Lethenteron reissneri (Far Eastern brook lamprey): 133351850
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Entry
133351850 CDS
T09663
Name
(RefSeq) protein patched homolog 1-like isoform X1
KO
K11101
patched 2
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
133351850
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Ortholog
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GFIT
Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
TFIIA
Motif
Other DBs
NCBI-GeneID:
133351850
NCBI-ProteinID:
XP_061423400
LinkDB
All DBs
Position
39:complement(3020435..3080041)
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AA seq
1529 aa
AA seq
DB search
MDTQRPAEAGGPRRYQEAPGAPPPPPPPSSSYKGVPARSCTPARLRERLEAASFSLGCKL
QRNCGKALFVGVLAFCAFAVGLRAARMETDVEALWVEVGGRLSREVSYTHEHLGPDSALG
LQLLIQTPRGANNEGGKDEGNAAGNAGVLTPDGLAQHLRSAHAASRVSVNLYGRNWDLNK
ICYKPGIPLTENRVLDQAMEKLIPCVIVTPLDCFWDGAKLQGGKFYLSSTLEYRWTNLDP
QAFLQGFQALRDLDLGDLEELLSRAEVGRGYVDRPCLDPTEPDCPASAPNKQRREPLDIG
RELSKGCHGFSRKFMSWQDELIIGGARHNSSGSLASAEALQTMFVLMNAQQLYETYKDNY
EVYDLRWTLDKAAAILDSWQRKFVEVVHASVPADSAHDVLPFSTATIEGIMKSFSEMSVM
RVAGGYVLMLVYACVVMMRWECGRSHGAVGLAGVLLVALSVASGLGFCSIVGLTFNAATT
QVLPFLALGVGVDDMFLLAHAFVGQSDNIPFKYRLGECLRETGTSVVLTSVNNLVAFLMA
ALIPIPALRNFSLQAAVVIVFNLAMMLLVFPAVLALDLRRRRQNRMDFLCCLPSPCADRV
LTVQPGEYREEHGSLGSHSSSSTTTTASGGSSGGTDAASVVAPHAVAATTASFPVHGHAT
AFTMRATVTAVARCDPSGQHVITVLPAAAPRVTAYAVPVEVAAAPSPCSRHSSCSSSAAA
PGPDACTSTRDLIAQVEEAAGAAGAGAPAPGGECGDCSPRATGCLGKWTASEFARDRYAP
LLLRTPVKVVAVVSSLALLATCLYGTTLVRDGLDLMDVVPRGTRERAFLEAQARHFSLYA
VHVVTTAGVDYPRAQAQLYALHERVGRVRHAVRHRDGAIPKMWLHYFRDWLLDLQKAFDA
EWASGRISRESWRNGSEAAVLAMHLMVQTGDREQPINYGQLPAKRLVGSDGMIDPDTFYE
CLTAWASSDPLGYAASQAAIHPQLPEWIHDKYDSDPEGMHIQAAAPIEYTHFSFFLGGLR
ETPDFLSVIETVRAITEEFSERGVPCYPSGLPFLFWEQYVGLRQWLLLSVVLALAAAFLV
TAACLLSPWTAAIVVLVLAAMTVELFGVMGFLGVRLSASPVVTLVLSVGIGVEFTVHTAL
AFTNATGGRDRRVAAALEKTLVPVLHGAASTFLGVVMLAASEFDFIVRYFFGVLTIMTLL
GVFNGLVLLPVLLSVLGPPSQAARKRTGGVRVDAPPPPSARPACRCAAYAASLRYLDGPE
APRAGTEETGEELRPYCERAGHAGAPAAALPLPHVMVEASDSGFAPRVSLMQVKIPDADG
AQDILQEPHRHNGGASAHQLHSARSREAQENLRNQSHQQQQWQQQQQWQQQQQHIHPHQH
HYRRQRRPRSGDPAAREPRRTQTPAPPGCCGVIPTVTATTSVTVAITGGMPGAPLGAAVA
AAAAAAAAGEGRRAPGCKVRTNPFEGYAHAAYDDSDEGCFPDSPEAARPGSPGSPGLPGT
PDGHEDRDSLRVEDLECIAPRVHGPAGAF
NT seq
4590 nt
NT seq
+upstream
nt +downstream
nt
atggacactcagcggccggcggaggcgggcgggccgcgccggtaccaggaggcccccggt
