Lethenteron reissneri (Far Eastern brook lamprey): 133352042
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Entry
133352042 CDS
T09663
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133352042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133352042
03041 Spliceosome [BR:
lrj03041
]
133352042
03009 Ribosome biogenesis [BR:
lrj03009
]
133352042
03016 Transfer RNA biogenesis [BR:
lrj03016
]
133352042
Enzymes [BR:
lrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133352042
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133352042
Spliceosome [BR:
lrj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133352042
Complex C
U4/U6.U5 tri-SnRNP related factors
133352042
Ribosome biogenesis [BR:
lrj03009
]
Eukaryotic type
Pre-60S particles
Helicases
133352042
Transfer RNA biogenesis [BR:
lrj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133352042
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
SH3_HelY
Motif
Other DBs
NCBI-GeneID:
133352042
NCBI-ProteinID:
XP_061423740
LinkDB
All DBs
Position
39:305594..328581
Genome browser
AA seq
1019 aa
AA seq
DB search
MGDAFVGDLFSVFDEEADEKPLGVPAPRQKKTPTKRPYGCEETGSAASEGGAAADGIDDL
ISRKRLKLERNITFEQNLTQLMPRVKTVRVETLEGCTHEVAIGQESAYETLKLRVGLPAK
EYPFLLDPFQREAILCIDNSQSVLVAAHTSAGKTVCAEYAIAQALRGKQRVIFTSPIKAL
SNQKYRELHEEFHDVGLLTGDITINPSASCLVMTTEILRSMLYRGSEIMREVAWVIFDEI
HYMRNPERGVVWEETIILLPDNVHYVFLSATIPNGTQFAEWICHLHKQPCHVVSTDYRPT
PLQHFIFPAGGDGLLLVVDEFRDFKEDNFLQAMSQLREGGDPSRKRKGGNKGESNVFKII
KLIMERNLQPVIIFSFSKRECETYAVQLSQLDFNTEEEKCLVEEVFNNAMSCLSDEDQKL
PQVQRVLPILKRGIGIHHGGLLPVLKETIEILFSEGLIKALFATETFAMGINMPARTVLF
TSARKFDGRDHRWISSGEYIQMSGRAGRRGMDERGTVILMVDEKMSPTVGHQLLQGSPDP
LNSAFHLTYNMVLNLLRVEEINPEYMLEKSFFQFQQYKAVPDLLAKLQALQGRYATLAVP
DEASATSYYHIEQQLQRLHAEARAITLRPQHCLHVLQPGRLVQVTHGKEHFGWGVVVNFQ
RKPTSQEEFTHVVEALLLCSEESVRNAATETPRPPQPKERGELQVVPVALELVEAISTVR
LYMPPDLRTPEARHHVLKTLQEVKARFPDGVPLMDPVHDLGIKDPELEAVLHKTRAFAQR
RLAHPLHTSSQRDAIRGICVSKAQVAEEMRAVRKEVRRAHMMLQMDELKRRKRVLRRLGY
CTQADVIQVKGRVACEITAGHELLLTELVFEGIFNELSPEQAAALLSCFVFQEKASETPK
LATDLAEPLRKMKECARRIGHVSVEAKLLGREDVLLDDIRPQLMDVVYSWALGESFFTIT
TMTDAFEGSIIRCFRRLEELLKEMGKAAHVIGNSELEEKFNKAVTAIKRDIVFAGSLYL
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgggggacgcgtttgtcggggacttgttcagcgtcttcgacgaggaggcggacgagaag
ccgctgggagtccccgcgcccaggcaaaagaagactccaaccaaacgcccatatggatgc
gaggagactgggtccgcagcctcggaagggggagccgcagccgatggaatcgacgacctc
atcagcagaaagcgtctcaagctggagcgaaatattacctttgaacagaacctcacccag
ctcatgcccagagtgaagaccgtgagggtagagacactggagggctgcacgcacgaggtg
gccatcggacaggagtctgcttacgagaccctcaagctcagagttggtttgccggcaaag
gagtatccattcctgctggacccgttccagcgggaggcaatcctatgcattgacaacagc
cagtcagtgctggtcgccgcacacacgtcggctggaaaaaccgtctgtgccgagtacgcg
