Lethenteron reissneri (Far Eastern brook lamprey): 133352377
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Entry
133352377 CDS
T09663
Symbol
NPHP4
Name
(RefSeq) nephrocystin-4 isoform X1
KO
K16478
nephrocystin-4
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lrj03037
]
133352377 (NPHP4)
Cilium and associated proteins [BR:
lrj03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
133352377 (NPHP4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cep192_D3
Motif
Other DBs
NCBI-GeneID:
133352377
NCBI-ProteinID:
XP_061423957
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All DBs
Position
40:5703341..5980555
Genome browser
AA seq
1435 aa
AA seq
DB search
MDETLFTAFSAGASGRSFARLRLAQASDEDEEGTLATGATQGPWLRRFVRTNSQRRLVPP
PTSRSQLMFGGRCSVCRLAFGELQGIRLPHGMQQASPDLRYQLRLTFFDLVFRKFFGCTW
MSQPKAAATDGGSPGKSHSVSFNVPVYFNTSLCHPAIVLVLEVVCLSPQQRSDRANPNVS
CGWGILRIFTGEQDPRGSKTHASSAAKQPKRLTLYHGTPRALLIPEFADPIESNKLVLPI
AGAHLVYTLQPHEPLAKAQHLLPENCPLPGSAIVPGLASAPANSGDALLKPRLLKSSPCF
LDHITVTLPPSLERFEETLLSLLNQDRLNTDDRMPDGHTVTVQERRLHIGVHNGWTFVQD
PQVAVLVPEWDPGKGGAGSVHKRSASLTRTGIAGASGLTLRSQVRLPEMVNTPGFAIVFR
LEYVLSAPFNYADGKTTSSTALVRSSVFMRTVRWSAWDPSAQAADPSGGRSDPTFGRGRD
VTAALLGGPRDNPAHVLVYADSAEGGCGSIRFRFGWTEEEARQRGEQLQAQRASHGPPTV
TPHGHAESRHVVNPVSTPDHAGSVVRRTIVDTDEASPEQLHGRTVTPVDALILAPSGGLP
TSFSSTLSRAAFARLHTAASFLEIRDIHGRLADMVDPGDPVAFDLMREEADPLKGNEIVL
QFVAFSRASGGGGGRRDGSVTRAPTSVYFTLHFYRFPPVATRALALSEVPAHARSDEPTL
LLPLGPDGVPLKGSPGLHLRYLVDPGIMKAGELRYFYDYLAMHRLHIDVWDARSLLPIGT
CSVPLKHLLRCGRGAVQAWHHADVVTTDYEQLHPSGPQALSTAVVVVGQLHLRLGNIGRV
ADLKRRRRRTGVDAMPSAEKSASFTSGGALQRPNDLGFSHRVATVPRLADTYPELATMLL
SRAPSPLLLAEGTVVDPARARKLQRLEAVRRAEGGLASGASAFGVLSQREERARRLRDLR
VVEAYRERLRPESIANALVRALTTRHALHAAPGTAEFFEFPLRNPHSTPQTVDVQSTDPE
LRVIVDVEEWRHFKRLTRKTTPLEEGLFDVAGGDELSPQLFLRPRETVLVPFKYQSFEAE
RGGDAPQGPEDPSRPWVAAMTSQQQASARRGKEIKVFFRTPDDLPIAILQVDVEPQPPLV
NEMFRFCQPELTILKKTIRLPAWHSFSGRAEGRAEQQLHVRCSDANILCKTSNSGASEPC
DISVKVSGSPSPHVTTFFIMIYTDPYHAVPVQLWRMMVHWVQRVDVSCQLGQSARASLPL
RGTRALRRVQCHVAQPDAVVEVSPRDEFTLQPDSVHEVSLRVRPLSAGTRSHLLSAVDTE
SLAMLNCWLVCVSCSPPVISREFEFRLPADGVKGSSKRIKYTNPYLEARKLELQASRPDL
VVFKEDIFEVAARGEYSIGLRFVLGAARGTESILIFINNAEGDNEETLCVRVTYD
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggacgagacgttgttcacggcgttctcggcgggcgccagcggccgctcgttcgcccgc
