Lethenteron reissneri (Far Eastern brook lamprey): 133354712
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Entry
133354712 CDS
T09663
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133354712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133354712
Enzymes [BR:
lrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133354712
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133354712
mRNA degradation factors
3'-5' decay
Ski complex
133354712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
PRIMA1
DUF5581_N
BDHCT_assoc
DUF3516
NirdL-like_HTH
CR_prot_dom_plant
Motif
Other DBs
NCBI-GeneID:
133354712
NCBI-ProteinID:
XP_061427748
LinkDB
All DBs
Position
48:complement(5591900..5620909)
Genome browser
AA seq
1046 aa
AA seq
DB search
MEATSSQVPPGMKRGMEFNKPDRPVPRGIVSLAAIQQGIDEFDLGGPSDDDDDDKEEEEE
NASTKKKQEERRDPTRAARPPVPDFHKRVPKPGVQWPFELDTFQKQAILRLENHESVFVA
AHTSAGKTVVAEYAIALSQRNMTRTIYTSPIKALSNQKFRDFKATFKDVGLLTGDVQLHP
EASCLIMTTEILRSMLYNGSDVIRDLEWVIFDEVHYVNDAERGVVWEEVLIMLPEHVNLI
LLSATVPNTLEFADWIGRTKRKKVYVVSTAKRPVPLEHFLYTGNSQKTQGELFLLLNSAG
TFATRAHADAVEAKRERTSKHAQSFGAKQPVQGGGPKQDKGVWLSLLDSLRRRDQLPVVA
FTFSRNRCDETASGLTTLALTTAAEQSEIHVFFRKCISRLKGTDRSLPQVLQMEMLLKRG
VGVHHSGILPILKEVVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTNFRD
LSPGEYIQMAGRAGRRGLDTTGMVIILCKMGVPEMSDLHKMMLGKPTKLESQFRLTYTMI
LNLLRVEAIRVEDMMKRSFSEFHTRKDAKEHEHRVRHLSARLSGMAEADCSGQLSDLPEY
HACARQFVELRCEALRGAAATPAGARALLPGRVVVANSSRAPNSLAVLLQVSTEAGGSRS
YTALVLCEQKLAAEGGGAAPPRPPPPPPAPTPDHLLATKVFVPEGACSHSVEKLRIDDIV
VIADRALKISPEKIIDDFNKRQIPRFRSDPPGQSVTTATQELMRLAEAAAAGGGGSGALR
PLDPVNDLHAKEAGAVEASMRARVLAERIPHFTCTASPKFQSQYARMEERSRVERELSHV
KFLMSDQSLHLLPEYHQRIQVLKQLGYLDESCAVQLKGRVACEVSSHELLVTELVFENAL
SELAPEEIAALLSCLVFQQKTRTEPTLTPTLKQGVERIRGVAERIALLQRECGISESVED
FVDQYKFGLVEVVYEWARGMPFAEIARLTDVQEGVVVRCVQRLHEACRDVRGAARVIGDP
ILRDKMERASDAIKRDIVFAASLYTQ
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggaggctacctcctcacaggtgccacccgggatgaagagaggcatggagttcaacaaa
ccagatcgccccgtcccgcgcggcatcgtgagcctcgccgccatccagcagggcatcgac
gagttcgacctgggaggccccagcgacgacgacgacgacgacaaggaggaggaggaagaa
aacgcgtcgaccaagaagaagcaggaggaacgtagggacccgacgagggcggcgcggcca
cccgtgcccgacttccacaagcgggtgcccaaacccggcgttcagtggccctttgagctg
gacacgtttcagaagcaggcgatcctgcggctggagaaccacgagtcggtgttcgtagcg
gcgcacacgtcggccggcaagacggtggtggccgagtacgccatcgcgctgtcgcagcgc
aacatgacgcggaccatctacacgtcgccaatcaaggcgctgtccaaccagaagttccgc
gacttcaaggcgacgttcaaggacgtggggctcctcacgggagacgtgcagctgcacccc
gaggcctcctgcctcatcatgaccaccgagatcctgcgctccatgctgtacaatggctcg
gacgtgatccgcgacctggagtgggtgatctttgatgaggttcactacgttaacgacgct
