Lethenteron reissneri (Far Eastern brook lamprey): 133357743
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Entry
133357743 CDS
T09663
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133357743 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrj03021
]
133357743 (PCF11)
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133357743 (PCF11)
Transcription machinery [BR:
lrj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133357743 (PCF11)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
133357743 (PCF11)
BRITE hierarchy
Motif
Pfam:
Pcf11_helical
CFIA_Pcf11
CID
DUF4763
Motif
Other DBs
NCBI-GeneID:
133357743
NCBI-ProteinID:
XP_061431823
LinkDB
All DBs
Position
59:1018911..1042272
Genome browser
AA seq
2070 aa
AA seq
DB search
MAEDVCEEYKSSLEDLTFNSKPHINMLTILAEENLPFASQIVKIIEAQIAKAPAGERLPV
LYLMDSIIKNVAQDYLAFFSHNIVTTFTCTFEKVDENTRKNMFKLRSTWDQILPPKKLHS
LDVHVNKIDPAWPIRPPPASANTGSIHVNPKFVTKLPEEPNPPEAAEVMRQQLLAKQKQL
LELQQKKLELELEQTKAKLEASLSGNIPGAPRPLVGHRPPSVPVQEIKPQPAAPLSHSQL
TTSAGGVPAARHGTATVMVHPGRDPRTNRDPRMNRDPRLQMTQQHHEQQQLALMEDQVSD
AKETSPVPAAPSRSSPCRATPSPAPRAEGGSPPEVAAAPARPAAGARSSPASKPVDKRHE
APAKAAGKRSDGKDPPFGGERKKEPSSGGDRKKGGDAPDPKKMGDASGKDGRKAPRDSAR
ASAKPRDRSPPPRRSSPSSRRRGRRSPPAWAPGSGRRKTSSPLPASHGGGARHKSPTPPP
AGPAVAAGAAAATSAAATALPRATDKRRASQSPAKAADWPTKRRNLDSPLRATGSDAGAG
GSGRRKGGSPGAPSRSRARERGERGERERGEGVRGSRSPMTEGRLPTKRRRSQSPRSPRG
PAAAAAPSGAGSKKTTPERVPLQANLPARGPHGKAGWAPAARGAGCAPHPRHGPEWRRNN
KRGSGGGGGGGGVVAGGGGGGARDKPPEVEKEPEYLGSPQFSPEPPPSEPDTPNAGEAPH
LHKRFRRSAWEQFKGIRTGQENQPQQQQRRDSWGAGVSVHRRFPFPRTPTQHHPRPSTDP
ELHIPKEITQANKHELLRKADMQRESGLITNEQHMQMVHQLNQLFKLRPRGDSGPRPLLS
EADMAYYQHKASLKQQGKRPPGVHPMAPHGEQQPCDGPRSLQTPPPPLRSLADGPWHGPH
AAESSAFDKRPGKQPVPLPASPGGVSRKPLLMTPTLGRRPPLLGPSPNLRRGGPQPPPPP
PVPVAATAAAAPAAATAVAGGASTAVAAAAAGADEAAVKREDEERGPADEGSRARRERVE
LPREGSAGPQGPEPPRVRGGQRGEWGGGPRRVGTPPEHWVPPREVGERRGKFEKLPGPGV
EELRARRSRDPSPAVDAPYASPHGRPFDGADGFGQRGGAGGGGFNNNSSSNNKDNDPPGW
WRDEPRSPQRDDELPPRRFDGPPHPPGRPDGPVDRFSDGPPERFADGPPLGRFPDRPGSR
FDGPQGPVFDGGQRFDGPALDGPNFDGPQGSRFDGPQGGPRFDGPQGGHRFDGPQGGHRF
DGPQGGHRFDGPQGGPRFDGPQGPRFDGPQGPRFDGPQGPRFDGPQGPRFDGPQGPRFDG
PQGPRFDGPQGPRFDGPQGPRFEGPQGPRFEGPQGPRFDGPQGMRFDGPQGPRFDGPQGV
RFDGPQGPRFDGPQGMRFDGPQGPRFDGPQGVRFEGPQGMRFDGPQGPRFDGPQGMRFEG
PQGMRFDGPQGMRFEGPQGPRFDGPQGVRFDGPQVPRFEGPQGVRFEGHRFEGPRMLHFE
GPQSHPGPRFDGPSVPRFDGPGGAGAQFGGQQQQQQRQQQAAFEGPHGGQRFDGGPQFVT
