Lethenteron reissneri (Far Eastern brook lamprey): 133356171
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Entry
133356171 CDS
T09663
Symbol
SYMPK
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
KO
K06100
symplekin
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03015
mRNA surveillance pathway
lrj04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133356171 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
133356171 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrj03021
]
133356171 (SYMPK)
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133356171 (SYMPK)
Transcription machinery [BR:
lrj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133356171 (SYMPK)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133356171 (SYMPK)
U7-dependent histone pre-mRNA processing factors
133356171 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
V-ATPase_H_C
DUF3915
Motif
Other DBs
NCBI-GeneID:
133356171
NCBI-ProteinID:
XP_061429532
LinkDB
All DBs
Position
53:8461000..8489444
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AA seq
1369 aa
AA seq
DB search
MTAAQRFGMASELHSEAAEETGSTTDSRPTSDRVVDLINQASLTTNESQKLLLLKQVQEL
IVNKEPALLDNFLDEMIAFQNDRLLEIRKFIIGFMEEACKKDNELLLKLIANINMLLHDE
NVNVVKRAILSLTQLYRVMLQWLAGHRKVSEEQEAVWEMMSAMRNDIMQLLDSENDGVRT
HAIKFVEMLVVAMSPRTQDSEVTKRQEGEACMERIPRDHPLLKQSQLREMGEAALERLLS
FMVHPAISSINLTAALGSLATIARQRPVFMARVVQAYETLHANLPPTLAKSQVSSVRKNL
KLHLLGLLKLPSSIEFHPQMSTLLYDLGTSPQELQRNMPSARELRRRMHRDDTEQHSKKM
KMETMQDEDDDKETEAVPAPRPKVAPLPSVLSAIDVTAQHILPMLTPDKVANLVLVSMVL
LPDTMPASFQATYTPIESAGTHAQIQHLARLMATQISNAGLGPGVEMEKEREKEREREKE
REKEREKKANEEEENTKNSLIKRKVQVISVMATSYSGAGGAMPATDEGATPTPRRLPEPI
IPAPQTRLAGPGIRRKVFRVADVLQPLSSEEMECMSRAAVGRILQADRTCMRGGAGHVRN
QLLARLAARFGGDMRAQLLECVLADMRTQGDLAFTWLFQEYATYLESEQPSALDDYDDCL
TGLLSGLLEKGDQRDGLFSRIVLEAPRMTGRALEVLRRYCEDETRVYLGMSTLRELVLKR
PSQKMLYMHVLLELCSHDKDKVRSQALLFVKRLYEKEELRNCIETFALNMLQCLVHPNPP
SVCFADDRDTEVASSWTDDSIRQCLYVYLSLLPLNHTLIHELAAVYTEAIADIKRTILRI
IEQPIRGMGMNSPELLLLVESCPKGAETLVTRSLHILTEKAPPSPELVKRVRDLYQKRVS
DVRFLIPVLNGLEKKEVIAALPKLIKLNPIVVKEVFNRLLGTQHGEGGVAMSPLTPGELL
VALHNIDTTKCDMKSIIKATSLCFAERWVYSSEVLAVVMQQLMEQNPLPVLLMRTVIQSL
SMYPRMGAFVMNILQRLIIKQVWKHPKVWEGFIKCCQRTKPQSFGVLLQLPPAQLAVVFD
KCPEIREPLLMHVRSLTPQQQNHISKSTIAVLEMGPIIKIEQESEHILPAQGEARRAMDT
HGIRDDGSLPCWANPHRPDLHPRVNMNMHPAQHAPQHAPQHAHPHPHXHPHLQHLQPMQP
MQHLKLAQLAQMQPGHAPTPGGRAEPPLRPAVHLEPRPESVAGAQSQPEPEHSRANSAVT
VASAAAAASEAKPSAVLERAEVADATAGAGGRSMSKEDKAKADVEGDSAGLRPEEVKPAA
REGAAEVHAAQGVPFARVMPAGSLGRPDPASDAAQTPLPLGLVVSDTQI
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggcgcagcggttcggcatggcctcggagctgcactcggaggcggccgaggag
acgggcagcaccacggatagtaggcccacgtctgaccgggtcgtggacttgatcaaccag
gcttcactcacaacaaatgaatctcaaaagttgctcctgctgaaacaggttcaggaactg
attgtcaacaaggaaccagccctcctggataacttcctcgatgaaatgatcgcgtttcaa
aatgacagactattggaaattcgtaaatttatcattggcttcatggaagaagcatgtaag
aaggacaacgagctgcttctgaagctgatcgcgaacatcaacatgctgctgcacgacgag
aacgtgaacgtggtgaagcgcgctatcctcagcctcacgcagctgtatcgcgtcatgctg
cagtggttggcgggccaccgcaaggtgtccgaggagcaggaggcagtgtgggagatgatg
agtgcgatgcgcaacgacatcatgcaactgctcgactcggagaacgacggcgtgcgcacc
cacgccatcaagttcgtcgagatgctcgtggtggccatgtcaccacgcacgcaggactcg
gaggtcaccaagcggcaggagggagaggcctgcatggagcgcatcccgcgcgaccacccc
ctgctcaagcagagtcagctgcgagaaatgggtgaggcggcgctggagcggcttctcagc
ttcatggtgcacccggccatctcctccatcaacctgacggctgcactgggctccctggcc
accatcgcacgccagcggcccgtcttcatggcccgcgtggtacaggcctacgagacgctt