atagcgcaagctctgcgtggaaagcagcgcgtgatattcacgagccccatcaaggcgctc
agcaaccagaagtaccgagagctacacgaggagttccacgatgtggggttgctcacggga
gacatcaccatcaaccccagtgcctcctgcctcgtcatgaccaccgaaatcctgagaagc
atgctctaccgaggctcagagataatgagggaggtggcctgggtgattttcgatgaaatt
cactacatgcggaacccagagcgtggcgtcgtgtgggaagagaccatcatccttctgcca
gacaacgtgcactacgtgttcctctctgccaccatccccaacggcacgcagttcgccgag
tggatctgccacttgcacaagcagccatgtcacgtagtgtccaccgactaccggccgacc
cctctacagcacttcatcttcccagctggcggcgacggcctcctcctggtggttgacgaa
tttcgtgacttcaaggaagacaacttcctgcaagcgatgtcccaactgcgggaaggaggc
gacccatcccgcaagcgcaagggcggcaataagggggagtccaatgtcttcaagatcatc
aaactgatcatggaacggaacctgcagcccgtcattatcttcagcttcagcaagcgcgag
tgcgagacctacgccgtacagctctcccaactcgacttcaacacggaggaagagaagtgc
ctggtggaggaggtgttcaacaacgccatgagctgcctttcagatgaggaccagaagctg
ccgcaggtgcaacgagtgctgcccattctaaagcgaggtattggcatccatcatggtggg
ctgctgcctgtcctgaaagaaaccattgaaatcctcttttctgagggcctcatcaaggct
ctctttgccacggagacatttgccatgggcatcaacatgccggcccgcaccgtgctcttc
accagcgcacgcaagtttgacggccgcgaccaccgctggatctcgtctggcgagtacatc
cagatgtcgggccgcgcgggccggcgcggcatggacgagcgcggcaccgtcatcctcatg
gtcgatgagaagatgagccccaccgtaggacatcagctcttacagggctcacccgacccg
ctcaacagcgccttccacctcacctacaacatggtgctgaacctgctgcgagtggaggag
atcaaccccgagtacatgctcgagaagtccttcttccagttccagcagtacaaggctgtg
cctgatctcctggccaagttgcaggcgctacagggccgttacgcaacgctggccgtgccg
gacgaggcaagcgccacctcctactaccacatcgagcagcagctgcagcgcctgcatgca
gaggcgcgcgccatcacactgcggccacagcattgcctgcacgtgctgcagcctggccgc
ctcgtacaggtcacacatgggaaagaacactttggctggggtgttgtcgtcaactttcag
cgcaaaccaacaagccaggaggagttcacccatgtggtggaggcgctgttgctgtgctcg
gaggaaagcgtgcggaacgcagcaacggagacgccacggcccccgcagcccaaggagcgt
ggggagctgcaggtggtgccggttgcgctggagctggtggaggcgatcagcacagtgcgg
ctctacatgccaccggaccttcgcacccccgaggctcggcaccatgtgctgaagaccttg
caggaggtgaaggctcgcttcccagacggggtgccactgatggaccccgtgcacgacctc
gggatcaaggaccccgagctggaggccgtgctgcacaagacgagggcctttgcgcagagg
aggctcgctcacccgctgcacacgagctcgcagcgcgacgccatccgcggcatctgtgtc
agcaaggcccaggtggcggaggagatgcgcgccgtcaggaaagaggtgcgccgtgcacac
atgatgctgcaaatggacgagttgaagcggcgcaagcgcgtgctgcgccggctcggatac
tgcacacaggccgacgtcatccaagtgaagggccgggtggcctgcgagattaccgccggg
cacgagctgctgctcacggagcttgtgtttgaggggatctttaacgagctgtcccccgag
caggccgccgcgctgctcagctgcttcgtcttccaagagaaggcctcggagacgccgaag
ctcgccacggatttggccgaacctctccgaaagatgaaggagtgtgcgcgccgtattgga
cacgtgtccgtggaggccaagctgctagggagggaggatgtcctcctggatgacatccgg
cctcagctcatggatgtcgtgtacagctgggccctcggagagtctttcttcaccatcacc
accatgaccgatgccttcgagggcagcatcatccgctgtttccgaaggctggaggagctc
ctgaaggagatgggcaaggcagcgcatgtcattgggaattccgaattggaagaaaagttt
aataaggctgtcactgccatcaagcgcgacatcgtgtttgcgggcagcctgtacctgtaa
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