Lethenteron reissneri (Far Eastern brook lamprey): 133353296
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Entry
133353296 CDS
T09663
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133353296 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrj03021
]
133353296 (CPSF3)
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133353296 (CPSF3)
Transcription machinery [BR:
lrj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133353296 (CPSF3)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133353296 (CPSF3)
U7-dependent histone pre-mRNA processing factors
133353296 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Gp58
Motif
Other DBs
NCBI-GeneID:
133353296
NCBI-ProteinID:
XP_061425400
LinkDB
All DBs
Position
43:complement(147927..157857)
Genome browser
AA seq
693 aa
AA seq
DB search
MATKKADAAVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLDGMDALP
YIDIIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDFVKVS
NISADDMLYTEQDLEDSMDKIETINFHEVKEVAGVKFWCYNAGHVLGAAMFMIEIAGVKV
LYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVQDIVNRGG
RCLIPVFALGRAQELLLILDEYWGNHPELHDIPIYYASSLAKKCMAVYQTYVHAMNDKIR
KQISISNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVII
AGYCVEGTLAKHIMSEPEEIMTMSGLKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHV
VLVHGEQNEMGRLKAAIIREYEDNKEVSMEVHNPRNTEAVALHFRGEKLAKVMGMLAVRK
AEQGQRISGILVKRNFNYHILAPNDLSNYTELTMSHVTQCQAVPYTGPLTLLAHHLQTLA
GDVEEVEVGDKPALRVFRAVTIIQEPGMVVLEWVANPVSDMYADAVVTVVLEVQSNPKLC
KVPHHGPPEKTHSAVFLQRVLTMLSDMFGEDSVSLSQAGDALSVSVDGRTVNVSLDTCRA
ECAEGNEEEDEVLREMLQSCVTRLFRSLAPVIV
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaagaaggcggacgcggccgtgccggcggaggagagcgaccagctgctcatc
cgtcccctaggcgcggggcaggaggtcgggaggtcctgtatcatcctcgagttcaaggga
aggaaaatcatgctggactgtgggatccacccgggactggacggaatggacgcactgccc
tacattgacatcatcgaccccgccgagatcgacctcctgctcatcagccactttcacctg
gatcactgtggggccctgccgtggttcctgcagaagaccagctttaagggcaggactttc
atgacccacgccaccaaggctatctaccgctggctgctgtccgacttcgtcaaagtcagt
aacatctcggccgacgacatgctgtacacagagcaggacctggaggacagcatggacaag
atcgagaccatcaacttccatgaggtgaaggaggtggccggcgtcaagttctggtgctac
aacgcggggcacgtgttgggcgccgccatgttcatgatcgagatcgcgggagtgaaggtg
ctgtacacaggtgacttctcgcgtcaggaagaccgacatctcatggccgccgagatcccc
agtgtcaaacccgacatcctcatcatcgagtcaacgtacgggactcacatccatgagaag
cgcgaggagcgcgaggcgcgcttctgtaacacagtgcaggacatcgtgaatcgtgggggg
cgctgcctcatccccgtcttcgcgctaggacgggcgcaggagttgctgctcatcctggac
gaatattgggggaaccacccggagctgcacgacatccccatctactatgcctcctccctt
gccaagaagtgcatggccgtgtaccagacgtatgtgcacgccatgaacgataagatccgc
aagcagatcagcatcagcaacccgttcgtcttcaagcacatcagcaacctcaagagcatg
gatcactttgatgacatcgggcccagcgttgtgatggcctccccggggatgatgcagagc
gggctttcacgcgagctctttgagagttggtgcacggataaacgtaacggtgtcatcatc
gccggctactgcgtggagggcacgctcgccaagcacatcatgtcggaacctgaggagatc
atgaccatgtccggcctcaagctgccactcaagatgtcggtggactacatctcgttctcg
gcgcacacagactaccagcagacgagcgagttcatccgcgcactcaaacccccacacgtg
gtgttggtgcacggggagcagaacgagatggggcggctcaaggcggccatcatccgtgag
tacgaggacaacaaggaggtgtcgatggaggttcacaacccacgcaacaccgaagccgtc
gcgctgcacttccgcggagagaagcttgccaaggtgatgggaatgctggcggtgagaaag
gccgagcaggggcagaggatttcagggattctggtgaagaggaacttcaactaccacatc
ctggcccccaacgacctgtccaattacacggagctgacgatgagccatgtgacccagtgc
caggcggtgccgtacacggggcctctcacactgctggcccatcacctccagacgcttgct
ggcgacgtggaggaggtggaggttggagacaagccagcgctgcgtgtgttccgtgccgtc
accatcatccaggagcctggcatggtggtcctggagtgggtcgccaaccccgtgagtgat
atgtacgccgacgctgtcgtcacggtagtactggaagttcaatccaaccctaagctctgc
aaagttccgcaccatggaccacctgagaagacgcacagcgccgtgttcctgcagagggtc
ctcaccatgcttagcgacatgttcggagaggactcggtgtcgctgtcgcaggctggggat
gccctctcggtgagcgtggacggacgcacggtcaacgtctccctggacacgtgtcgtgcc
gagtgtgccgaggggaacgaggaggaggatgaggttctgcgagagatgctgcagagctgc
gtcactcgcctcttccgctcgctcgcgcctgtcattgtgtga
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