QQPGHQTGPFGFPPGSHLQGMAMGPNDHHMGNLGMGIPQHGQQLMGMGPRPHFGPGAGQP
FMPASQVQVAMMSQALQHGAMIRGPMQQQHQQQLMQHQHRMSMGLMGSDNHIGQVDVNSL
FSKLVASGILQVQTTTTPGTADDARNESNARVTEGAAKKAEEASKEDEEVDEEEEEDDDV
DMPDLSGFAIEDLKQRYDGVVQRLYSGIQCYSCGMRFTARQTDVYADHLDWHYRMNRMDK
DLSKKVTHRRWYYSLVDWIEFEEIADLEERAKSQFFEQVQEEVVLKTQEATREKEFLSVP
AGPAGVEELCEICREQFEQYWDEDEEEWHLKNAVRVDSRTFHPTCYEDHKDSSFDLTPTP
TTSMQENPLECALSDAREPGVVDNDGAADAVHSASLVACGSQDSALGSSLEISPSDSAPQ
DAAPSRESRPTGVAVEAGGDAVSAPDGADGGSDRAGERPADAAEAAGNAAVTAASTTAGT
ATAATASPSPPGGTEVSVRPADVQVKMEME
NT seq
6213 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggacgtgtgcgaggagtacaagtcgtcgctggaagacttgacctttaacagc
aagccgcatatcaacatgctgaccatcctggcggaggagaatctccctttcgcgtcgcaa
atcgtcaagattattgaagcgcaaatagccaaggcaccagcaggggagcgccttcccgtg
ctctacctcatggactccatcatcaagaacgtggcccaggattaccttgcgttcttttcg
cacaacattgtgacgacgtttacttgcacttttgaaaaggtggatgagaacacgcgcaag
aacatgttcaaacttcgctccacgtgggaccaaatcttaccgccgaagaagctccacagc
ttagacgtgcacgtcaacaagatagacccggcgtggcccatacggcctccgcccgcctcc
gctaacaccggcagcattcacgtcaaccccaagttcgtaaccaagctgcctgaggagccg
aaccctccggaggcggccgaggtgatgaggcagcagctgctggcgaagcagaagcagctg
ctggagctgcagcagaaaaagttggagctggagctcgagcagacgaaggccaagctggag
gcatctttgtctgggaacatccccggagcacccaggcccctggttggccaccgtcccccc
tccgtgcccgtccaggagatcaagccgcagccggcggcgccgctctctcactcgcagctt
accacgagcgccgggggagttccggcggcgcggcacggcacggccaccgtgatggttcac
ccggggcgcgacccgcgtaccaaccgcgacccccgcatgaaccgagacccccggctgcag
atgacgcagcagcatcacgagcagcagcagctggcgttgatggaggatcaagtcagtgat
gcgaaggagacgtcgccggtgcccgctgcgccgtcgcgctcctcgccctgccgggcgacg
ccgagccccgccccccgggccgagggcggcagcccccccgaggtggcggcggcgccggcg
cgaccggccgccggagcgcgctcgtcccccgcatcgaagccggtcgacaaacggcacgag
gcgccggcgaaggcggcgggcaagcggagcgacggaaaggatccgccgttcggcggcgag
cggaagaaggaaccctcgtcgggcggagaccggaagaaagggggcgacgctcccgacccc
aagaagatgggcgacgcgtccggcaaggacgggcgcaaggccccgcgcgattcggcgcga
gcgtccgccaagccgcgcgaccgctcccccccgccccggcggtcgtccccgtcgtcgcgc
aggaggggtcggcgctcgccgcccgcctgggcgccggggagcggccgcaggaagacgagc
tccccccttcccgcgtcgcacggcggcggcgcgcgccacaaaagccccacgcctcccccg
gccgggccggcggtcgcggcgggtgcggcggcggcgacgtcggccgcggcgacggctctg
ccgcgggcgacggacaagcggcgcgccagccagtcccccgccaaggcggccgactggccg
accaagcggaggaatttggactctccgctcagggccacggggagcgacgccggcgccggg
gggagcgggcggcgcaagggaggcagccccggagcgccgtcgcgtagccgtgcgagggag
