Lethenteron reissneri (Far Eastern brook lamprey): 133356951
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Entry
133356951 CDS
T09663
Symbol
AFDN
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04517
IgSF CAM signaling
lrj04520
Adherens junction
lrj04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133356951 (AFDN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
133356951 (AFDN)
04530 Tight junction
133356951 (AFDN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RASSF8-10_RA
RA_3
Motif
Other DBs
NCBI-GeneID:
133356951
NCBI-ProteinID:
XP_061430646
LinkDB
All DBs
Position
56:3291772..3509237
Genome browser
AA seq
2149 aa
AA seq
DB search
MAMEEERRKLREIINHWNENRLDLFEISLPNEELEFHGVMRFYFQDKMSGNFATKCIRVS
STATTSDVVETLSEKFRPDIRMLTAPRYSLYEVHSSGEERRLGEHEKPLVVQLNWNKDDR
EGRFVLKNENDIAPVKKVERNGAGKAEKEGVMQNFKRTLSKKERKEKKRREREASSRCEE
DEENAPDVGAAPQADSAGVAEEVYKEMPETSFTRTISNPEVVMKRRRQQKLERRLQEFHG
DDGRPRSGGMLRVFADSLRPTIPYKTLLVSLSDPAEFVVREVLDKYGLEREDPANYCLAR
LVLPPDSDMMEEAVRREGLETALDDQDCPLNILVEWPAEDGVLVFQLRKKEDVAARRKKQ
QQQQHKGVVGKAAGEGQEERRRGGGGGGDAATGADAGSGHDAYGAAPPPDRLPYLVELSP
GGRHSHRSYRTPDGSDSRDKPKMYRLQLNVTEVGSDTSSPQFIQLFGAGIQPQHCVVTNM
EGVVTVTPSSVEADTFVQGRRISETTMLRSGCTLRFGRASVFKFVDPGHEPPGVSSGGVR
RAAEGETEPARATARSSSGPVPVPHETTFELDGDVHSNSDAHAKRQADGRSAMRPDRVEF
TKSELRGQEKPSQIIDLPATLELREGAEEAFLAGVVNYTNSTTAHFKLSPTYALYLAARR
TLGSPNTASASSASEEERLRRTVSLVNRMVAMMEAVIQDLKHHEQEQSGMASALAFWMAN
ASELLNFLKQDSELGRVTADGQDVLASGVHTAFRHLVHCLQSDLNKCMPAFLEDPEEPSA
QGPKIDDVLQTLSGAMSLLRRCRVNAALTIQLFSQLFHFVNMWLFNELARGAAARQPLCS
YYWGVALHERLHAVEGWAERQGLELAADCHLSRIMQATTLLTMDKYAPKDAPEISSTCFK
LNSLQLRALLEGYQGATGEPSIPRELIDSVVAMATSTADELAHSDMREVRLEEDPDLQLP
FLLPEDGYSCDIVKGVPHGLAEFLAPLCQRGLCRLVPLLRSPGVWTVFFEGHDNDSGPLL
PTDTGSLQHQVPKVLTVTLKKQHGLGLSIVAAKGAGLDKLGIYVKSVVKGGAADQDGRLA
AGDQLLSVDGNSLVGLSQERAAELMTRTGSVVTLEIAKQGAIYHGLATLLNEPSPTTQHR
GTDRRTGGKARPKSEGLELYRGAARPDSPEEPAETHTDAHQQQQQQEQQGGAVSHGDDRL
VKNRADHRSTPNVAHSPDSVGLRPVYPGAPASRVQSVSTGNLKAEESPSPPSLEAYPVPT
ATYARECSTLPPPPADSSPAWAASGMQRAAHSEEELRRDRPYRAAGPPPPPPHHHHGQQQ
AQRQQPPSSLLSSSSHEQSALSARAPQYGIAVGGAASAKTGPGRWKTPVVSGGGGGGGGQ
QGGGLPPPPPPTRYPPGYGPESRDLPPPPPPPPPASALHGMGGMSGGGTSSSLSSLSSPS
LPSPGYGGDAGPEAERKREEQLRWYEAEKARLEEERERQRRRKAAGAAAPGGGGGGGAGA
GSVVRPHERPAVPSQGDTIIRELRPQSQPRTIERHDLHFLVPPPAGTGEEESASGSPQLS
PSPWARDARERQEKQRQQQQLEMLEREIAALQSRPQHQLLPEESDRLRKLLLEREFQRRV
QEVSLRRRGGDDDDDDDDDYEERDDDEGGGGTRIGAQAAGQKQSVQEKPLPWQHQQTGDF
