Lethenteron reissneri (Far Eastern brook lamprey): 133355412
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Entry
133355412 CDS
T09663
Symbol
PBRM1
Name
(RefSeq) LOW QUALITY PROTEIN: protein polybromo-1
KO
K11757
protein polybromo-1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133355412 (PBRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrj03021
]
133355412 (PBRM1)
03036 Chromosome and associated proteins [BR:
lrj03036
]
133355412 (PBRM1)
Transcription machinery [BR:
lrj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133355412 (PBRM1)
Chromosome and associated proteins [BR:
lrj03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
133355412 (PBRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
TP53IP5
Motif
Other DBs
NCBI-GeneID:
133355412
NCBI-ProteinID:
XP_061428677
LinkDB
All DBs
Position
51:6772326..6805795
Genome browser
AA seq
1898 aa
AA seq
DB search
MGVKRRRTASPSSSASGGDAEEVPPPTAAAAVPPRKRRRPHTQAVDPLGVCHELYNTLRD
TRDGHARLLCEFFIRVPKRRNLPDYYDVVSQPMDLLKIQQKLKTEEYNSVDQLTTDIQLM
VNNTKAYYKEGTVEHRDACRLWELYVSKRNELIHPPLDVATATSAAAASAAAVAAATTAK
EEEAEEEEEEVDEAEEEEEEEEEEEAGEEEEEEEEEAEAEAETEAKTEDPEQEQGQESGA
GTTEDDEMPGKPRVRGLKEHLEQLFETVATYSDPSGRLISELFQKLPSRTHYPDYYDVIK
DPIDLKTIAQRIQQTGFYKSITEMARDVETLVKNARNYNEPGSQVFKDAHTIKKIFNQKK
TELEHSLEPVKTSLRIRNRRSAQGDRLSAITMTLQYGSESEDEEQQQPPNESLNATVRRS
RLPADWQPKEGTRPRGRPPRRRSDEISSCAGDDSMQYEDAPNSDEDDDADGGGSSVGGAA
GGGTTAVSPGGSSESGGSLLQRLLDSVQNARGAQGQLLADPFLRLPSRKEYPEYYVLIKQ
PIALLHIRSKLRAGEYTSVDQLESDLTLMFENAKRFNMPTSSIYKRAVKLQHLLQIKKRL
LLRSADISRDLGDDPESSTASTPDTASGKRKRIISRILLTGSSGKKVYKTHKRRDADSAL
KRRLRALYAAAVEARDPASGRRLVDLFMVRPSRKDYPDYYKIILEPIDMRNIEQNIRADK
YTSQEALMDDFQLMFRNARHYNEEGSQVYNDAVTLEGLIREKLKEMGPLTEEDESPSPKL
KLGRKSGLSPKKIRSLTPLQQKLSDLYEAVRSHTDRRGRKLCTIFLRLPSRSELPDYYVT
IKKPVDMEKMRAHMVAGKYQDVESLVEDFTLMFNNACTYNDPDSLIYKDALVLHRVLLRA
RRQLCDNEDDEMDAIAGGGGGGGAPKVGLLVRELINNLFVSVLSHQDEEGRCYSDSLADV
VSCPLAVEAGAELPATAATTTPVVVAPVAAETQDHRLLTFETIRRNIERGRYRRLDVFQE
HMFEVLDRARKMNRTDSEIYEDAVELQQFFIKIRDELCKNGEMLLSPALSYTAKHLQHDL
EKERKEKVPAEAAEDRVKRDEDGKDPSDFKKSEGSDTRAGGQRTYSQDCSFEDNMYRVGD
FVYVEPSSSDLQPHIACIEKLWVDDNTGEKWLYGCWFYRPTETFHLATRKFLEKEVFKSD
YYNTVPVSKILGKCVVMFVKDYFKSRPDGLRAEDVYVCESRYSTKVKAFKKIKLWSMPPS
TARLVARDEPLPVVRVASVFASRERDREQREREQRERERPRDGMTAATLVGPITAGLDEA
KVAAAAAAAAAAGMMEESNDDIIDKEREDVPVEMPNGEPGCQYFEQLGMSGRYHKIGDFV
YTRVEGRERPRIGRVEKLWRDKDGRVWFFGPFFIPPEDTEHEPTKMFYKKEVFLSTVEET
CTMDTVIGKCCVLAFKDYLVCRATEVAERDVYVCESRYNEAERHMKRFKGLRRFSLSAKV
LDDEIYYFRKPITPAKEPSPLLDRKIAELEARFAEQDGGVGGAGCAGGEEDDEGMEEEGD
LADHAALSQLHAPLTGDLDSSAYLTPQTTPKAVRGKAKDGKRKTNPSGYILFSSEMRAVV
KAKNPEYTFGELSRIVGTEWRNLDAVKKAEYEDRAAKQAELQERERAAQQQQASASPRAG
TPSGGAIMGVVPPPTPMGALQQQLPTAAGFIGGFPPPLVSLQGSIEGLGAPPLIAPPAPM
LPFYPQPIAITSGGRVMGQQVGAVGAGQTPGAGFQQSQQPPPPYPAPQVAVAAVSSLPPA
PMFVAAPPRPQRLLHSEAYLRYIENLNNECPTVSKWEQTVTARREDVPLSREQEARLPTH
WLQGKGAHNSLAHALWRLRDIMLRDALNIRQAHSLDCD
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgaagcgacggcgcacggcctcgccttccagcagcgccagcgggggggatgct
