Lethenteron reissneri (Far Eastern brook lamprey): 133357479
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Entry
133357479 CDS
T09663
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04510
Focal adhesion
lrj04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133357479
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133357479
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lrj00536
]
133357479
Glycosaminoglycan binding proteins [BR:
lrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133357479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
133357479
NCBI-ProteinID:
XP_061431415
LinkDB
All DBs
Position
7:complement(10109278..10180370)
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AA seq
1489 aa
AA seq
DB search
MSIMLAARNLLLLLIAAQALLVTVVKCQDDLSEDGSCVQDGQRYSDKDVWKPQPCSICVC
DSGSILCDDIVCEPLYDCPKTEIPFGECCPVCASNQPSSGPSRVRGQKGEPGEVPEIQGL
RGPSGPQGPPGEQGPRGNRGDKGEKGTLGPRGRDGEPGTPGNPGAAGPPGPPGPPGLGGN
FAAQMAGGFDEKSGGAQLGALQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEPGETGAAGP
LGPRGPPGPAGKPGDDGDAGKPGKSGERGPAGPQGARGFPGTPGLPGVKGHRGYPGLNGA
RGEDGAAGAKGENGAAGENGAPGPMGPRGLPGERGRPGPAGPAGARGSDGQAGAAGPPGP
TGPAGSPGFPGAPGTKGEAGPTGARGPEGAQGARGEGGAPGSSGPSGAPGNPGTDGLPGS
KGSSGAPGIAGAPGFPGPRGAPGPQGATGPSGPKGQQGEPGAHGFKGEAGPKGEIGPAGL
QGPPGQAGEEGKRGARGEPGAAGPNGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGP
AGPKGANGDPGRPGEAGLPGARGLTGSPGSPGAEGKLGPQGAPGEDGRPGPPGPQGARGQ
PGVMGFPGPKGAGGEPGKPGEKGIPGAPGLRGLPGKDGETGAQGPPGPAGPAGERGEGGP
PGPPGFQGLPGPSGPPGEAGKPGAQGVPGEAGKVGVSGARGERGFPGERGAPGPQGLQGA
RGLPGTPGTDGPKGATGPGGPPGAQGPPGLQGMPGERGATGISGAKGDRGDSGEKGPEGA
PGKDGGRGVTGPIGPPGPAGAHGDKGDAGPAGPTGPSGARGAPGERGETGPPGPAGFAGP
PGSDGQPGAKGEQGETGQKGDAGAPGPQGPSGAPGPQGPNGVSGPKGARGAQGPPGATGF
PGAAGRVGPPGPNGNPGSPGPAGPNGKDGPKGIRGDSGPVGRAGEPGLQGPIGAPGEKGD
AGEDGPSGPDGPPGAQGLSGQRGIVGLPGQRGERGFPGLPGPAGEPGKQGSTGASGERGP
PGPVGPPGLSGPPGEQGREGNAGSDGAPGRDGAAGAKGERGEAGAAGSPGAPGSTGSPGP
VGPTGKNGGRGDQGPQGPMGPPGPSGARGLPGPQGPRGDKGETGEAGERGLKGHRGFTGL
QGLPGPPGSSGDQGLAGSVGPSGPRGLSGPTGPPGKDGNNGQSGPIGPPGPRGRTGETGP
AGPSGPAGLPGPPGPPGPGIDLSAIAGIGQTDKAPDPLRYYRSDQALPELRQHDAEVDAS
IKSLSGQIEGLRSPEGTRKNPARTCRDLKLCHPEWESGNYWIDPNQGCTLDALKVFCNME
TGETCVYANPQTISRKNWWQSKSADRKHVWFGEAMSGGLHFNYGDDNLPANTAAIQMTFL
RLLSMEASQNITYHCKNSIAYMDEETGNLKKALLLQGSNDMEIRAEGNSRFTYNVLEDSC
TKHTGEWGRTVVEYRTQKTSRLPFVDVAPMDVGGPDQEFGLDIGPVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcatgttggctgcaaggaatctgctgctgctgctgatcgcggcacaagcgcta
ctggtgaccgtggtgaaatgtcaagatgacctcagcgaggatggcagctgtgtgcaggac
gggcaacgctacagcgacaaggacgtgtggaagccgcagccctgcagcatctgtgtctgc
gacagtggcagcatcctgtgcgatgacatagtctgcgagccgctctatgactgccccaaa
acggagattccctttggggagtgctgtcctgtctgcgcgtccaatcagccctcatccggg
ccgtcaagagtaaggggacaaaagggtgagccaggagaagtgcctgaaatacaaggtctc
agaggaccctcgggaccacagggaccacctggtgagcagggaccgagaggaaaccgagga
gacaagggagaaaagggaactctggggcctcgcggcagggatggcgaacccggaacaccc
ggaaacccaggagcagcaggcccgcccggtcccccaggaccacccggacttggagggaac
tttgccgctcagatggcaggtggctttgatgagaagtctggtggcgctcagctcggagct
ctgcaaggccccatgggacctatgggaccaagaggacctcccggaccatccggatcccct
ggccctcaaggattccaaggatctcctggcgaacccggagagactggcgccgctggccct
ctgggaccaaggggtccacctggcccagctgggaaacctggtgacgatggcgatgctggg
aaacctggaaagtctggcgagcgtggtcccgcaggtccacagggtgcaagaggtttcccc
gggacgcccggtcttccaggtgtcaagggtcaccgaggttaccctgggttgaacggagcc
aggggtgaggatggagctgctggagccaagggcgagaatggagctgcgggagagaatgga
gcacctgggcccatgggtccccgtggtctgcccggcgagaggggccgcccaggacccgct
ggacctgccggcgctcgtggatctgatggtcaagccggagctgctggcccccctggccca
