Lethenteron reissneri (Far Eastern brook lamprey): 133352843
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Entry
133352843 CDS
T09663
Name
(RefSeq) collagen alpha-1(XXII) chain-like isoform X1
KO
K16630
collagen type XXII alpha
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
133352843
NCBI-ProteinID:
XP_061424780
LinkDB
All DBs
Position
42:7994601..8153244
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AA seq
1477 aa
AA seq
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MSIAVHSAVRRETSRGMPGHTRRPARRGPSAVALLLGAALLCTSLGATAGETCPTVTGLR
SHGEGNLQQTKVSGFELTALFLRADNGSPRSGRAQGSIRVGTRPITFLTREVFPQGLPRE
FSFTMLFRLRTTSRKEDWYLWRMTDAHGATQLAVRLSGARLALDLVVRGAPVGTRASFRG
PAVSALFDRRWHALALSLGGGRAELRVDCAVAGARPLPDRRPSAGLDDPGGRTDLAKRVR
DGGPVDFDLLRMLIYCDPRQVEEDSCCDLPGAQCAPRLEATLPPPTSRLPPAGRFSPLVS
TLTPSPNCSCSPGPSGPEGDRGLPGRAGNAGFKGKSGFQGWMGAAGPKGEQGDMAVDWEG
GGKKGDKGDPGQTGQPGLKGDKGEKGIMGSPGMIGLSGQKGDQGETGMKGESGHPGARGQ
EGLRGAPGEAGPPGPVGPAGLAGIPGERGPLGDQGAKGDAGLPGFAGDAGKPGIPGMPGN
PGKDGSKGDKGDMGLPGPPGPPVVTAQISGADGDPGPKGPIGRPGLAGPPGDTGPPGPRG
EIGPLGTAGRRGRRGQRGATGKEGPPGKRGPPGQPGPPGQPGPPGAIGSQMELGDQGLPG
DLGYVGRRGVVGSPGSPGKDGKDGLPGYPGQKGDTGSPGSQGNPGIPGLKGDPGEIGRQG
PTGQKGDPGDGGPLGPVGAKGDKGEEGETGNPGSAGFKGEKGDRGDTGPRGPPGLPAAGS
QATGVITTEPGPQGEPGQKGSKGDVGDLGPRGPQGRTGNPGPLGPDGQKGEKGEIGPTGN
TGRDGPPGLLGSQGATGLPGVPGLPGPMGMQAKPGAKGERGIPGVEGATGPLGPRGLPGP
PGLQGPLGLGLPGKLGERGQAGPAGPQGPKGERGFLGNPGPPGEKGQPGIGVPGPQGPQG
TAGERGPQGPKGAPGFPGLQGIPGKDGVPGKDGRPGIEGPPGKPAPLPLISQGEMGNLLK
NVCSSCLTGAQGSPGLPGLKGDKGYTGSPGEDGRDGEKGDAGSQGSAGAPGVDGMKGSKG
ERGLTGPAGDKGERGLPGLPGYFPEPSVIGSQGMLGEVGSPGLIGPPGIKGEPGEAGLPG
SMGLPGPPGLSGVDGRNGRDGQSGEKGMKGEPGLVAFDGVEGPMGFKGFTGEPGPPGPKG
EEGPSGLPGRDGIQGIDGSPGLPGPQGPPGPIGEPGRLGPPGHHGLRGLPGEAGAKGDQG
SVGDVGFSGSRGPPGPMGPVGRAGEPGREGQPGGKGDRGQKGERGEPGIQGDQGLQGDKG
RSGEPGPPGVKGITGPMGPYGIPGERGSPGLPGLMGPIGPHGPKGDAFPLDEMKRLIREE
VTRILEDRLTRVMAHIQSPAAIVTSPGRPGPPGPPGRDGTPGRPGMLGEPGPQGLMGSQG
SPGIQGPQGDRGPKGQRGDPGIAIKGERGVPGQPGTPGSPGQAKDGSPGPAGPPGRFGIA
GMPGPQGPPGRAGRCDPATCQQAALLAYRDRRDADRP
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcgcagtgcacagtgcggtgcgccgagagacgtcgcgagggatgccgggacac
acgcgccgccccgcgcgccggggaccctccgccgtcgccctgctgctcggagccgccctg
ctgtgcacgagtctcggcgcgacagcaggtgaaacgtgccccactgtgacggggctgaga
agccacggggaaggaaatctccagcagacgaaagtctcagggttcgaactcacggcactc
ttcttgagagcggacaacggctcaccaaggtcaggacgggcacaaggctccattcgagtt
ggcacgaggcccatcacgttcctcaccagggaggtgttcccccaaggccttccgcgagaa
ttctccttcaccatgctcttccgcctgcgtaccacgtctcgcaaggaggactggtacctg
tggaggatgacggacgcccatggtgccacgcagctggcggtgcgtctgagtggcgcgcgc
ctcgccctggacctggtggtgcgcggggcccccgtgggcacgcgggcctcgttccgcggg
cccgccgtgtcggcgctcttcgaccgccgctggcacgcgctggccctctcgctcggcggg
ggtcgcgccgagctgcgcgtcgactgcgcggtggccggggccaggccgctgcccgatagg
cggccctcggccggcctcgacgaccccgggggacgcaccgatctggccaagcgcgtccgc
gacggaggccccgtcgacttcgacctgctgcggatgctcatctactgtgacccccgccaa
gtggaggaggacagctgctgcgacctccctggcgcccagtgcgcgccgcggctcgaggcc
acgttgcctccgcccacgagtcgcctgccgccagccgggcggttctctccgctcgtgtcc
acgctcaccccgtcgcccaactgctcgtgctcgccggggccgtccggcccagagggtgat
cgagggctgcctgggcgagcggggaatgcaggcttcaaggggaaatctggattccaaggc
tggatgggagctgctggaccaaaaggagaacaaggggacatggccgttgactgggaaggt
gggggtaagaaaggagacaagggtgatccggggcagacaggtcagcctggcctcaaggga
gacaagggtgagaagggtattatgggctcacctggaatgatcggtctgtctggacaaaaa
ggtgaccagggcgaaactggaatgaagggtgaatccggacatcctggagccaggggtcag