gaagaggtcccccccccaactgctgccgccgcggtgcccccccgcaagcggcgccggcca
cacacgcaagccgtggatcctctgggcgtgtgccatgagttgtacaacactctgcgggac
acgcgggatggacacgcgcgactgctgtgtgaattcttcatccgcgtgcccaagcgcagg
aacctccccgactactatgacgtggtgtctcagcccatggacctgctgaagattcagcag
aagttgaagacggaggagtacaacagtgtggaccaacttaccaccgacatccagctaatg
gtcaacaacaccaaggcctattacaaggagggcacggtggaacaccgcgacgcgtgtcgc
ctctgggagctctacgtctccaagcgcaacgagctcatccacccgcccttggacgtcgcc
accgccaccagtgccgctgccgcttccgccgccgctgtcgcagctgcgacgactgccaaa
gaggaggaggcggaggaggaggaagaggaagtggacgaggcggaggaggaggaggaggag
gaggaagaggaggaagcgggggaggaagaggaagaggaggaggaagaagcggaagcggag
gccgagactgaggctaagacggaggatcctgagcaggagcagggtcaggagagcggagcg
ggcaccacggaggacgacgagatgcctgggaagccgcgtgtgcggggcctgaaggagcac
ctggaacagctgtttgagacagtggcgacgtacagcgacccatctggacgcctcatcagc
gagctctttcagaagcttccgtcacgcacgcactaccccgactactatgacgtcatcaag
gatcccatcgacctgaagacgatcgctcagaggatccagcagaccggcttctacaagagc
ataacggagatggctcgcgacgtggagactctggtgaagaacgcacgcaactacaacgag
ccgggatctcaggtcttcaaggatgcgcacacgatcaagaagatcttcaaccagaagaag
acggaactggagcactcgctggagcccgtgaagaccagcctcaggataaggaaccggcgc
tcggcgcagggcgaccgcctgtcggccatcaccatgacgctgcagtacggctccgagagc
gaagacgaggagcagcagcaaccgccaaacgagagtctcaacgccaccgtccgacggtcg
agactaccggcggactggcagccaaaggaaggaacgcgccccagaggacgtccgccgcgg
agacggagcgatgagatcagctcgtgcgcaggcgacgacagcatgcagtacgaggacgcg
ccgaactctgacgaggatgacgatgccgacggcggcggcagcagcgtcggcggcgccgcc
ggggggggcacgaccgccgtgagtcccggcgggagctccgagtccggcgggagcctcctg
cagcggctgctcgactcggtgcagaacgcgcgcggcgcccagggtcagctgctcgccgac
cccttcctgcggctgccctcccgcaaggagtaccccgagtactacgtgctcatcaagcag
cccatcgcgctgctgcacatcaggagcaagctgcgcgcaggcgagtacacgagcgtcgac
cagctggagtccgatctcacgctcatgttcgaaaacgccaagcgcttcaacatgccgacg
tcctccatctacaagcgcgcagtcaagctccagcacctgctgcagattaagaagcgcttg
ctgctgcgctctgcggacatttcacgggacttgggcgacgacccagagagcagcacggcc
tccacgcccgacaccgccagcggcaagcgcaagaggataatcagccgcatcctgctcacg
ggctcctcgggcaagaaagtgtacaagacgcacaagcggcgagacgccgactcggcgctg
aagcgtcggctgcgggccctgtacgcggccgcggtggaggcgcgcgaccccgcgtcgggg
cgccgcctcgtcgacctgttcatggtgcggccgtcgcgcaaggactaccccgactactac
aagatcatcctggagcccatcgacatgcgcaacatcgagcagaacatccgcgccgacaag
tacaccagccaggaggcgctcatggacgacttccagctcatgttccgcaacgcgcggcac
tacaacgaggaggggtcacaggtgtacaacgacgccgtgacgctggaggggctgatccgc
gagaagctcaaggagatggggcccctgacggaggaggacgagtccccctcgcccaaactc
aagctcggccgcaagagtgggctgtctccgaagaagatccgaagcctgacgccactgcag
cagaagctgagcgacctgtacgaggctgtgcgcagccacacggaccgccgcgggcgcaag
ctgtgcaccatcttcctgcggctgccgtcgcgctccgagctgcccgactactacgtgacc
atcaagaagcctgtggacatggagaagatgcgcgcccacatggtggcgggcaagtaccag
gacgtggagtcactcgtggaggacttcaccctcatgttcaacaacgcgtgcacctacaac
gacccggactcgctcatttacaaggacgcgctggtgctgcaccgcgtgctcctccgcgcc
aggcgccagctgtgcgacaacgaagacgacgagatggacgcgatagccgggggcggcggt
ggtggcggcgcgcccaaggtgggcctgctcgtgcgcgagctcattaacaacctcttcgtg
tcggtcctgagccaccaggacgaggaggggcgctgctacagcgactcactcgccgacgtg