HQQQQQRHEEETHVLQAFPTLSVLHLLQDEERRKHQQQAEERARQQREADERARQQREAE
ERARQQREAEERARQQRDAEERARQQREAEERARQQRDAEERARQQREAEERARQQREAE
ERARQREADERAKQQREAEERTRQQREAEERTRQQREAEERTRKVEEQRRRDDDYYAHME
SERRRALDEEERRLLGPGNNNGGGGDDGTSTAAYAATTAAASPPAPSQQSKPRGGGGTGI
GGGIGGGIGGIGGGGDVVHRAMLVRCGDGEEEEDSAKTRDARTNPAAAAAAAPLRWQQQQ
PGGGGGAVTTRRPPLARPPRPVSDGFALSSAAGGAAGLGRQAPSVAASSSMADLARVGRG
AVGAAAAQQLRGTPASLLLTYASPGNSQGMNTYRPGGTPGVIGSQEVYRDPRERRTNQSK
PEAGERPSPMPEKLPFRERQRLFSQGQDVANKIKTSRKLMELEQELGNK
NT seq
6450 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggaggaggagagacgcaagctgagggaaatcatcaaccactggaacgagaac
agactcgacctcttcgagatcagtctacccaatgaggagctggagttccacggcgtgatg
cgcttctacttccaagacaagatgtcgggcaactttgccaccaagtgcatccgcgtgtcc
agcacggccaccacgtcggacgtggtggagacgttgagcgagaagtttcgcccggacatc
cgtatgctgacggcgccgcggtactccctctacgaggttcactccagcggagaggagcgg
cgcctgggggagcacgagaagccgctcgtcgtgcagctcaactggaacaaggacgaccgc
gaggggcgctttgtgctcaagaacgagaacgacatcgctcccgtcaagaaggtggagcgc
aacggtgccggcaaggcggagaaggagggcgtgatgcagaacttcaagcgcacgctgtcc
aagaaggagcgcaaggagaagaagaggcgggagagggaggcgtcgtcgcgctgcgaggag
gacgaggagaacgcccccgacgttggcgcagccccgcaggccgacagtgcgggcgtggcg
gaggaggtctacaaggagatgcccgagacgagcttcacgcgcaccatctccaaccccgag
gtcgtcatgaagcggcggcgccagcagaagctggagcgccgtctgcaggagttccacggg
gacgacgggcggccccgctccggcgggatgctgcgggtgtttgccgacagcctcaggccg
acgatcccctacaagacgctgctcgtgtctctgtcggaccccgccgagtttgtggtgcgc
gaggtgctggataagtacggcctggagcgggaagaccccgccaactattgcctggccagg
ctggtgctgccgcccgacagcgacatgatggaggaggcggtgcgacgcgaaggcctggaa
acggcgctagacgaccaggactgccctctcaacatcctggtggagtggcccgctgaggac
ggcgtgctggtcttccagctgcgcaagaaggaggacgtggcggcgcgacggaagaagcag
cagcagcagcagcacaagggggtggtgggcaaggctgccggggaggggcaggaggagcgc
cggcgtggtggcggtggcggcggcgacgcagccactggagccgacgccggctccgggcac
gacgcgtacggagcggcgccgccgcccgacaggctcccgtacctcgtggagctcagccct
ggcggtcgccacagccaccgctcttacaggactccagacggctcggactcgcgggacaag
cccaagatgtaccggctgcagctcaacgtgacggaggttggcagcgacacgtcgtcgccg
cagttcatccagctgtttggcgccggcatccagccgcagcactgcgtggtcaccaacatg
gagggcgtggtgacggtgacgccgagcagcgtggaggccgacaccttcgtgcagggacgc
cgcatctcggagaccaccatgctgcgcagcggctgcaccctgcgcttcggccgcgccagc
gtcttcaagttcgtggaccccggccacgagccgcccggagtctcctccggcggagtccgc
cgtgcggccgagggggagacggagccggcgcgcgccaccgccaggagcagtagtgggccc
gtgcccgtgccgcacgagaccacgtttgagctcgacggagacgtccacagcaactcggac
gcgcacgccaagcgtcaggccgatgggaggtctgcgatgcgaccggacagagtggaattt
accaagtcagagttacgcggccaagagaagccgtctcaaatcatcgatctgccggccacg