gcgccaccaccaccaccaccgccgtcatcatcctacaagggggtcccggctcgctcctgc
accccagctcgcctccgggagcgcctggaggccgcctccttctcgctgggatgtaaactc
cagcgcaactgcggcaaggctctgttcgtgggcgtcctcgccttctgcgccttcgcggtc
gggctgcgcgcggcgaggatggagacggacgtggaggcgctctgggttgaagtgggcggg
cggttgagccgcgaggtgtcgtacacgcacgagcacctgggccccgactccgcactgggc
ctgcagctgctgatccagactccgcgcggggccaacaacgaggggggcaaggacgagggc
aacgccgcgggcaacgccggcgtgctcacgcccgacggcctcgcccagcaccttcgctcc
gcgcacgccgccagccgcgtctccgtcaacctctacggccggaactgggacctgaataaa
atctgttacaaacctgggattccgctgacggagaaccgcgtgctcgatcaggcgatggag
aagcttatcccgtgtgtgatcgtgacgccgctcgactgcttctgggatggagccaagctt
cagggagggaagttttacctctcgagcacactggagtaccgctggaccaacctggacccg
caggccttcctgcaaggcttccaggctctgcgcgacctcgaccttggcgaccttgaggag
ctgctgtcccgggccgaagtcggccgcggctacgtggaccggccctgcctcgaccccacg
gagcccgactgccctgccagcgcccccaacaagcagcgccgcgagcctctggacattggg
cgggagctgtccaagggctgccatggcttctcgcgcaagttcatgagctggcaggacgag
ctgatcatcggcggagcgcgccacaacagcagcggctcgctggcgagcgccgaggccctg
cagaccatgttcgtgctgatgaacgcgcagcagctctacgagacctacaaggacaactac
gaggtgtacgacctgcgctggacgctcgacaaggcggccgccatcctcgattcctggcag
cgcaaattcgtcgaggtcgtgcacgccagcgtgcccgccgactccgctcacgacgtgctg
cccttctccaccgccaccatcgagggcatcatgaagtcgttctcggagatgagcgtgatg
cgtgtcgccgggggatacgtcctcatgctggtgtacgcgtgcgtggtgatgatgcgctgg
gagtgcgggaggtcccacggagccgtgggccttgccggggtcctcctcgtcgccctctcc
gtcgcctcgggcctcgggttctgctcgatcgtcggcctcacgttcaacgccgccaccacc
caggtcctcccatttctggcgcttggggtgggagtggatgatatgttcctgctggctcat
gctttcgtgggacagagcgacaacatccccttcaagtaccggctcggggagtgcctacgc
gagacgggcaccagcgtggtgctcacctccgtcaacaacctcgtggccttcctcatggcc
gcgctcatccccatcccggcgctgcgcaacttctcccttcaggccgccgtcgtcatcgtc
ttcaacctcgccatgatgctgctcgtcttcccggcggtgctcgccctggacctgcgaaga
cgtcggcaaaaccgcatggacttcctctgctgcctgcccagcccgtgcgccgatcgcgtg
ctcacggtgcagcccggcgagtaccgggaggagcacggcagcttgggctcccactcctcc
tcgtccacgaccaccaccgccagcggcggcagcagcggcggcaccgacgccgccagcgtc
gtggccccgcacgccgtcgccgccaccaccgcctccttcccggtgcacggccacgccacg
gccttcaccatgcgcgccaccgtgaccgcggtggcgcgctgcgacccgtcgggccagcac
gtcatcaccgtgctgccggcggccgccccgcgcgtgacggcgtacgccgtcccggtggag
gtggcggccgcgccgtcgccgtgctcgcgccactcctcgtgctcctcctccgccgccgcg
cccggcccggacgcctgcacctcgacgcgcgacctcatcgctcaggtggaggaggccgcg
ggggccgccggggccggggcgccggcgccgggcggggagtgcggcgactgctccccgcga
gcgaccgggtgcctggggaagtggacggcgtcggagtttgcgcgcgaccgctacgctccg