cggggggagcgcggcgagagggagcgcggcgagggcgtccgtgggagccgctcgccgatg
acggaggggcggttgccgacgaagaggcggaggagccagtcccccaggtctccgcgaggc
ccggcggccgccgccgcccccagcggcgccggctcgaagaagacgactcccgagagagtg
ccgctgcaggccaacctgccggcgcggggaccgcacggcaaggccgggtgggcgcccgct
gcgaggggggccggctgcgccccccacccacggcacggccccgaatggcgacgcaacaac
aaacgcggtagtggtggtggtggcggcggtggtggcgttgtcgccggcggtggcggtggg
ggggcccgggacaagccccccgaggtggagaaggagccggagtacctgggctcgccccag
ttctcgcccgagccccccccctccgaacccgacactcccaacgccggcgaggccccccac
ctgcacaagcgcttccgccgctctgcctgggagcagttcaaggggatccgcaccggccag
gagaaccaaccgcagcagcagcagcggagggactcttggggcgcgggggtcagcgtccac
cgccgcttcccgttcccccgcacgcccacgcagcaccaccctcggcccagcaccgacccc
gagctgcacatccccaaggagatcacgcaggccaacaagcacgagctgttgcgcaaggcc
gatatgcagcgcgagtccggcctcatcaccaacgagcagcacatgcagatggtgcaccag
ctgaaccagctgttcaagctgcggcctcgcggcgactcgggcccgcggcccctcctgtcc
gaggccgacatggcctactaccagcacaaggcgagcctcaagcagcagggcaagcggccg
cccggcgtgcacccgatggcgccgcacggggagcagcagccctgcgacggcccgcggtcg
ttgcagacccctccaccgccgctccgctccctcgccgacgggccttggcacggcccgcac
gcggccgagtccagcgccttcgacaagcggcccggcaagcagccggtgccgctgcccgcc
agccccggtggcgtctcccgcaagcccctgctgatgactccgacgctggggcggaggcct
ccgctgctgggaccatcgccgaacctgcggagggggggaccccagccgcctccgccgccc
cccgttcccgttgccgcgaccgccgccgccgctcctgcggccgccaccgccgtggccggc
ggcgcgtcgacggccgtggccgcggctgccgctggcgcggacgaagccgcggtgaagagg
gaggacgaggagcgagggccggccgacgaaggcagcagggcgcgccgggagcgagtggag
ctgcccagggagggcagcgccggtccccagggtcccgagcctccgcgtgtgagggggggg
cagcgtggcgagtggggtggggggcccaggagagtgggaaccccccccgagcactgggtt
cctccgcgggaggttggggagcgcagaggcaagtttgagaagcttcccggccccggcgtg
gaggaactgcgggcacggcgctcgcgcgacccctcgccagcggtggacgccccctacgcc
tctccgcacggccgccccttcgacggcgccgacgggttcggccaacgtggcggggccggc
ggcggcggcttcaacaacaacagcagcagcaacaacaaagacaacgacccccccgggtgg
tggcgcgacgaaccgcgcagccctcagcgcgacgacgaactccctccacgccgctttgac
gggccccctcacccgcccggccggcccgacggtcccgtcgacagattttccgacgggccc
ccggagaggttcgccgacggcccccccctcggcaggttccccgataggcccggctcgagg
ttcgacggaccccaggggcccgtgttcgacgggggccagaggttcgacgggcccgccttg
gatgggccaaactttgacgggccgcaagggtcccggtttgacgggccgcagggaggaccg
agattcgatgggccacagggcggacacagattcgacgggccgcagggcggacacagattc
gacgggccgcagggcggacacagattcgatgggccgcagggaggacccagattcgatggg
ccgcaaggacccagatttgacggcccacagggtcccagatttgatggcccacagggtccc
agatttgacggcccacagggtcccaggttcgacggcccacagggtcccaggttcgacggc
