Lethenteron reissneri (Far Eastern brook lamprey): 133354733
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Entry
133354733 CDS
T09663
Name
(RefSeq) tenascin-like
KO
K06252
tenascin
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04510
Focal adhesion
lrj04512
ECM-receptor interaction
lrj04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133354733
04518 Integrin signaling
133354733
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133354733
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lrj00536
]
133354733
Glycosaminoglycan binding proteins [BR:
lrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133354733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
EGF_2
Fn3_Dep-1_3rd
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
EGF_Tenascin
Fn3_VIN3
Fn3_Dep-1_2nd
FN3_Tor_3rd
hEGF
Mtb12_C
EGF
DUF7949
MT0599
DUF5979
Motif
Other DBs
NCBI-GeneID:
133354733
NCBI-ProteinID:
XP_061427779
LinkDB
All DBs
Position
48:complement(6258729..6423998)
Genome browser
AA seq
1530 aa
AA seq
DB search
MRRRATSSAGAMALLPKTPSPLAAIILLALAASASAASMTVETHRHEPGSVGAAPHDLPH
RNQTLGGGSDEQQLQPIVFHHVYNINVPPGSLCAVDLDAGPPDGAGFDSRSVVGSGSGDG
DIGGGESDLGTFTQKTHETGGQVVFTHRISIPKRACGCSTEGLPDLRELVRRVELMEQEI
SSLRQQCSSAACCGAAPGAVGGTDIASPCNGHGTFSTESCGCVCDKGWTGKTCSQPACPS
DCGGRGTCVDGVCDCEEGFGGPDCGQATCLNDCSNRGVCVNGVCVCERGFVGADCSQPGC
PNDCNGRGRCVDGKCLCARGFSGEDCRESRCPNNCNNRGRCVNGRCVCQRGYGGEDCGEG
GACANDCSDHGKCVAGRCVCEPGFTGPECSVLSCPNDCNGHGFCDNGICVCDKGFVGEDC
STPFIGPKEMSFNYITESSVQVGWAALPFPVESWEITFTSEDTPDGLLSTLSSTETSHTQ
TGLEPGVKYDVSLVAIKDNKKSQPTTSFFSTLIDSPKDLKVDDVKDTTAQLSWTSPSALV
DGLVLTYGPTRPGARKTEVPLQPTVTDHALQGLRPGVHYTVTLHSVRGPQMSDKQIQSFV
TAIDGAKNLQVVSVTDSTMDIEWENTQSPIDHYTVHYTTSSGDPPGDIKVYKSPQPTTKT
TITGLQPGTEYKISVVAVKGSKGSAPASTTGRTVIDGPKDLQVTNSSDTTISLSWTAPST
SFDRYTITFASETSDDGREVTVPADATTATLSDLEPGTKYAIRLRAEKGSVHSAWAFTSG
KTGCKPATAMRFSDITPTSLVASWASPPATPDYYIVKYSQRNREPHTVAVSGGQNYVVLS
DLKPDTEYRVRVISVKGVSSSKPLIGDVFTASGSLQPPCPEANAEDEDLNSRETGEPDYV
EIQSASNDAQKCKFTENAKSALTTPPPVDKELYGLSPIDVESSTMRLSWASKPFAFQTFV
VKYGPVSAGKMRKVVVAGDSRSLEISGLKGNTEYVVSLAGVRDDTLSPPLTIRVTTATAS
VRVRRSLNLRRPDSVHKKQLAATLKDEGEISSQLTDVSASIPHSKRGSDNHVSGDKAGLE
VTLVKSASVIDGKAPEAKSENGYFSEIYSFLSGLTTDFSSSAKGKAIETPRNIDFKDIRE
TSVVVAWIAPSADADSFKIAYVPTAGGEPESRRVASSLTEVMLTRLTPGTEYEVNLISVK
SFQESDPLMGTFTTLLGSPSVLSAEDVTDSSALLKWKPTIGPVDTYSLTYSFEDGEPVTV
TVSGGTVEYQLTDLNPDTPYIAKVRAVKGAQQSADTAVAFVTARKKTSFPMDCSEALQGD
QASGVFTIFLNGNASQPLSVYCDMTTDGGGWIVVQRRQNGLTDFFRNWKAYEKGFGDIND
