KEGG   Lethenteron reissneri (Far Eastern brook lamprey): 133354708
Entry
133354708         CDS       T09663                                 
Name
(RefSeq) LOW QUALITY PROTEIN: roquin-1-like
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:lrj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lrj03000]
    133354708
   04121 Ubiquitin system [BR:lrj04121]
    133354708
Transcription factors [BR:lrj03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    133354708
Ubiquitin system [BR:lrj04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133354708
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-CCCH zf-RING_5 zf-RING_UBOX zf-CCCH_4 zf-RING_2 zf-C3HC4_4 zf-C3HC4 zf_CCCH_4 Prok-RING_4 zf-C3HC4_2
Other DBs
NCBI-GeneID: 133354708
NCBI-ProteinID: XP_061427745
LinkDB
Position
48:4682114..4727265
AA seq 1268 aa
MPVQAPQWTEFLSCPICCHEFDETLRRPVSLGCGHTACKTCLNKLHRKACPFDQTAIHTD
IEALPVNFALLQLLGAQVPDSQAPGVAVPSVAENGAHYDASKKCVEELALLLKPLSGAKG
VVAASQSQLSRPMQRKLVTLVNCQLVEEEGRLRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLETRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDLAHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNQLRPHLELL
ANIDPSPDAAAPTWEQLAAAMVAVKTVVQGLVDFIQNYSKKGFEQTQPLQNSKYKTSMCR
DLTQQGGCPRGASCTFAHSQDELERYRLKNKKLAGGRGTSQSLTQLNKVGMGSSGLEPLA
SKLLPTQNGLMSGGGSSPQLLARGTDPGGFGAEVSGGLGLPAGLSIGHAAGLGVRIALGG
GKVGEASASAPGSLSGSPPDNKIGSPPKSHLGPYAGLGGHLQPGGLGAPDLTGKGVPVPH
GHHHHHHPHAHGHPHAHPMSRVLYPPPPPPQQPQQPPPPQQQPQPPPHHAPPVDVYFQDP
RGGQQQQPPPPALTYDHQHYRAPYCQTQHPSSPYAPRYVHRQGAPPDSSLGGPAVPHAYP
PPSPADPYGPYPPPPPPPTHHAYASPPPPPLPGGYHMGHHGAPPPPPPPPHHHHHHHHHA
AAAAAAYDSRRAWRAPPPPHAPSPYPPGQRDGGMGPAHESGYAVRGGPLPPSHGHPEAGY
YQPPQGGHMPAAPHGPPQMQQQQQHRPAMRATVNNVANLARDVRLTVPRLQRCPGVVPQD
PYAQPPPSLEELHRRRAELLAQLKVARPGAPPVSPPPFAHSPTPPPLAMAPYGGEEYAPM
YSEEEEDGGGEACGRAPPLAYADSEFPSQYSPWSCEAISSYIAGKEAKPRDVMATSGSDM
TVKLSRSDTPSSQTECVRWGEAYHRSTDEMWLDQRRPKDEDPIIPFGESPTVSKWGAISR
SARTSFRNTGPVQATASQGSATRPVNVTDAPILTPCFADYFVNYSSSCGWNSPTNVYPSQ
PSPTPQYTDRERAMAPCSERDHMRLEMELQAVNHQISQQSQIHGMQAASNTALLQREAQA
LALQPSAGPHRSPEEAGGGVGGVGGVAYGASGGRSRRSGDDRPTAGGWGGDGVRCRDGRW
GWRRRAGG
NT seq 3807 nt   +upstreamnt  +downstreamnt
atgcccgtgcaagcgccgcagtggaccgagttcctgtcgtgccccatctgctgccatgag
tttgacgagacccttcggcgtcccgtgagcctgggttgcggccacacggcctgcaagacg
tgcctcaacaagctgcaccgcaaggcctgccccttcgaccagacggccatccacacggac
attgaggcgctgcccgtcaactttgccctgctgcagctgctgggcgcgcaggtgccggac
tcgcaggcgcccggcgtagcagtgccgagcgtggcagagaatggcgcccactacgacgcc
tccaagaagtgcgtggaggagctggcgctgctgctcaaacctctcagcggcgccaagggc
gtggtggcagcgtcgcagtcgcagctctcgcggcccatgcagcgcaagctggtgacgctg
gtcaactgccagctggtggaggaggagggccggctgcgggcgatgcgggcggcgcggtcc
ctgggcgagcgcaccgtcaccgagctcatcctccagcaccagaacccgcagcagctctcc
tccaacctgtgggcggccgtgcgcgcccgcggatgccagttcctcgggcccgccatgcag
gaggaggcgctgaagctggtcctgctggcgctggaggacggctcggcactgtcgcgcaag
gtgctcgtgctgtttgtggtccagcggttggagacgcgatttccgcaggcgtccaagacc
agcatcggccacgtggtgcagctgctctaccgcgcttcctgcttcaaggtgacgaaacgc
gacgaggactcgtcgctgatgcagctcaaggaggagttccgcacgtacgaggcgctgcgt
cgcgaacacgactcacagattgtgcagatcgccatggaggccgggcttcgcatcgcgccc
