Lethenteron reissneri (Far Eastern brook lamprey): 133357339
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Entry
133357339 CDS
T09663
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04382
Cornified envelope formation
lrj04510
Focal adhesion
lrj04512
ECM-receptor interaction
lrj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133357339
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133357339
09142 Cell motility
04820 Cytoskeleton in muscle cells
133357339
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133357339
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrj04147
]
133357339
00536 Glycosaminoglycan binding proteins [BR:
lrj00536
]
133357339
Exosome [BR:
lrj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133357339
Glycosaminoglycan binding proteins [BR:
lrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133357339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
133357339
NCBI-ProteinID:
XP_061431222
LinkDB
All DBs
Position
57:complement(1573759..1662985)
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AA seq
1691 aa
AA seq
DB search
MRPSGALQAPLVLLVLVALLRDCLGKACHGCSSGSSCDCSGAKGDKGASGLPGLQGPQGL
PGFSGPEGSPGPEGSKGDQGDMGHAGPKGFRGTPGTPGFPGTPGMPGLNGQDGPMGPPGI
PGCNGTKGDVGLPGNDGVPGLMGPRGIPGLPGLKGDPGDFLPAFPGQKGDSGLPGLPGNA
GYPGGAGLPGPIGPPGPPGFPGPSGQPGPPGPKGHMGLNFQGPKGDKGESGLQGPPGPPG
HIREQQGIVDITDGFQKGQTGDVGEPGKPGLDGQPGPPGRPGFGQKGEKGDFGEAGKRGK
PGKDGDSGLPGIDGEPGIPGIPGIDGLDGEKGLKGDAGIAGPPGKVVSVTGSSDVATAQK
GDIGFPGPPGDKGERGFPGPHGLQGTPGPPGPSSKGSPGIPGQPGTRGDKGLPGDPGPII
PGARGADGQPGRPGNPGIPGPPGPPATVPLDFGSTGRGIPGPPGQAGLPGTPGIAGTKGD
KGDTCRSCGQVPVRTLPGVPGPQGPPGAPGQPGIPGGSGPKGDGGFPGSPGLQGPSGSPG
VPGRPGDSGEKGEPGEASSLEGLAGDKGEPGSSGVPGSPGASGLPGLDGQPGSPGPKGDP
APFGFKGEQGPPGGAGMPGTPGERGPPGSPGFGPPGLPGQKGTDGIPGRAGMEGPTGGKG
EPGRTLGQPGFPGLPGSPGDVGPSGSPGMPGIPGTPGLQGEQGVKGDAGFPGFGMPGATG
QKGAVGVPGPSGGSGAAGRPGQDGTPGQPGPAGPKGESGVGAPGLRGPPGVPGQGGLPGA
KGEQGSPGLPGMPGRPGMDGVPGSRGEGGSPGIPGHQGLPGLKGFGQPGSPGLPGQPGPT
GKEGSPGIAGSKGDPGPPGLDLTGPPGDKGSPGFPGVPGQMGPPGPMGIPGKDGIPGYSG
AKGEMGVMGTPGPQGPVGQLGAPGLAGPTGNAGQPGPSGDEGQGGTKGDKGERGLPGSPM
TIADMQLLQGPKGEKGQEGNSGQAGQKGSPGPPGLPGNPGAEGLRGTDGSAGPKGNPGSD
GFSGQPGTPGQKGSMGEMGLPGPSGGVGNPGPPGKPGLPGSQGQLGLKGDKGNSGVPGIG
APGLTGVQGESGKPGQPGPPGLKGSTGLPGMPGAPGTDGPKGDAGISGLPGDSGREGPKG
QVGLSGSPGQPGPPGLPGIGGQPGFPGSPGEKGSIGRDGIPGTIGSRGDPGPPGLGTPGP
PGSPGHPGEKGDPGIPGHVGPPGMQGPKGVEGQKGFSGPPGQQGPAGAPGQVTDGAKGNT
GPAGLPGPPGPEGVTGFPGTPGVGGQKGEQGSPGSWGSSGFPGPPGESGPPGQLGAQGRP
GLDGTKGDPGSQGTPGFPGEKGVPGHPGTRGNPGETGPVGPIGPPGIAGTPGEVTVIKGD
PGQPGSVGFQGPKGPPGRQGDPGPKGFVGPDGPPGQDGFPGXDGSQGPKGNMGTSGDPGE
VGRPGPQGVDGMPGSRGQPGKASMPHGFLVTRHSQAKSVPSCPQGTEKVYDGYSLLYVQG
NERAHGQDLGTSGSCLRRFSTMPFVFCNLNNVCNFASRNDYSYWLSTPEPMPMSMAPITG