catgccaatttgccaccgacgcttgccaagtcacaggtgagcagcgtgcggaagaacctc
aagctgcacctgctggggctgcttaaacttccgtcgtccatcgagttccacccgcagatg
agcaccctcctctacgacctgggcaccagcccacaggagctgcagcgcaacatgccgagc
gcgcgcgaactgcgacgccgcatgcaccgcgacgacacggagcagcacagcaagaagatg
aagatggagaccatgcaagacgaagacgacgacaaggaaacggaggcggtgccggcgcca
agacccaaggtggcgccgttgcccagcgtgctttctgctatcgacgtcacggcgcagcac
atcctgcccatgctcaccccggacaaagtggccaatctggtgctggtgagcatggtgctc
cttccggacacgatgccagcctctttccaggccacctacacgcccatcgagtcggccggc
acgcacgcccagatccagcacctggctcgtctcatggccacgcagatctccaacgccggg
cttggaccaggcgtggagatggagaaggagagagagaaggagcgtgagcgagagaaggag
agagagaaggagcgagagaagaaggcgaacgaggaggaggagaacaccaagaactcgctc
atcaagcgcaaggtgcaggtcatctccgtcatggccacctcctactccggtgccggtgga
gccatgcccgcgacggatgagggggcgactccgaccccgcgccgcttgcccgagcccatc
atccccgcgccgcagacccggcttgctggcccaggcatacgcaggaaggtattccgcgtg
gctgacgtgctgcagccactgtcgagcgaggagatggagtgcatgtcgcgggccgctgtg
ggccgcatcctccaggcggacaggacgtgcatgcgcggtggcgccggccacgtgcgcaat
cagctgctggcgcggctggcggcccggtttggcggggatatgcgggcccagctgctggag
tgcgtgctggctgacatgcgcacccagggagacctcgccttcacgtggctcttccaagag
tacgccacctacctggagagcgagcagccctcggcgctcgacgactacgacgactgcctc
acggggctgctcagcggcctgctggagaagggcgaccagcgggacgggctgttctccagg
atcgttctggaggccccacggatgacaggacgtgcgctcgaggtgttgaggaggtactgc
gaggatgagacccgcgtgtacctgggcatgtcgacgctgcgggagctggtgctgaagcgg
ccgtcgcagaagatgctctacatgcacgtgttgcttgagttgtgctcccacgacaaggac
aaggtgcgctcccaggcgctgctgttcgtgaaacgtctctacgagaaggaggagctgcgg
aactgcatcgagacgtttgcgctcaacatgctgcagtgtctggtgcaccccaacccgccc
tccgtgtgctttgctgacgaccgcgacaccgaggtggcttcatcatggacggatgactca
atccggcagtgcctctatgtgtacctgtcgctgctgccgctcaaccacacgctcatccac
gagctggccgccgtctatacggaagccatcgcggacatcaagcgcaccattctgcgcatc
atcgagcagcccatccgtgggatgggcatgaactcaccggagttgctgctgctggtggag
agctgtcccaagggtgccgagacgctggtcacgcgcagcctgcatatccttaccgagaaa
gctccaccgtccccggagctggtgaaacgcgtgcgggacctctaccaaaagcgcgtgtcg
gacgttcgcttcctcatcccggtgctcaacggcctcgagaagaaagaggtgatcgcagca
ctgcccaagctcatcaagctgaaccccatcgtcgtgaaggaggtgttcaaccggttgctc
ggcacccagcacggcgagggtggagtggccatgtcgcctctcacaccgggagagttgctc
gtggcgctgcacaacattgacaccaccaaatgcgacatgaagtcaatcatcaaagccacg
agcctgtgctttgcggagcgctgggtctacagctccgaggtgctggcagtggtcatgcag
cagctgatggagcagaaccctctgcctgtgttgctcatgcgcaccgtcatacagtcgctg
tccatgtacccacgcatgggcgccttcgtcatgaacatcctgcagaggctcatcatcaag
caggtgtggaagcaccccaaggtgtgggagggcttcatcaagtgctgccaacgaaccaag
ccgcagtcgtttggcgtgctgctgcagctgccgcccgcgcaactcgccgtcgtcttcgac
aagtgtcccgagatacgagagccgctgctcatgcacgtgcgctcgctcaccccgcagcag
caaaaccacatttccaagtcgacgatagccgtcctagagatggggcccataatcaagatc
gagcaggaatctgagcacatcctaccagcccagggggaggcgcgccgcgcgatggacact
cacggcatccgtgacgacggctccctgccgtgctgggccaacccgcaccggccagaccta
cacccgcgagtcaacatgaacatgcaccctgcgcagcacgccccgcagcacgccccgcag
cacgcccacccgcacccccacncccacccccacctccagcacttgcagcccatgcagccc
atgcagcacctgaagctggcgcagctggctcaaatgcagcccggccacgcgccaaccccc
ggaggacgcgcggaaccgccgctcaggccggccgtgcacctcgagccacgccccgagagc
gtcgcgggcgcacagagccagccggagcctgagcactcgcgagccaacagcgcggtcaca
gtcgcctctgctgctgccgccgcctccgaagctaagccgtcggcggtgctggaaagggca
gaggtagccgacgcgacggccggcgcgggtgggcgatcgatgagcaaggaggacaaagcg
aaggcggatgtagagggggacagcgcgggtttgcgcccggaggaggtgaagccggcggca
cgggaaggtgcagccgaggtgcacgcagcgcagggtgtgccattcgcgcgtgtgatgccg
gcagggtccctaggtcggccagacccagcctcagatgcagcccaaaccccactcccccta
ggtttggttgtctcagacacccaaatctaa
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integrated database retrieval system