ccacagggtcccaggttcgacggcccacagggtcccaggttcgacggcccccagggtccc
aggttcgaaggcccacagggtcccaggttcgaaggcccccagggtcccagatttgacggc
ccccagggcatgcgattcgacggaccccagggccccaggttcgatgggcctcagggtgtg
cgtttcgacggcccacagggtcccaggttcgacggcccgcagggcatgcgattcgacgga
ccccagggccccaggttcgatgggcctcagggcgtgcgtttcgagggaccccagggcatg
cgattcgacggaccccagggtcccaggttcgacggcccgcagggcatgcgttttgaggga
ccccagggcatgcgattcgacggcccgcagggcatgcgtttcgagggaccccagggcccc
aggttcgacgggccccagggtgtgcggtttgacgggccgcaagtgccccgatttgaaggg
ccgcagggcgtccgattcgaagggcaccgcttcgaggggcctcgcatgctgcactttgag
gggccgcagtctcatccggggccacgattcgatgggccttcggttcctcggttcgacggc
ccgggcggcgccggggctcagtttggcgggcagcagcagcagcagcagcgtcaacaacag
gccgcgtttgaggggccgcacggggggcagcgctttgacggcgggccgcagttcgtgacg
cagcagccgggccaccagacgggcccctttggattcccgccgggttcccacctccaggga
atggcgatggggcccaacgaccaccacatgggcaacctcggcatgggcattcctcagcac
ggccagcagctcatgggcatgggaccccggccgcactttggccctggggcgggccagccg
ttcatgccggcctcccaggtgcaggtggccatgatgtcccaggccctgcagcacggcgcc
atgatccgcgggcccatgcagcagcagcaccagcagcagctcatgcagcaccagcatcgc
atgtcgatggggctgatgggatcggacaaccacatcggccaggtggacgtgaactcgctg
ttctcgaagctcgtggcctcgggaatcctgcaagtccagacgacgacgacccccggcacc
gccgacgacgctcgcaacgagagcaacgctcgggtgacggagggggcggccaagaaagca
gaggaggcctcgaaagaggatgaggaggtggacgaggaggaggaggaggacgacgatgtc
gacatgccggacctctccggcttcgccatcgaagacctcaaacagcgctacgacggggtg
gtgcagcgcctttactcgggcatccagtgctactcgtgcggcatgcgcttcacggcgcgc
cagacggacgtctacgccgaccacctcgactggcactaccgcatgaaccgcatggacaag
gacctgagcaagaaggtcacccaccgccgctggtactactcgctcgtggactggatcgag
tttgaggagatcgccgatctggaggagcgggccaagagccagttcttcgagcaggtgcag
gaggaggtggtcctcaagacgcaggaggccacgcgagagaaggagttcctgagcgtgccc
gccgggcccgccggcgtcgaagagctgtgcgagatctgccgtgagcagtttgagcagtac
tgggacgaggacgaggaggagtggcacctgaagaacgccgtcagggtggacagccggacg
ttccacccgacgtgctacgaagaccacaaggattcgtcatttgacctcactccgactccc
acgacctccatgcaggagaacccgctcgagtgcgcactgagcgacgctcgcgaacccggc
gttgttgacaacgatggcgccgccgacgccgtccattcggcgtcgttggtcgcgtgcggc
tcccaggactcggcgctgggcagctcgctggaaatctccccgtcagactcggctccgcag
gacgctgcgccgtcgcgggagagccgtccgaccggggtcgcggtggaagccggcggagac
gccgtctccgcgccggacggcgccgacgggggctccgaccgggcgggcgaacggcccgcc
gacgccgcggaagctgccggtaacgctgctgttaccgctgccagtaccaccgccggtacc
gccaccgccgccaccgcttctccctcgccgccgggcggcaccgaggtgtcggtgcgaccc
gccgacgtgcaggtcaaaatggagatggagtga
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