PHVEPFISRCSVCEASAMVIAVHSQSVTVPPCPEGWGSLWFGYSFMMHTSAGSEGSGQAL
ASPGSCLEEFRSTPFIECHGRGTCNYYANSFSFWLATIDGSNMFRKPQSETLKAGDLRSR
ISRCQVCMRRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgcggccatcgggcgcgcttcaggcgccgttggtgctgctcgttcttgtcgccctgtta
cgcgactgccttggcaaggcgtgccacggctgttcctcagggtcgtcatgtgactgcagt
ggagcgaagggagacaagggtgcatcaggcctcccaggcctgcagggacctcagggactt
ccaggattttcagggcccgagggctcacctgggccagagggcagcaagggcgaccaggga
gacatgggccacgctgggcccaagggcttcagggggacaccaggaaccccagggtttcca
gggacgccaggcatgccgggcctcaatggacaagacggccccatggggcctcccgggatc
ccaggatgcaatgggaccaagggagacgttgggctgcctggtaacgacggagtgcctggg
ttaatgggacctcggggaattcctggattgcctggattaaagggtgaccccggagatttt
ctgcctgcgttcccaggacaaaagggtgactcaggcctcccaggcctcccaggaaacgcc
ggctatcctggaggtgcagggctgccaggccccatcgggcccccaggccctcccggattt
ccaggaccgtcaggccagcctgggcctccaggacccaagggacacatgggactcaacttc
caaggccccaaaggagataagggggagtcagggctgcagggtccgccagggcctcccggc
cacatccgtgagcagcagggcatcgtcgacatcaccgacggcttccagaaggggcagacg
ggtgacgtgggcgagccaggcaaaccaggcctcgacggtcaacccgggcccccgggacga
ccgggctttggtcagaagggagagaaaggtgactttggagaagctggcaagagggggaag
ccaggaaaggatggggattcaggactgccaggaatcgatggagagcctggtatcccaggg
attcccggcattgacggcctggatggcgaaaagggtctgaagggagatgctggcatcgca
gggcctccgggaaaagtggtctcagtcaccggcagcagtgacgtcgccaccgcccagaaa
ggggacatcggattcccgggaccccccggggacaaaggggagcgcgggtttcccggtccc
cacggtctccagggcacgcctggacctccgggcccatcgtccaagggctctccaggcatc
ccaggccagcccgggactagaggggacaaaggccttccaggagacccaggccccatcatc
cctggagccaggggagcggatggacagccaggtcgccccggcaatccgggtatccccgga
ccacccgggcctcctgctacggtgcccctggactttggcagcactggcagaggtatccct
gggcctccgggacaagcggggcttcctggcactcctggcatcgccggcaccaaaggagac
aagggggacacgtgccggtcgtgcggtcaagtgccggtgaggactttgccgggcgtgccg
ggacctcaaggaccaccgggggcccccggtcagccagggattccgggcggcagtgggcct
aagggcgatggcggcttccctggctctcccggcttacagggaccttcgggcagcccaggg
gtgccgggccgccctggggactccggtgagaaaggggagccgggggaggcgtcctccctc
gaggggctcgccggggacaagggtgagcccggctcgtcgggggtgcccgggagtccgggg
gccagcggcctcccaggcctcgacgggcagcctggaagcccaggcccaaagggggacccg
gcaccgttcggattcaagggagagcagggccccccgggcggcgcggggatgccggggaca
cccggagagcgcggccccccaggatctccagggttcgggcccccggggcttccagggcag
aagggaaccgacggaattcctgggcgggccgggatggagggaccgaccggtggcaagggg
gaaccgggcaggactctgggccagccgggattccccggcttaccgggctctcctggggac
gtggggccctctggctccccaggcatgccggggatccccggcaccccgggactgcagggg
gagcagggggtgaagggcgacgccggcttccccgggttcggtatgccgggggcgaccggg
cagaaaggcgcggtgggcgtcccggggccttcgggagggtcgggcgcggcgggcaggccg
ggacaggacggcaccccagggcagccgggcccagcgggacccaagggggagtcgggcgtc
ggagcgccgggtctccggggaccaccgggggttccgggccagggcgggttgccgggcgcg
aagggggagcagggctccccggggctaccggggatgccgggccggcctggcatggacggc
gttcccggaagcaggggggaaggggggtctccgggcatccccgggcaccaggggcttccc