ctggagctgagagaaggagcggaggaggccttcctggcgggcgtggtgaactacaccaac
agcacgacggcgcacttcaagctgtcgcccacctacgcgctctacctggcggcgcgccgc
accctcggcagccccaacaccgccagcgcctcctccgccagcgaggaggagcgtctccgt
cgcaccgtgtctctcgtcaaccgcatggtcgccatgatggaggccgtcatccaggacctg
aagcaccacgagcaggagcagagcggcatggcgagcgcgctcgcgttctggatggccaac
gcctcggagctgctcaacttcctgaagcaggactctgagcttggccgcgtcaccgccgat
ggccaggacgtgctggcaagcggcgtgcacacggccttccggcacctggtccactgcctg
cagtcagatctcaacaagtgcatgccggccttcctggaggatccggaggagcccagcgcc
cagggccccaagatcgacgacgtgctgcagacgctgagcggcgccatgtccttgctgcgc
cggtgccgcgtgaacgcggcgctcaccatccagctcttctcgcagctcttccactttgtc
aacatgtggctcttcaacgagctggcgcggggcgctgcggctcgccagcccctctgctcc
tactactggggggtggcgctgcacgagcgcctgcacgccgtcgagggctgggccgagcgc
cagggcctcgagctcgccgccgactgccacctcagcaggatcatgcaggccacgaccctg
ctcacgatggacaagtacgcgcccaaggacgcgccggagatcagcagcacctgcttcaag
ctcaactcactgcagctgcgcgcactgctggagggataccagggcgccacgggggagccc
agcatccctcgcgaactgatcgacagcgtggttgccatggccaccagcactgctgacgag
ctggcgcacagcgatatgcgcgaggtgcgtctggaggaggacccggacctgcagctgccc
ttcttgctgcccgaggacggctactcgtgcgacatcgtcaagggggtgccacacggactc
gccgagttcctcgctccgctctgccagagaggtctttgtcgtctggtgccccttctacgc
tcaccgggagtgtggaccgtgttctttgagggtcacgacaacgacagtggccccctcctt
cccactgacacgggctcgctgcaacaccaggtgcccaaggtgctcaccgtcacgctcaag
aagcagcacggtctgggcctcagcatcgtcgccgccaagggtgccggtttggacaagctg
ggaatctacgtcaagtcggtggtcaaaggcggcgctgctgatcaggacgggcgtttggct
gctggggaccagctgctcagcgtcgatgggaacagcctcgtgggcctttctcaagagagg
gcggccgagctgatgacccgcaccggctcggtggtgacgctggagatcgccaagcaggga
gccatctaccacggcctagccaccctgctcaacgagccctcgcccaccacgcagcacaga
ggaacggaccgtcgcaccggtggcaaggcgaggcccaagagcgaggggctggagttgtac
cgcggcgcggcgcgtcccgacagcccggaagagccggcggagacccacaccgacgcccac
cagcagcagcagcagcaggagcagcagggcggcgcagtctctcacggcgacgaccggctc
gtgaagaaccgcgcagaccaccgctctacccccaacgtcgcgcactcccccgacagcgtg
ggtctccgccccgtgtacccgggcgctccggcctccagggtccagtcggtgtcgaccggc
aacctcaaggcagaggagagtccctctccgccgtcgctcgaggcctacccggtgcccaca
gccacctacgcacgcgagtgcagcacgctgccacccccgcccgcagacagctcccccgct
tgggcggcctccggcatgcagagagcggcgcactccgaggaggagctgcggcgagaccgc
ccctaccgtgcggcggggccgccgccgccaccgccacaccaccaccacgggcagcagcaa
gcgcagcgccagcagccgccctcctcgctcctatcctcctccagccacgagcagtcggcg
ctgtcggctcgcgcgccgcagtacggcatcgccgtgggcggcgccgcctccgccaagacg
gggccgggccgctggaagacgcccgtcgtcagcggtggcggcggcggcggcggtggccag
caaggaggcggcctccctccgccgccccctccgacgcggtacccgccggggtacggcccc
