KEGG   Lethenteron reissneri (Far Eastern brook lamprey): 133352675
Entry
133352675         CDS       T09663                                 
Name
(RefSeq) LOW QUALITY PROTEIN: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lrj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    133352675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lrj03021]
    133352675
   03036 Chromosome and associated proteins [BR:lrj03036]
    133352675
Transcription machinery [BR:lrj03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     133352675
   Coactivators
    SAGA/TFTC/STAGA complex
     133352675
Chromosome and associated proteins [BR:lrj03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     133352675
    STAGA complex
     133352675
    TFTC complex
     133352675
    SAGA complex
     133352675
    SLIK complex
     133352675
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML_2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR19_1st TFIID_NTD2 Ge1_WD40 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 PEP5_VPS11_N Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 133352675
NCBI-ProteinID: XP_061424454
LinkDB
Position
41:complement(9976301..9993718)
AA seq 791 aa
MKRVRSEQLQSAVNQLLKRRHYTESELAQRQSFRGCQSAEEMAASMAAQLESGPMNAVSF
GVYEPNPSHYDRQFNALRQFVNELRGEERVELQTLMSALSLALCVELALGGWRSAAEAFH
GRHVGPVAHTHEQRLLAERLGAALSRQDVGSDTCVRTLTEHKLCVELGVVAHGRLMRHLL
QGEHGLLLRAVSTHLRLDVRAQARSSAAGLELYSDGTGGSGGGGASARAGESAAAAGGLT
ADGDPEMNALPPDEVSLELLQDSIRRVREGPLNAATVCLYGFKDDSTPPGTTTTTTPAGS
ASGSGAGGTSGVAAAATSTTASSLGVGGNSSNSGVGGGAGGPVIANATSPQPGSSASSAA
AAATASTTTTAGSATASATAPPPPSTSSSSSSSFSSSSSSSFVSATAGTAGGGGGGCGGS
GCGGAGMVGGGSGGPSVPAPPCAAEVAPGMGMLAAGYEDSRVMLWSLGPRKLRTARHNVD
VARVNLACDILDDKVVEDSKGSDVKTLRAHSGPVYAVRFLPGGAGLLSCSEDTSVRFWDP
RTFTNTAVYQGHAYPVWDVDVSALGLYFCSGSHDRTARLWVPERAFPLRVYAGHVSDVNV
VRFHPNGSYVATGSADRTVRLWSTQQGSAARLFTGHRGTVLALAFSPGGRLLASGGEDQR
VRLWDIGSGAIVKELRGHSDDITCLSFSPDGSALASGSSDGSVRVWDVRGASTNPGGGGG
SGTGGGGTGGGGGTGAAGGGGGAAFAADVDATEITGAAPSTRICTALNVQFMASNLLLVS
AVTRDEPAGGT
NT seq 2376 nt   +upstreamnt  +downstreamnt
atgaagcgcgtacgcagcgagcagctccagtcggccgtcaaccaactcctcaagcggcgc
cactacaccgagtcggagctggctcagcggcagagcttccgcggctgtcagtcggccgag
gagatggcggccagcatggcagcccagctagagagtgggcctatgaacgcagtgtcattt
ggtgtctatgagcccaacccctcgcactatgatcgccagttcaacgcactacgccaattt
gtcaatgagctgcgcggggaggagcgcgtggagctgcagacgttgatgagcgccctctcg
ctggcgctgtgcgtggagctcgcgctcggcggatggcgctctgccgccgaggcgttccac
gggcgccacgtggggcccgtcgcccacactcacgagcagcggctcctggccgagcggctg
ggtgcagcgctctcgcggcaggacgtgggctcggacacgtgcgtgcgcacgctcacggag
cacaagctgtgcgtggagctgggcgtggtggcgcacggccgcctgatgcgccacctgttg
cagggcgagcacggcctgctgctgcgcgccgtcagcacgcacctgcggctcgacgtgcgg
gcccaggcgcgcagctccgcggcggggctcgagctttatagcgacggcaccggcggcagt
ggggggggcggtgcgagtgccagggccggagaatcggcagcagctgcaggggggctaacg
gctgacggtgacccagagatgaacgccctcccgccggacgaggtctcgctggagctgctg
caggacagcatccggcgcgtgcgcgaggggccgctcaacgccgccaccgtctgcctctac
ggcttcaaggacgactcaacgccacccggaaccaccaccaccaccactcccgccggctcc
gcctctgggtctggcgccggcgggaccagtggcgttgccgcggccgccacctctaccacc
gcctccagcctcggcgtcggtggcaacagcagtaacagcggcgtcggcggcggtgcaggt
ggccccgtgatcgccaacgccacttcgccacaaccgggatcgtcggcttcctcggccgcc
gctgccgccactgcttccaccaccacaactgccggctccgctactgcttctgccaccgcc
ccgccacctccttccacttcctcctcttcctcctcgtcattctcgtcgtcctcctcctcg
tcgtttgtcagtgctaccgcgggaaccgccggtggtggcggcggtggttgtggcggtagc
ggttgtggtggtgctggaatggtgggcggcggcagcggcggaccgtccgtgccggcgccc
ccgtgcgcggccgaggtggcgccggggatggggatgctggcggccggctacgaggactcg
cgggtgatgttgtggagcctggggccacgcaagctgcgcactgcacggcacaacgtggac
gtggcgcgcgtcaacctcgcgtgcgacatcctggacgacaaggtggttgaggacagcaaa
ggcagcgacgtgaagacgctgcgcgcccactcaggtcccgtctacgccgtgcgcttcctg
cccggcggtgcggggctgctctcgtgctccgaggacacgagcgtgcgcttctgggaccca
cgcacattcaccaacaccgccgtctaccaaggacatgcgtaccctgtgtgggacgtggac
gtgagcgccctgggcctgtacttctgcagcggctcgcacgaccgcacggcccgcctctgg
gtgcccgagcgcgccttcccactgcgcgtctacgcaggccacgtgtcggacgtgaacgtc
gtgcgcttccaccccaacggcagctacgttgcgacgggctccgccgaccgcacggtgcgc
ctgtggagcacccagcagggctcggcggcacgcctcttcacgggccaccggggcaccgtg
ctggcactcgctttctcccccggagggcgcctgctcgcgtccggcggggaggaccagcgc
gtccggctctgggacatcggcagcggcgccatcgtcaaggagctacgcggacactcggac
gacatcacctgcctgagcttcagccccgacggcagcgcgctggcatccggctcttccgac
ggctcggtgcgcgtgtgggatgtgcgtggagcctccacgaatcctggtggtggcggcggc
agcggaactggcggcggtggaactggcggcggtggcggaactggggcggccgggggcggc
ggcggcgctgcgttcgcggccgacgtcgatgcgaccgagatcacgggcgcggcgccatcg
acgcggatttgcacggcgctcaacgtgcagttcatggcctccaacctgctgctggtgagc
gccgtcacgagggacgagcccgccggtggcacgtga

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