ggcctcaagggatttggacaacccggatcacctggtctccccggccaacctggtccgacc
ggcaaggaaggttctcctggcattgctgggagcaagggtgacccgggacctccgggcctc
gacctgaccgggcctcccggcgacaagggcagcccgggcttccctggcgtgccgggccag
atggggccgccgggtcccatgggcatcccggggaaagacgggattcctggatactcgggc
gccaagggggagatgggggtcatgggaactcctgggccccaaggccccgtggggcagctg
ggggctcctggcctcgctggccccacaggcaacgcgggtcagcccgggccgtcgggcgac
gagggacaaggaggcaccaaaggagacaagggggagcgaggacttcctgggagccccatg
accattgccgacatgcagctgctgcagggcccgaagggcgagaagggacaggaggggaat
tcgggtcaggccgggcagaagggatcaccgggacctccgggtttgccggggaaccccggc
gccgagggcctccgcggcacagacgggagcgcagggcccaaggggaacccgggttctgac
ggtttctcagggcagccaggcacacctggccagaagggctccatgggagagatgggcctc
ccaggacccagtgggggcgtggggaaccctggtccccctgggaagccaggtttgcctggc
agccaggggcagttgggactcaagggagacaaggggaactccggcgtgcctgggatagga
gctccagggctgaccggagttcagggagagtcgggaaagccgggtcagccagggcctcct
ggactcaaggggtccacgggcctaccggggatgcctggagctccggggacagatggcccc
aaaggagatgcgggcatcagtggcctcccaggagacagtggcagggagggtcccaaagga
caggttgggctctcaggcagccctggtcaaccgggcccccctgggcttccaggtatcgga
ggacagccggggtttcctggttctcctggcgagaagggctccatcggcagagacggaatc
cccggcaccatcggcagcagaggggatccagggcctcctggcctcgggacgcctgggcca
cccggttcacctggacaccccggcgagaagggcgaccccggcattcctggccacgtcggc
ccacccgggatgcagggccccaagggcgtagagggacagaagggattctctgggccaccg
ggccagcagggccctgcgggcgctccgggccaggtcaccgacggtgccaaggggaacacc
gggccggccggactgcctgggcctcccggccccgagggggtgactggcttcccagggacg
cctggagtcggggggcagaagggcgagcaaggcagccccggcagttggggctcctccggg
ttcccggggccccccggcgagtcgggcccccccggccagctgggagcccaggggcggccc
ggcctggacggaacaaagggagacccgggaagccaagggactccgggatttccaggagag
aagggcgtcccgggacatcctggaacgcgtggaaaccccggggagacgggaccggtcggg
cccattggtcctcccggaatcgctggaacacctggagaggtcaccgtcatcaagggagac
ccggggcagccaggatcagttgggttccaaggtcccaagggacctcctggtcgtcaagga
gaccctggccctaaaggcttcgtgggccccgacgggccgcctggccaggacgggttccct
ggantcgacgggagccaggggcctaaaggcaacatggggacttcaggcgacccgggcgag
gtgggtcgtcccgggccgcagggcgtggacgggatgcccggctcgaggggccaacccggc
aaggcctccatgccgcacggcttcctggtgacgaggcacagccaggccaaaagcgtgccc
agctgcccccagggcaccgagaaggtctacgacggatactcgctgctctacgtgcagggc
aacgaacgcgcgcacggacaggacctgggcacgtcgggcagctgcctgcgccgattcagc
acgatgcccttcgtcttctgcaacctgaacaacgtgtgcaacttcgcgtcgcgcaacgac
tactcctactggctgtccacgcccgagcccatgcccatgagcatggcccccatcacgggg
ccccacgtggagcccttcatcagcaggtgctcggtgtgcgaggcatcggccatggtgatc
gccgtgcacagccagtccgtcacggtgccaccgtgtcccgagggatggggttccctgtgg
ttcggctactccttcatgatgcacacgagcgccgggtcggagggctcgggacaggcgttg
gcctcgccggggtcgtgcctggaggagttccgctcgactcccttcatcgagtgccacgga
cgcggcacctgcaactactacgccaactcctttagcttctggctcgccaccatcgatggc
agcaacatgttccggaaaccgcagtcggagaccctcaaggccggcgacctgcggtcacgc
atcagccgctgccaggtgtgcatgcgacgcacgtag
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