ttgcgcctcgcgcaggcctccgatgaggatgaggagggcactttggcgacaggggccacg
caaggaccgtggctgaggaggtttgtacggacgaactcgcagaggaggctggtgcccccg
ccgacgtccaggagccagctcatgtttggcggcaggtgttcggtgtgtcgcctcgctttc
ggcgagctgcagggaattaggctaccgcatgggatgcagcaggcgtcgccggacctgcgg
taccagctgcgcctcaccttctttgacctggtgttccgtaaattctttgggtgcacgtgg
atgagccagccgaaggcagcggccaccgacggcggcagccccggcaagtcacactccgtg
tccttcaacgtgccggtgtacttcaacacatcgctgtgccacccggccattgtgctggtg
ttggaggtggtgtgcctgtcaccgcagcagaggagcgaccgcgccaatcccaacgtgtcg
tgcgggtggggcatcctgcggatcttcacgggcgaacaggacccccggggcagcaagaca
catgcctcctccgctgccaagcagccaaaacggttgactctgtaccatggaaccccacgg
gccctcttgataccggaatttgcagaccccattgaatccaacaagctggtgctgcccatc
gccggtgcccacttggtctacacgctgcagccgcacgagccgctcgcaaaggcacagcat
ctgctgcccgaaaactgccctctccccggctccgcgatagtccccggcctggcatcggct
ccggctaactccggtgatgccctgttgaagccaagacttttgaagtccagtccctgcttt
cttgaccacatcacggtgactctgcctccgtcgctggagcgatttgaagaaaccttgctg
agccttctcaatcaagaccgactcaacacggacgaccgcatgccggacggacacacggtc
accgtgcaggagcgaaggctgcacatcggggtccacaacggctggaccttcgtgcaggac
ccgcaggtggccgtgctggtgcccgagtgggacccgggcaagggcggcgcgggcagtgtc
cacaagcgctcggcatcgctaacccgcacaggaatcgcaggcgcgtccggcttgacactg
cgcagccaagtgaggctgccggagatggtgaacactccgggttttgccatcgtcttccgg
ctggagtacgtcctgtctgcgcccttcaactacgccgatggcaagacgacgtcctcgacc
gcgttggtgcgttcgtccgtcttcatgcgcaccgtgcgctggtcggcgtgggatccctcc
gcccaggccgcagaccccagcggggggcgttccgatcccacgtttggccgcgggcgcgac
gtcacggcggcgctgctcgggggaccgcgagacaacccggcgcacgtgctggtgtacgcg
gactcggcggagggaggctgcggctccatccgtttccgattcgggtggacggaggaggag
gctcgccagcggggcgagcagctgcaggcacagcgagcgagccacgggccgcccaccgtc
acgccgcacggtcacgcggagtcacggcacgtggtcaacccggtgtccactccagatcac
gcgggcagcgtcgtgagaaggaccatcgtggacacggacgaggcgtcgcccgagcagctc
cacggcagaaccgtgactccggtcgacgccctcatcctggcgcccagcggtggactcccc
accagcttctcgtcgacactgtcacgcgcggccttcgcacgcctccacactgctgccagc
ttcctggaaatccgcgacatccacggccgcctcgctgacatggtggaccccggcgacccc
gttgcctttgacctcatgcgggaggaggccgaccctctgaagggcaacgagatcgtgctg
cagttcgtggccttcagcagagcgtcaggaggcggtggcgggagacgggacggcagtgtc
acccgtgcgcccacgtccgtctacttcacgctgcacttctaccgcttcccgccggtcgcc
acgcgagctctggccctctcggaggtgcctgctcacgcccgatcggacgagcccaccctc
