KEGG   Lethenteron reissneri (Far Eastern brook lamprey): 133353307
Entry
133353307         CDS       T09663                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133353307 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lrj03041]
    133353307 (SNRNP40)
Spliceosome [BR:lrj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    133353307 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    133353307 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IFT122_1st NBCH_WD40 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_RIG_2nd WD40_RFWD3 eIF2A Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_NWD2_C Beta-prop_IP5PC_F PEP5_VPS11_N WD40_like Nbas_N MIOS_WD40
Other DBs
NCBI-GeneID: 133353307
NCBI-ProteinID: XP_061425426
LinkDB
Position
43:1372771..1383944
AA seq 349 aa
MIEQKRKAQDMALVSVAKRARGDAAKGPAPGQGQQLLAVGPPRSSSLLAPIMLLTGHEGE
VYCCKFHPNGNTLASAGFDRTILMWNVYGDCDNYAHLKGHTGAILDIHYSTDGSTIFTSS
TDKTVGLWDSETGERIKRLKGHTSFVNACFPARRGPQMVCTASDDGTVKLWDTRKKGSVH
SFQNTYQCLSVTFNDTSDQILSGGIDNVIKVWDLRQNKLIYTMKGHNDSVTGLSLSPDGS
YLLSNAMDNSVRIWDIRPFAPMERCVKIFQGNVHNFEKNLLKCSWSHDGSKVSAGSADRF
VYIWDTTSRRILYKLPGHAGSVNDVAFHPEEPIVLSCANDKRLYLGEIQ
NT seq 1050 nt   +upstreamnt  +downstreamnt
atgatcgaacagaagcgcaaggcgcaggacatggcgctcgtgtcggtggcgaagcgcgcg
cggggagacgcggcgaaggggccagccccggggcaggggcagcagctgctggccgtgggc
cctcccaggtcctcgagtctgctggcgccaatcatgctgctcaccgggcacgagggcgag
gtctactgctgcaaattccaccccaatgggaacaccctcgcctctgccggcttcgacagg
accattctcatgtggaacgtgtatggagactgtgacaactacgcccaccttaagggacac
actggagcgatcctggatatacactacagcacggacggcagcaccatcttcacgtcgtcg
acggacaagacggtcgggctgtgggacagcgagacgggcgagcgcatcaagaggctcaag
ggccacacttcgtttgtgaacgcgtgcttcccggcgcgccgtgggccccagatggtctgc
acagccagcgacgacggcacagtaaagctgtgggatacacggaagaaggggtcagttcac
tcgttccagaacacgtaccagtgcctctctgtcacgttcaacgacaccagcgaccaaatc
ctctccggcggcattgacaatgtcatcaaggtgtgggacctgcgtcaaaacaagctgatc
tacacgatgaaggggcacaacgactccgtgactggactgagcttgagccctgacggctcc
tacctcctctccaatgccatggacaactcggtgaggatttgggacatacgaccctttgcc
cccatggagcggtgcgtgaagatttttcaaggcaacgtgcacaactttgagaagaacctg
ctgaagtgttcttggtcccacgatggcagtaaagtgtctgcgggttctgcagacaggttc
gtgtacatttgggacacgacgtcacgccgcatcctctacaagctgcccggacacgccggt
tctgtcaacgacgtcgctttccaccccgaggagcccatcgttctgtcgtgcgccaatgac
aagcgtctctaccttggagaaatccagtga

DBGET integrated database retrieval system