Lethenteron reissneri (Far Eastern brook lamprey): 133353398
Help
Entry
133353398 CDS
T09663
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03015
mRNA surveillance pathway
lrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133353398
09123 Folding, sorting and degradation
03018 RNA degradation
133353398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133353398
03041 Spliceosome [BR:
lrj03041
]
133353398
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133353398
mRNA cycle factors
Stress granule specific factors
133353398
Spliceosome [BR:
lrj03041
]
Complex C
Other components
Complex C specific factors
133353398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
133353398
NCBI-ProteinID:
XP_061425623
LinkDB
All DBs
Position
43:complement(3979573..4003892)
Genome browser
AA seq
639 aa
AA seq
DB search
MNPSGPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADDMCCLLPAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNK
AMYDTFSAFGNILSCKVVCDENGSRGYGFVHFETQEAADRAIEKMNGMLLNDRKVFVGRF
KSRKEREQEMGARAKEFTNVYIKNFGDDMDEDKLREFFGKFGKALSVCVMSDECGKSRGF
GFVSFERHEDAQRAVNEMNGKELNGRTVFVGRAQKKGERQAELKRKFEMLKQERISRYQG
VNLYVKNLDDNIDDEQLRKEFAPYGTITSTKVMSEEGRSKGFGFVCFSSPEEATKAVTEM
NGRIVGSKPLYVALAQRKEERKAHLTSQYMQRIAGMRALPPNTVISQYQPAAPSGYFVPA
MPQAQTRTAYYAPNQMTQIRPQQRWPTQQVRPQGGYQGMQGGMMRQSGTRQQQQQQQPPI
RTMSPITNTQIVRSIPGGHRVAATQTLGPRAMPGMGPRNVGAYKYGQPMRNPIHGHMQQM
HQAVHVHGQEPLTPSMLASAPLQEQKQMLGERLFPLIQGMHLSLAGKITGMLLEIDNSEL
LHMLESPESLRSKVEEAVAVLQAHQAKEVAQKTGAVPVQ
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgagcggaccaagttatccgatggcgtcgctgtacgtgggcgacctgcacccc
gacgtgactgaggcgatgctctatgagaagttttctcctgccgggcccgtcctatccatc
agggtctgtcgggacatgataacccgccgttcgctcggctatgcctacgtgaacttccag
cagcccgcagacgacatgtgttgtcttctcccagccgagcgggcactggacacaatgaac
tttgacgtcatcaagggaaagccaatccgcatcatgtggtcccagcgtgacccgtccctc
cgcaagtcgggcgtcggcaatgtgttcatcaagaatctcgacaaatccatcgacaacaag
gccatgtatgacaccttctccgcctttgggaacatcctgtcctgcaaggtcgtgtgtgac
gagaacggttcccggggctacggcttcgttcactttgagacgcaggaggcggccgaccgt
gccatcgagaagatgaacggcatgctgctcaacgaccgcaaagtgttcgtcgggcgcttc
aagtcacgcaaggagcgcgagcaggagatgggcgcgagggccaaggagttcaccaacgtc
tacatcaagaactttggcgacgacatggacgaggacaagctccgagagttctttggcaag
ttcgggaaggctctgagcgtttgcgtgatgtccgacgagtgcggaaaatcccgcggattt
ggctttgtgagcttcgagcgacacgaagacgcgcagcgggcggtgaatgagatgaacggt
aaagagctgaacgggagaaccgtcttcgtgggacgggcgcagaaaaagggcgaacgccag
gctgagctgaagcgcaaatttgagatgctgaagcaggagaggattagcagataccagggc
gtcaacctgtacgtgaagaacttggacgacaacatcgacgatgaacaactgcgcaaggag
tttgctccctacggcaccatcacgagcaccaaggtgatgtcggaggagggtcgcagcaag
ggcttcggcttcgtgtgcttctcctcgccagaggaggccaccaaggccgtgacggagatg
aacggccgcatcgtaggctccaagccgctgtacgtggcgctggcgcagcgcaaggaggag
cgcaaggcccacttgacgtcgcagtacatgcagaggatcgccggcatgcgcgcactgccc
cccaacaccgtcatcagccagtaccagccggctgctcccagcggctacttcgtgccggcc
atgccccaggcgcagactcgcacggcgtactacgcgcccaaccagatgacgcagattcgg
ccccagcagcgctggcccacacagcaggtccgtccgcagggtggctaccagggcatgcag
ggaggcatgatgaggcagtcgggcacaaggcagcagcagcaacagcagcagccccccatc
cggacgatgtcgcccatcaccaacacgcagattgtacgatccatccccggtggacatcgc
gtcgctgcgacgcagacgctgggaccccgagcgatgcctggcatgggaccgcggaatgtg
ggtgcctacaagtacggccagccgatgcgcaacccgattcatggccatatgcagcagatg
caccaggccgtccacgtgcatgggcaggagccgctgactccatcgatgctggcgtctgcc
cctctccaggagcagaagcagatgttgggcgagcgtctcttcccgctgatacaaggcatg
catctgtcgctggcggggaagatcaccggcatgctgctggaaatcgacaactcggagctg
ctccacatgctcgagtcgcccgagtccctgcgctccaaggtggaggaggctgtggcggtg
ctgcaagcccaccaggctaaagaggtggctcagaagacgggggccgtgccggtgcagtaa
DBGET
integrated database retrieval system