EFWLGLQNIFALTSQGRYELRVDLRDGEWGAHAVYDHFSVANASGLYRLKVGEYSGTAGD
SMTYHEGRPFSTVDRDNDVAITNCAISYHGAWWYKNCHRANLNGKYGDKSHSQGVNWYHW
KGHEYSVPFVEMKIRPFAAAKRGSRQHLRN
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgtcgagcgaccagctcggccggcgccatggccctccttccaaagactccatcg
ccgctggccgccatcattttgctggcacttgcagccagcgcgtcggccgccagcatgacg
gtggagacgcaccggcacgagccgggcagcgtcggcgccgcaccacacgacttgccgcac
cgcaaccagacgttgggcggcggctcggacgagcagcagctgcagcccatcgtcttccac
cacgtgtacaacatcaatgtcccgccgggatcgctgtgtgccgtcgacctggacgcgggc
ccccccgacggcgccggcttcgactccaggtctgtggtcggcagcggtagcggcgacggc
gacatcggcggcggcgagtcagacctgggcaccttcacgcagaagacgcacgagacgggc
ggccaggtggtgttcacgcaccgcatcagcatccccaagcgggcgtgcgggtgcagcacg
gaggggcttcccgacctgcgggagctcgtgcggcgcgtggagctcatggagcaggagatc
tcgtcgctgcgccagcagtgctcctctgccgcgtgctgcggagcagcgcccggagccgta
ggtggcacagacatcgcgtcgccctgcaacgggcacggcaccttcagcaccgagtcgtgc
ggctgcgtctgcgacaagggctggacgggcaagacgtgctcccagccggcgtgccccagc
gactgcggcgggcgcggcacctgtgtggacggcgtctgcgactgcgaggagggcttcggc
ggtcccgactgcgggcaggccacctgcctcaacgactgcagcaaccgcggcgtgtgcgtc
aacggcgtctgcgtctgcgagcggggcttcgtgggcgccgactgctcccagccgggctgc
cccaacgactgcaacggcaggggccgctgcgtcgacggcaagtgcttgtgcgcccggggc
ttttcgggagaggactgccgcgagtcgcggtgccccaacaactgcaacaaccgcggccgc
tgcgtcaacggacggtgcgtctgccagaggggctatggcggcgaggactgtggcgagggg
ggagcgtgtgccaacgactgcagcgaccacgggaagtgcgtggccgggaggtgcgtgtgc
gagccggggttcaccggccccgagtgcagcgtgctcagctgccccaacgactgcaacggg
cacggcttctgcgacaacggcatctgcgtctgcgacaaaggcttcgtcggggaggactgc
agcacgcctttcatcggccccaaagaaatgtccttcaattacatcacggagtcttcagtg
caggtggggtgggcagctctacccttccccgtcgagagctgggagatcacgttcacgtcc
gaggacaccccagacggacttctgtcgacgctgagcagcaccgagacgagccacacgcag
accggtctggagcctggcgtcaagtacgacgtctccctggtggccatcaaggacaacaag
aagagtcaacccaccacgtccttcttcagcaccttgatcgacagccccaaggatctcaag
gtggatgacgtgaaggacaccacggcgcagctgtcctggacctctccgtccgccttggtg
gacggcctcgtgctcacctacggcccgaccagaccaggcgctcgcaagacggaggtgccg
ctgcagcccacggtgacggaccacgcgctgcagggcctgcgcccgggcgtgcattacacc
gtcaccctgcactccgttcgcggcccccagatgagcgacaagcagatccagagcttcgtc
accgctattgacggggcaaagaatctgcaggtggtgtcagtgaccgactcgacgatggac
atcgagtgggagaacacccagtctcccatcgaccactacacggtgcattacaccacctcg
tcgggtgacccaccaggcgacatcaaggtgtacaagagcccacagcctaccactaagaca
accatcactggcctgcagcctggaactgaatacaagatatctgtggtggctgtgaaggga
agcaaaggaagtgctccagcaagtacgaccggacgaactgtcattgacggtccaaaggac
ctgcaggtcaccaattctagtgacaccaccatctcgctcagctggacggctcccagcacc
agcttcgaccgctacaccattacgtttgcctcggagaccagcgacgacgggcgggaggtg