ctgctgctgaggacgcccgtcaaggtggtggccgtggtgtcgtcgctggcgctgctcgct
acgtgcctctacgggacgacgctggtgcgcgacggcctcgatctcatggacgtggtgccg
cggggcacgcgcgagcgcgccttcctggaggcgcaggcgcggcacttctcgctgtacgcg
gtgcacgtggtgaccacggccggcgtggactacccccgcgcgcaggcgcagctctacgcg
ctgcacgagcgcgtagggcgcgtgcggcacgccgtgcgacaccgcgacggcgccatcccc
aagatgtggctccactacttccgcgactggctgcttgacctgcagaaggcgtttgatgcg
gagtgggcgtcggggcgcatctcgcgcgagagctggcgcaacggctccgaggcggccgtg
ctcgccatgcacctcatggtgcagacgggcgaccgcgagcagccaatcaactacggccag
ctgccggcgaagcggctggtgggctccgacgggatgatcgacccggacacgttctacgag
tgcctgacggcgtgggccagcagcgaccccctgggctacgccgcatcgcaagcggccatc
cacccgcagctgcccgagtggatccacgacaagtacgactcggaccccgagggcatgcac
atccaggcggcggcgcccatcgagtacacccacttctccttcttcctgggcggcctgcgc
gagacgcccgacttcctgagcgtcatcgagacggtgcgcgccatcaccgaggagttcagc
gagcgcggggtgccctgctaccccagcgggctgcccttcctcttctgggagcagtacgtc
ggcctgcgccagtggctgctgctgtccgtggtgctggcgctagcggccgccttcctcgtc
accgccgcctgcctgctcagcccgtggacggccgccatcgtggtactcgtgctggcggcc
atgacggtggagctctttggcgtcatgggcttcctgggcgtgaggctgagcgccagcccc
gtggtgaccctcgtgctctccgtgggaatcggcgttgagttcaccgtgcacaccgcgctg
gccttcacgaacgcgacgggcggccgcgaccggcgcgtggcggcggcgctcgagaagacg
ctggtgcccgtcctccacggcgccgcctccaccttcctgggcgtcgtcatgctcgccgcc
tccgagttcgacttcatcgtccgatatttcttcggcgtgctcacaatcatgaccctgctc
ggcgttttcaacggactcgtgctgctgcccgtgttgctctccgtgctgggccctccctcc
caggccgcgcgcaagcggacgggcggagtacgagtggacgcgccgccgcccccgtctgcg
cggcccgcgtgccgctgcgcggcctacgcggcgagcctgcgctacctcgatggccccgag
gccccgcgcgccgggacggaggagacgggcgaggagctgcggccgtactgcgagcgcgcc
ggccacgcaggagcgccggcggccgccctgccgctcccgcacgtcatggtggaagcctcg
gacagcggctttgcgccccgcgtgagcctgatgcaagtcaaaatcccagacgctgacggc
gcccaggacatcctgcaggagccacaccggcacaacggcggcgcctccgctcaccagctg
cactcggcccgcagccgcgaagcacaggagaacctccgcaaccagagccaccaacagcag
cagtggcagcagcagcagcagtggcagcagcagcagcagcacatccacccgcaccagcac
cactaccgtcggcagcgccgcccgcggtcgggcgaccccgcggcccgcgagccgcgcagg
actcaaacgccggcgccgcccggctgctgcggggtcatccccacggtgacggctaccacc
tcggtgacggtcgccatcacggggggcatgccgggcgcgccgctgggggccgccgtggcc
gcggcagcggcggcggccgcggccggggaaggccgaagggcgccgggctgcaaagtgagg
acgaacccgtttgagggctacgcgcacgcggcgtacgacgacagcgacgagggctgcttc
ccagactcgccggaggcagcgcggcccggctcgccggggtcgcccggacttccgggaacg
ccggacgggcacgaggaccgcgactcgttacgcgtggaggacctggagtgcatcgcgccg
cgcgtgcacggccccgccggcgccttttga
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