ctgctgcctctgggccccgacggggttccgctcaaaggctctccgggactgcatctcagg
tacttggtggatccgggcatcatgaaggccggggagctgcgctacttttacgactacctc
gccatgcacaggctgcacatcgacgtgtgggatgcccgatcgctgctgcccatcgggacc
tgctccgtccctctcaagcacctgctgcggtgcgggcgcggagcggtgcaggcgtggcac
cacgcggacgtcgtcacgacggactacgagcagctgcacccgagcggcccgcaggccctc
agcacagccgtcgtcgtcgtggggcagctacacctgcgcctgggaaacatcggccgcgtg
gcagatctgaagaggaggaggaggaggacgggggttgacgcgatgccgtccgcggagaag
agcgccagcttcacgagcggcggcgcccttcagaggcccaacgatctgggcttttcccac
cgtgtcgccacggtgccgcgtctcgccgacacctacccggagctggccaccatgctgctg
tcacgtgcgccgtcgcccctgctgctcgcggagggcaccgtcgtggacccggctcgcgcc
cgaaagctccagcgcctggaggccgtccgccgtgccgagggcggcctcgccagcggcgcc
agcgcgttcggagtcctgagccagcgggaggagcgcgcccggcgtctgcgcgacctgcgc
gtggtggaggcctaccgcgagcggctcaggcccgagagcattgccaacgcgctcgtgcgg
gcgctgaccacgcggcacgcgctgcacgccgcgcccggcaccgccgagttcttcgagttc
ccgctgcgcaacccccactccaccccccagacggtcgacgtgcagagcaccgaccctgag
ctcagggtgatcgtggacgtcgaggagtggcgccacttcaagcggctgacgcgcaagacc
acgccgctggaggaggggctgttcgacgtggccggcggcgacgagctgagcccgcagctc
ttcctgaggcctcgtgagacggtgctcgtgcccttcaagtaccagagcttcgaggcggag
cgtggcggcgacgcaccgcagggtcccgaggaccccagcagaccgtgggttgccgcgatg
acttcccagcagcaggcgtccgcacggcggggaaaggaaatcaaggtgttcttccgcaca
ccggacgaccttcccatcgccatcctgcaggtggacgtggagccccaacctcccctcgtc
aacgagatgttccgcttctgccagccggagctcaccatcctcaaaaagacgatccgcttg
cccgcgtggcacagcttctcaggtagagcagaaggccgagccgagcagcagctgcacgtg
agatgcagcgatgccaacatcttgtgtaagacgtcgaactcgggcgcgtcggagccgtgc
gacatatccgtgaaagtctcgggcagcccgtcgccgcacgtcaccacgtttttcatcatg
atctacacggacccgtaccacgcggtacccgtacaactgtggcgcatgatggtgcactgg
gtgcagcgtgtcgacgtctcctgccagctcgggcagtcggcgcgcgcgtctttgcctctg
cgggggactcgcgccctgcgccgggtccagtgccacgtggcccagcccgacgccgtcgtt
gaggtatctccgcgggacgagttcacgctgcagcccgactcggtgcacgaggtctctctc
cgcgtgcgcccgctctccgccggtacccggagccacctgctgagcgccgtcgacacggag
tcgctcgccatgctcaactgctggctcgtgtgcgtctcctgctcgccgcccgtcatctcc
agggagtttgagttccgcttgccggcagacggtgtcaagggatccagcaagcgcatcaag
tacaccaatccctacttggaggcccgcaagctagagctgcaggccagccggcccgacctc
gtggtcttcaaggaggacatcttcgaggttgccgcgcgaggggagtacagcatcggcctg
cgctttgtgctgggcgcggcgcggggaacggagtccatcctcatcttcatcaacaacgcg
gagggggacaacgaggagacgctgtgcgtgcgagtcacctacgactga
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