Lethenteron reissneri (Far Eastern brook lamprey): 133357339
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Entry
133357339 CDS
T09663
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04510
Focal adhesion
lrj04512
ECM-receptor interaction
lrj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133357339
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133357339
09142 Cell motility
04820 Cytoskeleton in muscle cells
133357339
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrj04147
]
133357339
00536 Glycosaminoglycan binding proteins [BR:
lrj00536
]
133357339
Exosome [BR:
lrj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133357339
Glycosaminoglycan binding proteins [BR:
lrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133357339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
133357339
NCBI-ProteinID:
XP_061431222
LinkDB
All DBs
Position
57:complement(1573759..1662985)
Genome browser
AA seq
1691 aa
AA seq
DB search
MRPSGALQAPLVLLVLVALLRDCLGKACHGCSSGSSCDCSGAKGDKGASGLPGLQGPQGL
PGFSGPEGSPGPEGSKGDQGDMGHAGPKGFRGTPGTPGFPGTPGMPGLNGQDGPMGPPGI
PGCNGTKGDVGLPGNDGVPGLMGPRGIPGLPGLKGDPGDFLPAFPGQKGDSGLPGLPGNA
GYPGGAGLPGPIGPPGPPGFPGPSGQPGPPGPKGHMGLNFQGPKGDKGESGLQGPPGPPG
HIREQQGIVDITDGFQKGQTGDVGEPGKPGLDGQPGPPGRPGFGQKGEKGDFGEAGKRGK
PGKDGDSGLPGIDGEPGIPGIPGIDGLDGEKGLKGDAGIAGPPGKVVSVTGSSDVATAQK
GDIGFPGPPGDKGERGFPGPHGLQGTPGPPGPSSKGSPGIPGQPGTRGDKGLPGDPGPII
PGARGADGQPGRPGNPGIPGPPGPPATVPLDFGSTGRGIPGPPGQAGLPGTPGIAGTKGD
KGDTCRSCGQVPVRTLPGVPGPQGPPGAPGQPGIPGGSGPKGDGGFPGSPGLQGPSGSPG
VPGRPGDSGEKGEPGEASSLEGLAGDKGEPGSSGVPGSPGASGLPGLDGQPGSPGPKGDP
APFGFKGEQGPPGGAGMPGTPGERGPPGSPGFGPPGLPGQKGTDGIPGRAGMEGPTGGKG
EPGRTLGQPGFPGLPGSPGDVGPSGSPGMPGIPGTPGLQGEQGVKGDAGFPGFGMPGATG
QKGAVGVPGPSGGSGAAGRPGQDGTPGQPGPAGPKGESGVGAPGLRGPPGVPGQGGLPGA
KGEQGSPGLPGMPGRPGMDGVPGSRGEGGSPGIPGHQGLPGLKGFGQPGSPGLPGQPGPT
GKEGSPGIAGSKGDPGPPGLDLTGPPGDKGSPGFPGVPGQMGPPGPMGIPGKDGIPGYSG
AKGEMGVMGTPGPQGPVGQLGAPGLAGPTGNAGQPGPSGDEGQGGTKGDKGERGLPGSPM
TIADMQLLQGPKGEKGQEGNSGQAGQKGSPGPPGLPGNPGAEGLRGTDGSAGPKGNPGSD
GFSGQPGTPGQKGSMGEMGLPGPSGGVGNPGPPGKPGLPGSQGQLGLKGDKGNSGVPGIG
APGLTGVQGESGKPGQPGPPGLKGSTGLPGMPGAPGTDGPKGDAGISGLPGDSGREGPKG
QVGLSGSPGQPGPPGLPGIGGQPGFPGSPGEKGSIGRDGIPGTIGSRGDPGPPGLGTPGP
PGSPGHPGEKGDPGIPGHVGPPGMQGPKGVEGQKGFSGPPGQQGPAGAPGQVTDGAKGNT
GPAGLPGPPGPEGVTGFPGTPGVGGQKGEQGSPGSWGSSGFPGPPGESGPPGQLGAQGRP
GLDGTKGDPGSQGTPGFPGEKGVPGHPGTRGNPGETGPVGPIGPPGIAGTPGEVTVIKGD
PGQPGSVGFQGPKGPPGRQGDPGPKGFVGPDGPPGQDGFPGXDGSQGPKGNMGTSGDPGE
VGRPGPQGVDGMPGSRGQPGKASMPHGFLVTRHSQAKSVPSCPQGTEKVYDGYSLLYVQG
NERAHGQDLGTSGSCLRRFSTMPFVFCNLNNVCNFASRNDYSYWLSTPEPMPMSMAPITG
PHVEPFISRCSVCEASAMVIAVHSQSVTVPPCPEGWGSLWFGYSFMMHTSAGSEGSGQAL
ASPGSCLEEFRSTPFIECHGRGTCNYYANSFSFWLATIDGSNMFRKPQSETLKAGDLRSR
ISRCQVCMRRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgcggccatcgggcgcgcttcaggcgccgttggtgctgctcgttcttgtcgccctgtta
cgcgactgccttggcaaggcgtgccacggctgttcctcagggtcgtcatgtgactgcagt
ggagcgaagggagacaagggtgcatcaggcctcccaggcctgcagggacctcagggactt
ccaggattttcagggcccgagggctcacctgggccagagggcagcaagggcgaccaggga
gacatgggccacgctgggcccaagggcttcagggggacaccaggaaccccagggtttcca
gggacgccaggcatgccgggcctcaatggacaagacggccccatggggcctcccgggatc
ccaggatgcaatgggaccaagggagacgttgggctgcctggtaacgacggagtgcctggg
ttaatgggacctcggggaattcctggattgcctggattaaagggtgaccccggagatttt
ctgcctgcgttcccaggacaaaagggtgactcaggcctcccaggcctcccaggaaacgcc
ggctatcctggaggtgcagggctgccaggccccatcgggcccccaggccctcccggattt
ccaggaccgtcaggccagcctgggcctccaggacccaagggacacatgggactcaacttc
caaggccccaaaggagataagggggagtcagggctgcagggtccgccagggcctcccggc
cacatccgtgagcagcagggcatcgtcgacatcaccgacggcttccagaaggggcagacg
ggtgacgtgggcgagccaggcaaaccaggcctcgacggtcaacccgggcccccgggacga
ccgggctttggtcagaagggagagaaaggtgactttggagaagctggcaagagggggaag
ccaggaaaggatggggattcaggactgccaggaatcgatggagagcctggtatcccaggg
attcccggcattgacggcctggatggcgaaaagggtctgaagggagatgctggcatcgca
gggcctccgggaaaagtggtctcagtcaccggcagcagtgacgtcgccaccgcccagaaa
ggggacatcggattcccgggaccccccggggacaaaggggagcgcgggtttcccggtccc
cacggtctccagggcacgcctggacctccgggcccatcgtccaagggctctccaggcatc
ccaggccagcccgggactagaggggacaaaggccttccaggagacccaggccccatcatc
cctggagccaggggagcggatggacagccaggtcgccccggcaatccgggtatccccgga
ccacccgggcctcctgctacggtgcccctggactttggcagcactggcagaggtatccct
gggcctccgggacaagcggggcttcctggcactcctggcatcgccggcaccaaaggagac
aagggggacacgtgccggtcgtgcggtcaagtgccggtgaggactttgccgggcgtgccg
ggacctcaaggaccaccgggggcccccggtcagccagggattccgggcggcagtgggcct
aagggcgatggcggcttccctggctctcccggcttacagggaccttcgggcagcccaggg
gtgccgggccgccctggggactccggtgagaaaggggagccgggggaggcgtcctccctc
gaggggctcgccggggacaagggtgagcccggctcgtcgggggtgcccgggagtccgggg
gccagcggcctcccaggcctcgacgggcagcctggaagcccaggcccaaagggggacccg
gcaccgttcggattcaagggagagcagggccccccgggcggcgcggggatgccggggaca
cccggagagcgcggccccccaggatctccagggttcgggcccccggggcttccagggcag
aagggaaccgacggaattcctgggcgggccgggatggagggaccgaccggtggcaagggg
gaaccgggcaggactctgggccagccgggattccccggcttaccgggctctcctggggac
gtggggccctctggctccccaggcatgccggggatccccggcaccccgggactgcagggg
gagcagggggtgaagggcgacgccggcttccccgggttcggtatgccgggggcgaccggg
cagaaaggcgcggtgggcgtcccggggccttcgggagggtcgggcgcggcgggcaggccg
ggacaggacggcaccccagggcagccgggcccagcgggacccaagggggagtcgggcgtc
ggagcgccgggtctccggggaccaccgggggttccgggccagggcgggttgccgggcgcg
aagggggagcagggctccccggggctaccggggatgccgggccggcctggcatggacggc
gttcccggaagcaggggggaaggggggtctccgggcatccccgggcaccaggggcttccc
ggcctcaagggatttggacaacccggatcacctggtctccccggccaacctggtccgacc
