtgtccgccctcgtcgaggcccggctc
aagacgtcggacgtcggctgcgccgtgcatgtgtgctcgctcttccaccgccgctacgcc
gagttcgcgccactgctgctgcaggcgtggcgccggcacctggaggcgcgcaaggacgac
cgcgcggcggcgagcatcggcaagctgcgcaccgacctgcgtttcatcgccgacctgacg
accatcgccatcttctcagaccgcgagggcctgtcactcctttacgagcagctgaagatg
atcgtagcagccgaccgtgagacgcacgcgcacatctccgtggtgatcagcttctgtcgg
cactgcggcgaggacgtggtgggcttggtgcctcgcaaggcccggctgctgctggagaga
cacggcacctgcatgccgcgcagcgagatcttcgggcccgagaagcagcagccgttcgtg
gtgttgctgcgcgactacttcagctcgctctcccgccagctcaagaaggaccaccgcgag
ttgcagaacctcgaaaggcagaaccggaggatcctgcacaccaagggggaactcagcgag
gagcggcacaagcagcacgaggagtgcgccgtctcctaccagaagctgctggtcagcacg
cagagcctggccgagctgctcgacgagaccatgcctgaccttcctgaggacaagtccgct
caagaggaccagggcatggggattgacctcttcactccgggccgggccggcgagctggag
ctggagggtggcctgtgggaggacgaggactcgcgctccttctacgagagcctcatcgac
ctgaaggcgttcgtgccggccattctgttcaaggacagcgagaaaacgggcccgctgcag
ggcaaggacgccgagctgggcgggatgagcggtgccgaggagctggagcgagagctcgag
acgctggagatcctggccgaggaggccgaggtggcggcagtgactacagacgacgatgcc
tcgacgatgggagccgggccagaggatgaggtggaggaccccgtcgacaagctcctcaag
gatgatcccgagccggaagacgaggaggcgagtgtggcgagccacctacgtatgatcgtg
gaggccttcctccagcagcttctcaactgcgtcaatcgggacctcatagacaaggcagcg
accgatttctgcatgaacatgaacaccaaggcaaaccggcgcaagctggtgcgggcactg
ttcagcgtgccacggcagaggctggacctgctgccgtttttcggtcgcctcgtggccacg
ctgcacccgtgcatgccggacgtggcggaggacctgacctcgatgctcaagagcgacttc
aagttccacgtacgcaagaaggaccagataaacatcgagacgaagaacaagacagtgcgc
ttcatcggggagctcactaagttccgcatgtttcccagcaacgagaccctctattgcctc
aagatgctgctgtcggacttttcgcaccaccacatcgagatggcgtgcacgctgctggag
acgtgcggccgcttcctcttccgctcgcccgacacgcacctgcgcaccaacgtgctgctg
gagcaaatgatgcgcaagaagcaggccatgccgctggacgagcgctacatcacgacggtg
gaaaacgcgtactaccactgcaacccgcccgtggtggagcgcaccgtgcagcaggcccgc
ccacctgtgcatgagtacgtgcgccgcctgctctacaaggacctgtccaaggtcaccacc
gagcgggtgcttcgtcagatgcgcaagctggcgtggggggaccccgaggtgaagcggtac
gccaccaagtgcctggtgagcgtgtggaacgtcaagtacaacaacatccactgcgtggcc
aacctgctggcggggctggtgcccttccaggaggacctgggcgtacacacggtggacgcg
gtgctggaggacatccgccttggaatggagatcaaccatcccaagttcaaccaacgccgc
atcagcagcgccaagttcctgggcgagctctacaactaccgcatggtggagtcagccgtg
gtgttccgcacgctctactcgttcctcacgttcggcgtgggccccgacggcgtgccgggg
gctctcgatccgcccgacagcctcttccgcatccgcctggtgtgcacgctgctcgacacg
tgcggccagtacttcaaccgcggctccagcaagcgcaagctcgactgcttcctcctctac
ttccagcgctacgtgtggttgaaaaagacccaagagatctggaccgcgaccagcccattc
cccatcgacgtcgactacctaatctccgacacgctggagctgctgcggcccaagttccgg
ctgtgcgcgtcgctcgaggaggccatggggcagctggcagagcttgagagggagtaccgc
tccaagctcgggctggacggcggcggcaagactggtggctcggacgtgctggggggatca
tcatctggggtggccgacgaagaggacgacgacgatgatgaggaggaggaaggagcggag
acggaggagcagtcagctaacgagagcgacgctaacgaccaagacgatgaggacgggacg
gatgaggaggaggacgaggatgacgaggaggagaacacggattacatgacggattccaac
aaggagaacgacaccgacgaggatggagggcaggtgacaatgaaggacggtggggggctg
aagcgcgtcgcgtgcgccgaggatgatgaatttatctcggccttcgacaagatgatggtg
gagaatatgcagcagcggagcagcgaagcggtgaaagtgcaccagctggacgtggccatc
ccactcggcctgcgcgggcaggtcaagcctggccaggcggcgcccggagaaccggcgctc
gagggcgacaccacgagctgtcaggacattggcaccatgcagttcgtcatgctgacccgg
cgcggcaacaagcagcagttgcgcccggtgagcgtgccgattacgtcgcagctggcggcg
tcacggaagacgcagcagcaggcagagcgcgaggagcgccagcgcgtcaagaagctcacg
ctcgacatcaatgagcggcaggagcaggaggactaccaggagatgctgcagtccctggcc
gcgcggcctgcgcaggccaacacgaaccgcgagcgccggccgcgctacgtccaccccaag
ggcgcccccaacgccgacctcatcttcaaaaccgggggccgacggcgctga
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