gagggtctgcgaggagcaccgggggaagccgggccgcctggtcctgtcggacccgcgggc
ttagcgggcattccgggcgagaggggccccctcggagaccagggtgcgaagggagacgct
ggccttcccggattcgctggagacgcggggaaacctggaatcccaggcatgccaggtaac
cctggcaaggacggctctaaaggagacaagggagacatgggacttccaggcccacctgga
cctccggtcgtcaccgcccagatatccggagcggacggcgatcccggacccaagggccca
atcggaagacctgggctggcaggacctcctggcgatacgggccctccaggaccccgtggc
gaaatcggaccccttgggaccgcggggaggaggggtcgtcggggccagaggggagctacg
gggaaggagggacctccggggaaacgcgggccacctggtcagcccggacctcctggtcag
cccgggcctcctggagccatcggcagccagatggagttgggtgaccagggcctgcctggc
gaccttggctatgtgggtcgacgaggagttgtgggatcaccgggttccccgggaaaagat
ggcaaggatgggctgccaggctaccctggacaaaagggagacactggatcaccgggttcc
caagggaatcctggcatccccggcctcaagggtgatcctggggagattggcagacaaggc
cctaccggacaaaagggagaccctggcgatggtggtccactgggtcccgtgggggcaaag
ggggacaaaggagaggagggtgagacagggaacccgggctctgctggattcaaaggtgaa
aaaggagacaggggcgacactggcccgcggggtccacctggcctccccgctgctggttct
caagcgacgggtgtgataacgacggagccgggacctcagggagagccaggccaaaaggga
agcaaaggggacgtgggagacctgggccctcggggtccgcaaggaagaacaggaaatccg
ggccctcttggacccgacgggcagaagggagagaaaggggagatcggtcccactgggaat
actggtagagacggaccacctgggcttctgggatcccaaggagcaacaggactgcctggt
gtgcctggtctgcccgggccaatgggaatgcaggcaaaacctggggcaaaaggcgaaagg
ggcattcctggtgtcgagggagccacgggccctcttggacctcgtggtctgccaggccct
cccggcctacagggccccctaggcctcggtctccctggcaaactgggggagagaggccaa
gcaggtccagcaggcccgcaaggccccaagggtgagcgagggtttcttggaaacccgggt
cccccaggggagaaaggtcagcctggtataggtgttccaggtcctcagggacctcagggg
accgctggcgagagagggcctcagggtccaaaaggagctcctggatttccaggccttcaa
ggaatccctggaaaagatggagtccctgggaaggatggacgaccaggaatcgagggcccc
cctggcaagccggcgcccctgcctttgatctcgcaaggggagatgggaaacctgctcaag
aacgtgtgcagcagttgcctgacaggagcccagggctccccaggtctcccagggctcaaa
ggagacaagggctacacggggagtcctggggaggacggacgagacggggagaagggagat
gctggttctcaaggttctgccggagcccccggagtggatggcatgaagggcagcaaagga
gagagggggttgacaggccctgcgggtgacaaaggggaaaggggtctcccagggttacct
gggtactttcctgagcccagcgtcatcggttctcaaggaatgcttggagaagtcggctcc
ccaggattaataggaccacccggcataaagggagaaccaggagaggctgggcttcctggt
tctatgggcctgccaggaccacctggcctgtctggggtggatggaagaaacggcagagat
ggacaatctggtgaaaagggcatgaagggggagccgggtctggtggcattcgatggagta
gaggggcccatgggttttaaaggatttactggagaaccaggtccacctgggccaaagggt
gaagagggcccgtctgggctccctgggagggatggcattcaagggattgacgggagccca
ggtctccctgggccacagggacccccggggcccatcggagaaccgggtcgcctgggacct
ccagggcatcacggcctccgaggacttccaggagaagctggcgcgaagggagaccagggc
tccgtgggagacgttggattctcaggatcaagaggacccccggggcctatgggacctgtg
gggagagctggggagccgggtagagagggccagcctggggggaagggagaccgtgggcag
aagggagaacgcggggagcccgggattcagggcgaccagggcctacagggagacaagggc
cgatctggcgagccggggcccccaggggtgaagggcatcaccggaccgatggggccgtac
ggcatccccggcgagaggggctcacccggcctgccggggctgatggggcccatcgggccg
catggacccaagggcgacgcttttccccttgacgagatgaagcgtctgataagagaagag
gtcactaggatattagaagatcgactcacgagggtgatggcacacatccagtcgcctgca
gccatcgtcacatccccggggagaccagggcctcctggcccaccaggaagggatggcacg
cccggtcgacctggcatgctcggggaaccaggtccacagggattaatggggtcccagggc
tctcccggcatacagggtcctcaaggcgataggggccccaagggtcagcgaggggaccct
ggaatcgcgatcaaaggggaacgcggagttccaggacaaccaggcacaccgggcagcccc
gggcaggccaaggatggcagcccaggccccgcagggcctccaggcaggttcggcatagcg
gggatgccagggccgcaggggcctccaggccgggccggccgctgtgacccggcgacgtgc
cagcaagcggccctgcttgcgtaccgcgaccggcgagacgcggataggccctga
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