gagtcgcgggacctcccgccgccaccgccgcctccgccgccggcgtccgccctgcacggc
atgggcgggatgagcggcgggggcacgtcctcgtcgctgtcgtcgctttcgtcgccgtcg
ctgccgtcgcccggctatggcggcgacgcggggcccgaggcggagcgcaagcgcgaggag
cagctgcgctggtacgaggcggagaaggcgcggctggaggaggagcgcgagcgacagcgg
cgcaggaaagcggcgggggccgctgctcccggcggcggtggcggtggtggcgcgggcgcg
gggtcggtggtgagaccgcacgaaaggccggcggtgccgtcgcaaggagacacgatcatc
agggagctgcgcccccagtcgcagccgcgcaccatcgagcgccacgacctgcacttcctg
gtgcccccccccgcgggcaccggcgaggaggagagcgccagcggctccccgcagctgtcg
ccgtcgccgtgggcgcgcgacgcccgcgagcgccaggagaagcagcggcagcagcagcag
ctggagatgctggagcgggagatcgcggcgctgcagtcgcggccgcagcaccagctgctg
cccgaggagagcgaccggctgcgcaagctgctgctggagcgcgagtttcagcggcgcgtg
caggaggtgtcgctgcgccggcggggcggcgacgacgacgatgacgacgacgacgactac
gaagagagggacgacgacgagggaggtggaggcactaggatcggggcgcaggccgcaggg
cagaagcagtcggtgcaggaaaagcctctgccgtggcaacaccagcagacgggagacttc
caccagcagcagcagcaaaggcatgaggaggagacgcacgtgttgcaggccttcccgact
ctctcggtcttgcacttgctccaggacgaggagcgccggaagcatcagcagcaggcggag
gagcgtgcgcggcagcagagggaagcggatgagcgggcaaggcagcagcgagaagcggag
gagcgagcgaggcagcagcgagaagcggaggagcgagcgaggcagcagcgagacgcggag
gagcgagcgaggcagcagcgagaagcggaggagcgggcgaggcagcagcgagacgcggag
gagcgggcgaggcagcagcgagaagcggaggagcgagcgaggcagcagcgagaagccgag
gagcgagctcgacagagggaagcagacgaacgggcgaagcagcagcgggaagcagaggag
cggacgcggcagcagcgggaagcggaggagcggacgcggcagcagcgagaagcggaggag
cggacgcgcaaggtggaggagcagcggcgccgcgacgacgactactacgctcacatggag
tcggagcggcggcgcgcgctggacgaggaggagcgccgcctgctgggtcccggcaacaac
aacggcggcggcggcgacgacgggacatccacggcggcctacgccgccaccaccgccgcc
gcgtctccgccggcgccgtcccagcagagtaagcctcgcggcggaggcggaacgggcatc
ggcggcggcatcggcggaggcatcggcggcatcggcggaggcggcgacgtcgtgcacaga
gccatgctggtgcggtgcggtgacggcgaggaggaggaggactctgcaaagacgagagac
gctcgcactaaccccgcggcggcggcggcggccgcccccctgcgctggcagcagcagcag
ccgggcggcggcggcggcgccgtgacgacgcgccgaccgccgctcgcccggccgccgcgc
cccgtgtcggacggctttgcgctctcgtcggccgcggggggggcggccggcctgggcagg
caggcgccgtcggtggcggcttccagcagcatggccgacctggcgcgcgtcggccgcggc
gctgtcggcgccgcggcggcccagcagctccgcggcacgccggcctcgctgctgctcacc
tatgcttcgcctggaaactcgcaaggcatgaacacgtaccggcccggcgggacgcccggc
gtcatcggctcccaggaggtttaccgcgacccacgcgagcgtcgcaccaatcagagcaaa
ccagaggcgggcgagcgcccgagcccgatgcccgagaagctgccgttccgtgagcgccag
cgcctcttctcgcagggccaggacgtcgccaacaagatcaagacgtcgcgcaagctcatg
gagctcgagcaggagctgggaaacaaataa
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integrated database retrieval system