gagagaggcgtggtgtgggaggaagtgctcatcatgctgccggaacatgtcaacctcatc
ctgctgagcgccaccgtccccaacacgctggagtttgccgattggatcggccgcaccaag
cgcaagaaggtttacgtggtgagcacggccaagcggccggtgcccctggagcacttcctg
tacacgggcaacagccagaagacgcagggggagctcttcctgctgctcaactcggcgggg
acgttcgcgacgcgggcacacgcggacgccgtcgaggcgaagcgcgagcgcacgagcaag
cacgcgcagagcttcggggccaagcagcccgtgcaaggcggcgggcccaagcaggacaag
ggcgtgtggctgtcgctgctggacagcctgcggcggcgggaccagctgcccgtggtggcg
ttcacgttctcgcgcaaccgctgcgacgagacggcgtcgggcctcaccacgctggcgctc
accaccgccgccgagcagagcgagatccacgtcttcttccgcaagtgcatctcccgcctc
aagggcaccgaccgcagcctgccgcaggtgctgcagatggagatgctgctgaagagaggc
gtcggagtgcatcacagcggcatcctgcccatcctcaaggaggtggtggagatgctgttc
tcgcggggactcgtcaaggtgctgttcgccacggagacgtttgcgatgggcgtgaacatg
ccggcccgcaccgtggtcttcgactcgatccgcaagcacgacggcaccaacttccgagac
ctctccccgggagagtacatccagatggcggggcgcgcgggcagacgcggactcgacacc
acgggcatggtgatcatcctgtgcaagatgggcgtgccggagatgtccgacctgcacaag
atgatgctgggcaagcccacgaagttggagtctcagttccgcctcacgtacaccatgatc
ctgaacctgctgcgcgtggaggcgatccgcgtggaggacatgatgaagaggagcttctcc
gagttccacacgcgcaaggacgccaaggagcacgagcacagggtgcggcacctctccgcg
cgtctctctgggatggcggaggccgactgctcgggccagctgtcggacctgcccgagtac
cacgcttgcgcccgccagttcgtggagctgcgctgcgaggcgctgcgcggcgccgccgcc
acccccgccggcgcccgcgccctcttgccgggccgcgtggtggtcgccaactcgtcccgc
gcgcccaactcgctcgccgtgctgctgcaggtgtccacggaggccggcggttcgagatcg
tacacagcgctcgtgctctgcgagcagaagctggcggccgagggagggggggcagccccc
ccccgccctcctccgccccctccggcgccgactccggaccacctgctggccaccaaagtg
ttcgtgcccgaaggggcgtgcagtcactcggtggagaagctgcgaatcgacgacatcgtc
gtgatcgccgaccgcgcgctgaagatcagccccgagaaaatcatcgacgacttcaacaag
aggcagatcccgcgattcaggagcgacccgcccggccagtcggtaaccacggcgacgcag
gagctgatgcgtttggcggaggcggcggctgccggtggcggcggcagtggggccctgagg
cccctggaccccgtgaacgacctccacgccaaggaggccggcgcggtggaggcgagcatg
cgggcacgcgtcctcgctgagaggatcccgcacttcacctgcacggccagccccaagttc
cagtcgcagtacgctcgcatggaggagcggtcgcgcgttgagagggagctctcgcatgtc
aagttcctcatgtccgaccagagcctgcacctcctgcccgagtaccaccagcgcatccag
gtgctgaagcagctgggctacctggacgagtcgtgcgccgtgcagctcaagggccgcgtg
gcgtgcgaggtgagcagccacgagctgctcgtcaccgagctcgtgtttgagaacgcgctg
tccgagctggcgccggaggagattgccgcgctgctctcttgcctcgtgttccagcagaag
acgcgcacggagcccacgctcacgcccacactcaagcagggcgtggagcgaatccgcggc
gtggcggaacgcatcgccctgctgcagcgtgagtgtggcatctcggagtcggtggaggat
tttgtggatcagtacaagttcggcctggtcgaggtcgtgtacgagtgggcccgcggcatg
ccgtttgcggagattgcgcggctcacggacgtgcaggagggggtggtggtgcgctgcgtc
cagcggctgcatgaggcgtgccgggacgtgcggggagcggcgcgcgtcatcggggatccc
atcctgcgcgacaagatggagcgggcgtcggacgccatcaagcgcgatatcgtgttcgcc
gccagcctctacacgcagtga
DBGET
integrated database retrieval system