accgtcccggccgacgctaccacggccaccctctctgacctggagccaggcacaaagtac
gccatccgcctgcgggccgagaaggggtctgtacacagcgcctgggccttcaccagcgga
aagactggctgcaagccggccactgcaatgcggttttcggatatcactccgaccagctta
gtggcatcttgggcatcgccacccgctacacccgactactatattgtcaagtacagccag
aggaacagagagccacacacggtcgcagtgagtggaggacaaaactatgtggtgttgtct
gacttaaaacctgacacagagtacagagtgcgggtcatttccgtcaaaggagtgtcttcg
tccaaacccctgattggtgacgtcttcacagcttcaggaagcctccagccaccgtgcccc
gaagcgaacgccgaggatgaggatctgaatagcagagaaacgggggaaccagactacgtc
gagatacagtctgcctccaacgacgcgcaaaaatgcaaattcacagagaacgccaagtca
gcgttgaccacgccaccccccgtcgacaaggagctgtacggcctcagccctattgacgta
gagtcctcaacgatgaggctgtcgtgggcgtcgaagcccttcgctttccagacctttgtc
gtaaagtacgggccggtgtccgccgggaagatgcgtaaagtagtggtggccggagattcc
cggtcgctcgaaatttcagggctaaaaggcaacaccgagtacgtggtttcactcgcaggg
gtgcgtgatgataccctatcaccgccactgacaatacgtgtcacgacagccacagcctcc
gtccgcgtgagaagaagccttaatttgaggcgtccagacagcgtccacaagaagcagttg
gctgctacgcttaaggatgaaggtgaaatctcgagccaattgacagacgtgtcagcctcg
ataccccacagcaaacgcgggtctgacaatcacgtttcaggggacaaagcaggtctggag
gtgacacttgtaaagtctgcatctgtgattgacggcaaggcacccgaagctaaatctgag
aacggttatttctccgagatatattccttcctcagtggtttaactacagatttcagcagc
tcagctaagggaaaagcgatagagactccccggaacattgactttaaggacatcagggag
acatccgtcgtcgtggcctggatcgctccgtccgccgacgcagacagcttcaagatcgct
tacgtcccaacggctggaggcgagcccgagagccggcgggtggcttcgtcgctgacggag
gtcatgctgacccgcctgacccccggcacggagtacgaagtgaaccttatcagcgtcaag
agcttccaggagagcgatccccttatggggaccttcaccaccctgctgggtagcccgtcc
gttctgagcgcggaggatgtcaccgacagctcggccctgctcaagtggaagcccacgata
ggccccgtggacacctactcgctcacctacagcttcgaagatggagagcccgtgaccgtc
accgtttcgggcggcacggttgaataccagctgaccgacctgaatcccgacacgccgtac
atcgccaaggttcgcgcggtcaagggagcccagcagagcgcggacacggcggtcgccttc
gtcaccgcccgaaagaagacgagcttccccatggactgcagcgaggccttgcagggcgac
caggccagcggcgtgttcaccatcttcctgaatggcaacgccagccagccactgtcggtc
tactgcgacatgaccaccgatggcggaggatggatcgtcgtacagaggcgtcaaaacggg
ctcacggacttcttccgtaactggaaggcgtacgagaaaggctttggagacatcaacgat
gaattctggctcggcctccagaacatctttgcgctgacgtcgcaagggcgctacgagctg
cgcgtggacctgcgggacggcgagtggggcgcccatgccgtgtacgaccacttctccgtg
gccaacgccagtggcctctaccggctcaaagtcggcgaatacagcgggacggccggagac
tcgatgacctaccacgagggccgtccgttctcgacggtggaccgggacaacgacgtggcc
atcaccaactgcgccatctcctaccacggcgcctggtggtacaagaactgccaccgggcc
aacctcaacggcaaatacggagacaaaagccacagccagggcgtcaactggtaccactgg
aaaggccacgaatactcggttccgtttgtggagatgaagattcgcccgttcgccgccgcc
aagaggggcagcagacagcacctgcggaattag
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