gtgtcctgcccgctggccgtcgaagccggcgccgaacttcccgccaccgccgccaccacc
acccccgtggtggtggcgccggtggccgccgagacccaggaccaccggctgctgacattc
gagacgatccgcagaaacatcgagagggggcgctaccgtcgtttggacgtgttccaggag
cacatgttcgaagtgctggacagagcgcgcaagatgaaccgcacggactcggagatctac
gaagacgccgtggagctgcagcagttcttcatcaagatccgcgatgagctgtgcaagaac
ggagagatgctgctgtcgccggcactcagctacacggccaagcaccttcagcacgacctg
gagaaggagcgcaaggagaaggtccccgccgaggcagcggaagatcgcgtcaagcgcgac
gaggacggcaaggacccgtccgacttcaagaagagcgaggggtcagacacgcgggcggga
gggcaacgaacgtacagccaggactgcagcttcgaggataacatgtaccgcgtgggcgac
tttgtctacgtggagccgagctcctcggacctccagccccacatcgcctgcattgagaag
ctttgggtggacgataatactggagagaagtggctgtatggctgctggttctaccggccc
acggagaccttccacttggccacacgcaagttcctcgagaaggaggtcttcaagagcgac
tactacaacacggtgcccgtctccaaaatcttgggcaagtgcgtcgtcatgttcgtcaag
gactactttaagtcgcgcccggacgggttgcgcgcggaagacgtgtacgtgtgcgagtcg
cgctactccaccaaggtgaaggccttcaagaagatcaagctgtggtccatgccgcccagc
acggcacggctcgtggcgcgcgacgagccgctgcccgtggtgcgcgtcgcctccgtgttt
gcgtcgcgagagcgcgacagggagcagcgcgaaagggagcaacgcgagagggagcgcccg
cgcgacgggatgacggcggcgacgctcgtggggcccatcaccgcaggactcgacgaggcc
aaggtggccgcggcagctgcggcggcggcggccgccgggatgatggaggagagcaacgac
gatatcatcgacaaggagcgggaggacgtgccggtggagatgcccaacggagagcccggc
tgccagtactttgagcagctgggcatgagcggccgctaccacaagattggggacttcgtg
tacacgcgggttgagggtcgcgagcgaccgcgcattggcagggtggagaagctgtggaga
gacaaagacgggcgggtgtggttcttcgggccgttcttcatccctcccgaggacacggag
cacgaaccgaccaagatgttctacaagaaggaggtgttcctgagcaccgtggaggagacc
tgcaccatggacaccgtcatcggcaagtgctgcgtcctcgccttcaaggactacctggtg
tgccgcgccaccgaggtggcggagcgcgacgtgtacgtgtgcgagagccgctacaacgag
gccgagcgccacatgaagcgcttcaagggcctgcggcgattctcgctgtcggccaaggtc
ctcgacgacgagatatactacttccgcaagcccatcacgccggccaaggagccgtcgccg
ctgctcgaccgcaagatcgccgagctggaggcgcgcttcgcggagcaggacggcggcgtc
ggtggtgccggctgcgccggcggagaggaggacgatgagggcatggaggaggagggcgac
ctggcggatcacgcggcgctctcgcagctccacgcaccgctaacgggcgacctcgactcg
tccgcgtacctcaccccgcagacgactccgaaggcggtgcggggcaaggcgaaggacggc
aagcgtaagacgaacccgagcggctacatcctgttcagcagcgagatgcgcgccgtggtg
aaggccaagaaccccgagtacaccttcggcgagctgagccgcatcgtcggcacggagtgg
cgcaacctggacgccgtcaagaaggccgagtacgaggaccgcgcggcgaagcaggcggag
ctgcaggagagggagcgcgcagcccagcagcagcaggcgtcggcgtcgccgcgcgctggc
acgccctcggggggcgccatcatgggagtcgtgccgcccccgacgcctatgggagcgctg
cagcagcagctgcccaccgccgctggattcatagggggcttccctcccccgctggtcagc
ctacagggctccatagaggggctgggggcccctcccctcattgctccgccagcccccatg
ctgccgttttacccccagcccatcgccatcacttcgggtggacgtgtcatggggcagcaa
gtgggggcagtgggggcaggccagacaccaggagctggcttccaacagtctcagcagccg
ccccccccgtacccggcgccccaggtggcggtggcggccgtgtcgtcactgccgccggcg
cccatgttcgtggcggcgccgccccggccccagcgcctgctgcactcggaggcgtacctc
cgctacatcgagaacctcaacaacgagtgccccaccgtcagcaagtgggagcagacggtc
accgcgcgacgggaggatgtccccctgagccgtgagcaggaagcacgcctgcccacacac
tggctgcagggcaagggggcgcacaacagcctggcgcacgcgctctggcgcctgcgcgac
atcatgctgcgcgacgccctcaacatccggcaggcgcactcgctcgactgcgactaa
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