gaccagtggtcgtcgctgctctacggagacctggcccacaagtcgcacatgcagtccatc
atcgacaagctgcagacgccggcatcgtttgcgcagagcgtgcaggagctgacgatcgcg
ctgcagagaacgggcgaccccgccaacctcaaccagctccggccccacctggaactgctg
gccaacatcgaccccagcccagacgcggcggcgcccacgtgggagcagctggcggcggcg
atggttgcggtgaagacggtcgtgcagggactggtggacttcattcagaactacagcaag
aagggcttcgagcagacacagccgctgcagaacagcaagtacaagacgagcatgtgccgt
gacctgacacagcagggcggctgcccccgcggcgccagctgcacgttcgctcactcccag
gacgagctggagaggtaccgcttgaaaaacaagaaactagcgggcggtcgaggcaccagt
caatctctcacgcaactcaacaaggttggcatgggctcctcgggactggagccgcttgcg
tccaagctcctgcccacgcagaacggcctcatgagcggaggcggcagctcgccgcagctg
ctggcgcgcggcacggacccgggtgggttcggcgcggaggtcagcgggggcctgggcctg
ccggctgggctcagcatcggccacgcggccggcctgggggtgaggattgcgctgggaggc
ggcaaggtgggagaggcgagcgccagcgcgccggggtcgctgtcggggtcaccgccggac
aacaaaatcggctcccctccgaaatcccacctgggtccctatgcgggtctgggtggtcac
cttcaaccgggcggactcggcgctcccgacctgactggcaaaggtgtcccggtgccgcac
ggacaccaccaccaccaccacccgcacgcccatgggcacccccacgcgcaccccatgagc
cgggtgctctaccccccgccaccgcccccgcagcagccgcagcagccaccgccgccgcag
cagcagccgcaaccgcccccccaccacgcgccccccgtcgacgtttacttccaggaccca
cgcggtgggcagcagcagcagccgccgccgccagcgctaacgtacgaccaccagcactac
cgagccccgtactgtcagacccaacacccaagctccccgtacgctccccgctacgtgcac
aggcagggggcccccccggactcctctttggggggccctgccgtgccccacgcgtaccct
cccccgtcaccggcggacccctacggtccctacccgccgccaccgccgccccccacgcac
cacgcctatgcgtcgccacctccgccgccgctcccgggcgggtaccacatgggtcaccac
ggagcgccgcctcctccgccgccgccgccccaccaccaccaccatcaccaccaccacgcc
gccgcggcggcagcggcgtacgactctcggcgggcgtggcgtgcgccgccgcccccccac
gcgccgtcaccgtacccgccgggccagcgcgatggcggcatgggcccggcgcatgagagc
ggctacgcggtgaggggtgggccgctgccaccgtcgcacggccatccggaggccgggtac
taccagccgccgcagggcgggcacatgccagcggcaccgcacggaccaccgcagatgcag
cagcagcagcagcaccggcccgccatgcgtgccacggttaacaatgtcgccaatttggcc
cgcgacgtgcgtttaaccgtgccccgtctccaacgctgtcctggtgtcgtcccgcaggat
ccgtacgcgcagcccccgccgagcctggaggagctgcaccgccggcgcgccgagttgctg
gcgcagctgaaggtggctcgcccaggcgccccgcccgtctccccgccccccttcgcccac
tcccctacgccgccccccctcgccatggccccctacggcggagaggagtacgcgccaatg
tactcggaggaggaggaagatggaggcggcgaggcgtgcgggcgcgcgcctcccctcgcc
tacgcggacagcgagttcccgtcgcagtactccccgtggtcgtgcgaggccatcagctcg
tacatcgctggcaaggaggcaaagccgcgcgacgtcatggccaccagcggctctgacatg
acggtgaagctgagtcgtagcgacaccccgtcgtcgcagacggagtgcgtgcgctggggc
gaggcgtaccaccgctccaccgacgagatgtggctcgaccagcgccgccccaaggacgag
gaccccataatcccatttggcgagagccccacggtgtccaagtggggcgccatctcccgc
tcggcgcgcacctccttccgcaacacgggccctgtgcaggccacagcctcccagggctcg
gccacgcggcctgtcaacgtcaccgacgccccgattctcaccccgtgcttcgcagactac
tttgtcaactactcgagctcctgcggatggaactcgcccaccaacgtgtacccgtctcag
cccagccccaccccgcagtacacggacagggagcgggcgatggcaccttgctcggagcga
gaccacatgcggctggagatggagctgcaggcggtgaaccaccagatcagccagcagagc
cagatacacggcatgcaggcggccagtaacacggccctgctgcagagagaggcgcaggcg
ctggcgctgcagccgtcggcggggccgcatcgcagcccggaggaagccggcggcggcgtt
ggcggcgttggcggggtggcgtacggcgcgagcggcgggcgtagtcggcgctcgggcgac
gaccgacccactgcaggcggatgggggggtgacggtgtccgctgccgcgacggacggtgg
ggctggcgccgacgagcaggtggctga

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