Lethenteron reissneri (Far Eastern brook lamprey): 133358221
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Entry
133358221 CDS
T09663
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04510
Focal adhesion
lrj04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133358221
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133358221
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lrj00536
]
133358221
Glycosaminoglycan binding proteins [BR:
lrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133358221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Amnionless
TILa
PSP94
Motif
Other DBs
NCBI-GeneID:
133358221
NCBI-ProteinID:
XP_061432448
LinkDB
All DBs
Position
61:1640850..1706317
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AA seq
1449 aa
AA seq
DB search
MMIRRTFWLLAVQALLAVTVRCQDDAPLGSCEDEIGQLHDNKDVWKSEPCTLCVCDNGNI
LCDDLICEDLMDCANPVIPEGECCPICGDENGAAKLQLTEEPKVEVKPARGGKANARRPG
RPPVPSQPENGRRPVIPVPSYPESVGPYAAQMGGGYKTESTETGAPGPMGPRGPPGLPGP
SGPAGSSGAPGEPGEPGASGPVGPVGPVGSPGRAGEDGHPGKAGISGERGAPGSQGARGF
PGNPGLSGMRGHKGYDGLDGNKGEAGSAGPKGERGPSGANGAAGLTGPRGMPGERGRSGG
AGSAGARGADGAPGPAGPAGPIGGVGVPGFPGSPGNKGEVGPAGAIGAGGQQGPAGEPGI
GGGIGPAGPAGLRGANGAQGPKGPSGDSGPAGGPGMPGPRGPLGPPGSSGPAGPRGIAGE
PGVPGFKGESGAKGVPGASGPAGPSGPSGEEGKNGARGEPGASGPAGAAGETGAPGGRGM
PGPGGNAGSIGMPGERGAAGPAGAKGPEGGPGRPGDSGIPGARGSTGSPGAAGSEGKPGV
SGPVGGDGRPGPPGPSGVRGLPGPNGFPGPAGGAGEAGKPGDRGPSGSAGPRGAPGKDGE
GGPAGLAGPVGPVGSRGERGAAGLPGAQGLPGPSGANGELGRAGSMGSPGDRGGPGPAGA
RGEAGIPGERGAPGPAGAAGPRGEAGPAGTDGGKGEAGPAGPAGGAGSPGMMGLPGDRGS
GGTPGEKGEKGDGGPAGSAGNPGRDGPRGPDGPVGPPGPLGPGGERGEAGPSGPAGPAGL
QGPPGERGSNGASGGPGFPGPPGSDGQPGTRGERGEAGGKGEGGAAGPPGPYGPAGPPGP
AGLVGGKGGIGPAGSAGPVGFPGASGAPGGPGPAGLTGPPGGPGPAGKSGPRGPRGDGGP
SGRDGSTGPGGPPGPPGERGPSGATGASGPVGPPGPPGLSGGGGMLGVPGTRGERGGPGG
SGPPGAMGRDGAPGPAGERGPDGPPGPAGAPGPAGDSGREGNAGSDGAPGRDGYAGGKGE
SGDAGLAGAAGASGMMGAPGPSGPAGSTGNRGETGPGGPGGPAGPAGPRGPAGPSGGKGG
KGEAGGAGAAGEKGFRGDPGPQGMHGGMGRPGESGGAGAAGPTGPRGIPGSQGPAGRDGH
AGNAGIAGGTGPRGPSGSSGPAGPAGPPGPPGPPGPSGGGGGYFYESVQTEVEKGPDPLR
FYRGDEAVQEKAVQAQEMEASLKTISGKVDLLQVPDGSRERPARTCRDLHLTHPDLKSGN
YWVDPNKGSPIDAMEVWCNMERGHTCVAANPKSVAHKSWHSAQGKEQKHIWFGENVQGGF
KFTYGDDSLPANTAAVQITFLRLLSREASQKLTYHCRNSVAVSDERGDFGKALLLQGSSE
VEIRAQGNSRFTYSVLEDGCKSHTGQWGRAEIEYKSQKTSRLPILDIAPMDIGGPEQEFG
IDIGPVCFF
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgatgatccggaggaccttttggctgctggcggtgcaagcgttattggccgtcactgtg
agatgtcaagacgatgcacccctcgggagctgtgaggacgagatcgggcagctgcacgac
aacaaggacgtgtggaagtccgaaccgtgcaccctctgcgtctgcgacaatggcaacatc
ttgtgcgatgacctcatctgcgaggacctgatggactgtgcaaaccccgtcatccccgag
ggggagtgctgccccatctgcggcgacgaaaacggcgctgccaagcttcaactcaccgaa
gagcccaaggtggaggtgaaaccggcgcgtgggggcaaggcaaatgctcgccgtcccggt
cggccacccgtccccagccagcccgagaacggaaggcggccggtgattcctgttccttcg
tacccggagtccgttgggccgtacgcagctcagatgggcggcggctacaagacggagtcg
acggagacgggcgcccccggccccatgggacctaggggacctcctggcctgcctggccct
tcgggcccagctggatcttcgggagccccaggagagcctggagagccaggagcttctggt
cccgttggccctgttggacccgttgggtccccaggccgtgctggtgaagacggtcacccc
ggcaaggctggcatctccggcgagcgcggggctcccggttctcagggcgcgcgtggcttc
cctggcaaccccgggctgagcggcatgaggggtcacaagggctacgatggtctggatgga
aacaagggcgaggctggcagcgctggacccaagggtgagcgtggaccatcaggagcgaac
ggagctgctggtcttacgggaccccgtggaatgcccggcgagaggggacgtagcggcggc
gccggatctgctggagctcgtggtgctgatggtgcccctggccccgccggacccgcgggc
cccatcggaggtgtcggtgtgcccggcttccccggaagccccggaaacaagggtgaggtc
ggccccgctggtgctatcggagccggtggacagcagggaccagcgggagagcccggcatt