ggcaaggaaggttctcctggcattgctgggagcaagggtgacccgggacctccgggcctc
gacctgaccgggcctcccggcgacaagggcagcccgggcttccctggcgtgccgggccag
atggggccgccgggtcccatgggcatcccggggaaagacgggattcctggatactcgggc
gccaagggggagatgggggtcatgggaactcctgggccccaaggccccgtggggcagctg
ggggctcctggcctcgctggccccacaggcaacgcgggtcagcccgggccgtcgggcgac
gagggacaaggaggcaccaaaggagacaagggggagcgaggacttcctgggagccccatg
accattgccgacatgcagctgctgcagggcccgaagggcgagaagggacaggaggggaat
tcgggtcaggccgggcagaagggatcaccgggacctccgggtttgccggggaaccccggc
gccgagggcctccgcggcacagacgggagcgcagggcccaaggggaacccgggttctgac
ggtttctcagggcagccaggcacacctggccagaagggctccatgggagagatgggcctc
ccaggacccagtgggggcgtggggaaccctggtccccctgggaagccaggtttgcctggc
agccaggggcagttgggactcaagggagacaaggggaactccggcgtgcctgggatagga
gctccagggctgaccggagttcagggagagtcgggaaagccgggtcagccagggcctcct
ggactcaaggggtccacgggcctaccggggatgcctggagctccggggacagatggcccc
aaaggagatgcgggcatcagtggcctcccaggagacagtggcagggagggtcccaaagga
caggttgggctctcaggcagccctggtcaaccgggcccccctgggcttccaggtatcgga
ggacagccggggtttcctggttctcctggcgagaagggctccatcggcagagacggaatc
cccggcaccatcggcagcagaggggatccagggcctcctggcctcgggacgcctgggcca
cccggttcacctggacaccccggcgagaagggcgaccccggcattcctggccacgtcggc
ccacccgggatgcagggccccaagggcgtagagggacagaagggattctctgggccaccg
ggccagcagggccctgcgggcgctccgggccaggtcaccgacggtgccaaggggaacacc
gggccggccggactgcctgggcctcccggccccgagggggtgactggcttcccagggacg
cctggagtcggggggcagaagggcgagcaaggcagccccggcagttggggctcctccggg
ttcccggggccccccggcgagtcgggcccccccggccagctgggagcccaggggcggccc
ggcctggacggaacaaagggagacccgggaagccaagggactccgggatttccaggagag
aagggcgtcccgggacatcctggaacgcgtggaaaccccggggagacgggaccggtcggg
cccattggtcctcccggaatcgctggaacacctggagaggtcaccgtcatcaagggagac
ccggggcagccaggatcagttgggttccaaggtcccaagggacctcctggtcgtcaagga
gaccctggccctaaaggcttcgtgggccccgacgggccgcctggccaggacgggttccct
ggantcgacgggagccaggggcctaaaggcaacatggggacttcaggcgacccgggcgag
gtgggtcgtcccgggccgcagggcgtggacgggatgcccggctcgaggggccaacccggc
aaggcctccatgccgcacggcttcctggtgacgaggcacagccaggccaaaagcgtgccc
agctgcccccagggcaccgagaaggtctacgacggatactcgctgctctacgtgcagggc
aacgaacgcgcgcacggacaggacctgggcacgtcgggcagctgcctgcgccgattcagc
acgatgcccttcgtcttctgcaacctgaacaacgtgtgcaacttcgcgtcgcgcaacgac
tactcctactggctgtccacgcccgagcccatgcccatgagcatggcccccatcacgggg
ccccacgtggagcccttcatcagcaggtgctcggtgtgcgaggcatcggccatggtgatc
gccgtgcacagccagtccgtcacggtgccaccgtgtcccgagggatggggttccctgtgg
ttcggctactccttcatgatgcacacgagcgccgggtcggagggctcgggacaggcgttg
gcctcgccggggtcgtgcctggaggagttccgctcgactcccttcatcgagtgccacgga
cgcggcacctgcaactactacgccaactcctttagcttctggctcgccaccatcgatggc
agcaacatgttccggaaaccgcagtcggagaccctcaaggccggcgacctgcggtcacgc
atcagccgctgccaggtgtgcatgcgacgcacgtag
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