actggacccgctggatctcctggcttcccaggtgctcccggaacgaagggagaggcaggc
cccactggagcaagaggacccgaaggagcacaaggtgcccgaggagaaggaggcgccccc
ggctcttccggacccagcggagctcccggaaaccctggtactgatggtctcccaggctcc
aaaggatcatctggtgctcctggtattgctggtgcaccaggtttcccaggaccacgtggc
gctccaggcccacagggggcgactggaccatctgggcctaaaggtcaacagggtgaacca
ggtgctcatggtttcaagggtgaggctggacccaagggagagattggaccagccggtctc
caaggacctcctggccaggcgggagaggaaggcaagaggggagcacgtggagaacccgga
gcagctggtcctaacggtcctcccggcgagagaggagctcctggcaaccgtggattccca
ggccaagatggacttgctggaccaaagggtgcacctggcgagagaggaccatcgggtcct
gctgggccaaagggggccaacggagaccccggccgacctggagaggctggcctacccggt
gcccgtggtctgactggcagtccaggtagcccaggggctgaaggaaagctgggccctcag
ggtgctccaggtgaggatggacgacctggcccacctggcccccagggtgctcgcggccag
cccggagtcatgggcttccccggaccgaagggcgctggcggagagcctggcaagcctgga
gagaagggaatccccggtgcccctgggctcaggggcctgccaggaaaggatggcgagact
ggcgctcagggtcctcctggccccgctggcccagccggtgagcgaggtgaaggtggccca
cctggacctcctggcttccagggtcttcccggacctagcggtcccccaggagaggctggc
aaaccaggtgctcagggtgtcccaggtgaagcgggcaaggttggagtttcaggtgcaagg
ggtgagcgcggcttccccggtgagcgaggagctccaggacctcagggtctgcagggcgca
cgaggccttcccggaactcccggcaccgacggtcccaagggtgcgacaggtcccggcggc
cccccaggagcacagggcccaccaggccttcagggcatgccgggcgagcggggagcgacg
ggcatttccggcgccaagggagacaggggagattctggcgagaaggggccggagggcgct
cccggcaaggacggaggcaggggtgtgaccgggcctattggaccacctgggccagccggt
gctcacggtgacaagggtgatgctggtcctgctggaccaactggaccatctggagcccgt
ggggcacccggagagcgtggagagactgggccacctggacctgccggctttgctgggcct
cctggctcagacgggcagcccggtgccaagggagagcagggcgagaccggacagaaggga
gatgctggcgccccaggtccccaggggccatcaggtgctcccggcccccagggtcctaat
ggcgtttctggtccaaaaggtgcccgaggtgctcaaggtccccctggagcgactggcttc
cctggagcagctggcagagtcggacccccaggtcccaatggtaacccaggatcccctggc
ccagctggccccaacggaaaggacgggcccaagggcattcgtggtgactcaggccccgtg
ggccgcgccggcgaaccagggcttcaagggccgatcggcgcgcctggagagaagggagat
gccggagaggacggcccatctggtccagacggcccccctggtgcccagggtctttcgggc
cagcgaggtattgtgggtctgcccggtcagcgcggtgagaggggattccctggtcttccc
ggacctgcgggagagcctggcaagcagggttcgacgggagcatctggagagaggggccca
cctggcccagtcggcccacctggtctgagcggtccacctggagagcaaggacgtgaagga
aacgctggttctgatggagccccaggtcgcgatggtgccgctggagccaagggcgagcga
ggggaggcaggagcggccggcagccctggagcacccgggtcaaccggatcacctggcccc
gttggtcccaccggcaaaaatggcggccgaggagatcagggccctcaaggtcccatgggt
ccacctggtccttctggtgcccgcggactgccgggcccacaaggtccccggggagacaag
ggtgagacaggagaggctggagagaggggcctcaagggacaccgaggattcaccggcctt
cagggactccccggcccaccgggttcttcaggtgaccagggtctcgcaggcagcgttggt
ccatctggtcccagaggtctttctggcccaaccggccctccaggaaaggatggaaacaac
ggccagtcaggccccatcggtcctccaggtcctcgcggtcgcactggcgaaactggccct
gcgggtccttctggtccagccggtctcccaggtccccccggcccacccggcccaggcatc
gacctctccgccattgctggcatcggccagaccgataaggccccagatcccctgcgctac
taccgcagcgaccaggccttgcccgagctgaggcagcacgacgccgaggtggacgcctcc
atcaagtctctgagcgggcagatcgaggggctgcggagtcccgagggcacccgcaagaac
ccggcgcgcacctgccgtgacctaaaactctgccaccccgaatgggagagcggaaactac
tggatcgaccccaaccagggctgcactctggatgccctgaaggtgttctgcaacatggag
accggcgagacgtgcgtgtacgccaacccacagaccatctcccgcaagaactggtggcag
agcaagagcgccgaccgcaagcatgtctggtttggcgaggccatgagcggaggcttacac
ttcaactacggcgatgacaacctgccagccaacacggccgccatccagatgaccttcctg
cggctgctgtccatggaggcatcgcagaacatcacgtaccactgcaagaacagcatcgcc
tacatggacgaggagacgggcaacctcaagaaggcgctgctgttgcagggctccaacgac
atggagatccgcgcggagggcaactcacgcttcacctacaacgtgctggaggacagctgc
acgaaacacacaggggagtggggcaggacggtcgtcgagtaccgtacgcagaagacctcg
cggctgccgtttgtcgacgttgctccaatggacgtcggcggccctgaccaggagtttggc
ctggacatcgggcccgtctgtttcctgtaa
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