ggcggaggcatcggacctgcaggccctgccggtcttagaggcgccaacggagctcaggga
cccaaaggaccttcgggagactccggacctgccggtggccccgggatgcccggacctcgt
gggccccttgggccccccggttcgtcgggccctgctggacccagaggcattgcgggagag
cccggagtgccgggattcaagggcgagagcggtgccaagggagtgccgggagcatcgggg
cccgcgggtccctccggcccaagcggagaggaaggcaagaacggtgctcgtggcgagcct
ggcgcctccggaccagctggcgccgccggcgagacgggagctccgggcggtcgtggaatg
ccaggacctggcggcaacgccggatcgatcggaatgcccggcgagcgtggagcggccggc
cctgctggagccaagggacctgaaggaggacctggacgcccaggagactccggaattcct
ggagccaggggttccactgggagtcccggagcagctggttccgagggaaagcctggcgtc
tctggccccgtgggaggagatggtcgtcctggccccccaggcccctctggagttcgtggt
cttcccggccccaacggattcccagggcccgcaggaggcgctggcgaggctggcaagccc
ggcgacaggggtccttccggttccgcagggccacgtggggctcctggcaaggatggtgag
ggcggccccgctggtctggcaggtcccgtgggccccgtgggttctcgtggtgagcgtggc
gctgctggtctccctggagcacagggccttcccggaccctcaggggcgaatggagagctg
ggtcgcgccggcagcatgggaagtcctggtgataggggtggtcctggacctgctggtgcc
cggggagaggccggaatccccggggagcgtggagccccaggccccgctggcgccgcaggc
cccagaggagaggctggacctgcggggacggacggaggaaagggtgaggctggccctgca
ggcccagccggaggagctggcagcccgggcatgatgggactccctggtgaccgagggtcg
ggtggaactcccggagagaaaggagaaaagggcgacggtggtccagcaggaagtgcaggc
aaccctgggagggatggccctcgcggtccagatggtcccgttggtcccccaggtcccctg
ggtcccggtggagagagaggtgaagctggtccctccggccctgctgggcccgcaggtctc
cagggaccccctggtgagcgtggatccaacggtgcttctggtggtcctggattccccgga
cccccgggtagcgacgggcagcccggcacccgtggcgagcgtggtgaggctggcggcaag
ggcgagggtggcgccgcaggtcctcccggcccctatgggcctgctggtcccccgggccct
gctggtctggtcggtggaaagggagggattggacccgccggctcagccggccccgttgga
ttccccggtgcttctggagcccctggtggacccggacccgctggcctcaccggacccccc
ggcgggcctggcccagccggcaagtccggaccccgcggcccacgcggagacggcggcccc
tccggacgcgacggctccaccggacccggcgggcccccgggcccacccggcgagcgtgga
ccctccggagcaaccggcgccagcggcccagtcggcccccctggaccccccggattgtct
ggcggcggaggaatgctgggagtgccggggactcgcggagagaggggaggacctggaggt
tctggcccacctggagccatgggcagggatggcgctcctggccccgctggcgagagggga
cccgacgggcccccaggccccgctggtgcccccggacccgccggtgacagcggtcgtgaa
ggcaacgccggttctgatggagccccaggccgtgatggatacgcaggaggcaagggagag
agcggtgacgccggacttgccggtgccgcgggagcgtcgggcatgatgggagcgccggga
cccagcggacccgctggcagcactggcaaccgcggagaaaccggtcccggaggaccaggc
ggccccgctggccctgctggaccccgaggccccgcgggtccatctggcggcaagggaggc
aagggagaggctggtggcgctggagcggccggagagaagggattccgtggagatcccggt
ccccaggggatgcacggcggaatgggtcgccctggagagagtggtggtgctggagctgcg
ggtccaaccggtccaaggggcatcccgggttcccagggtcccgccggtcgtgacggacac
gccgggaacgccggtatcgccggtggcaccggtccccgtggcccctctggaagcagcggc
cctgctgggcccgccggacctccgggcccacccggtccccccggcccctcgggaggcggc
ggcggatacttctacgagtcggtgcagaccgaggtggagaaggggcccgaccccctgcgc
ttctaccgtggcgacgaggccgtgcaggagaaggccgtgcaagcacaggagatggaggcg
tcgctcaagacgatcagcggcaaggtggacctcctgcaggtgcccgacggcagccgggag
aggcccgcgcgcacctgccgcgacctgcacctcacccaccccgacctcaagagcggcaac
tactgggtggacccgaacaagggcagccccatcgacgccatggaggtgtggtgcaacatg
gagaggggtcacacctgtgtggcagccaaccccaagtcggtcgcccacaagagctggcac
agcgcccagggcaaggagcagaagcacatctggttcggggagaacgtccagggcggcttc
aagttcacctacggcgacgactcgctcccagccaacacggcggccgtgcagatcaccttc
ctgcgcctgctgtcccgcgaggcgtcgcagaagctcacctaccactgccgcaacagcgtg
gccgtgtccgacgagcggggcgactttggcaaggctctgctgctgcagggctccagcgag
gtggagatccgtgcccaagggaactctcgcttcacctacagcgtcctggaggacggctgc
aagagccatacgggtcaatggggaagagcggaaattgagtacaagtcacagaagacttct
cgtctgcccatactggatattgcgccaatggacattggagggcctgagcaggagtttggc
attgatattggccccgtctgcttcttctaa
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