Lethenteron reissneri (Far Eastern brook lamprey): 133358285
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Entry
133358285 CDS
T09663
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3-like
KO
K14323
protein CASC3
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03013
Nucleocytoplasmic transport
lrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133358285
03015 mRNA surveillance pathway
133358285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133358285
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133358285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
133358285
NCBI-ProteinID:
XP_061432505
LinkDB
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Position
61:complement(8718097..8737139)
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AA seq
644 aa
AA seq
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MSPTVFEDDAPPTIAGGKNSKRDEEEEDQKNPAFVPRKGLFFEHDIRGGNNKEDARAKVH
NRKLWRDAGRWEHDRFREDEQAPKSREELVALYGYDIRSGAHADDSADLRSPRYRSPSDR
WSRESPPVNRGPYQAPKREPVERPARLRDEDRDTERRPAPRRPGPTTAGPAALPGRPRAY
VEQRAYVEQRAYTEPRARAYTQGDSSRDQXPGTPAARDGTRSSPQRNQQRHQQHNGNTEE
EGEKRAEILSAGTEAEVGARCAFAATAAATVAPGTGDAPFAVDLAQDKAPERKSYSRVRR
LRNKPTELPGQASTTDPISPAPLSALAPSTVPLVALPETQAATALPHQHNPQQLQHQQPL
APPLKPLGERTRPIAALLPQPLWDVPVLEPSPVGRLEHGMAQISLGQTWNPGAQPHYLPT
QREHRGGATHLPVNSVPPPFNRIEDLGGQAGRAKRYSSQRSRPVPEPHPTPPMHIPLIEG
SYYDPNTAYQAPLYGHGGDSPAAIPPQGMMVQPDLNLPHPGLHPHQSPTHMYAPPVSMAT
GQPPPPAQMLGYFPSNIMYPGAALPNPGYTYTPAPIPPPPPPPAHIFPPPQAQSQVYGGV
TYYNTAQQQAQPKPSPPRRPSQPVSVKPPPEVSRKDRLKERSNV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgaccgtgttcgaggatgacgccccgcccaccatcgcaggcggcaagaattcc
aagcgggacgaggaggaggaagaccaaaagaacccggcgtttgtgccgcggaaagggctc
ttcttcgaacacgacattcgaggaggcaacaacaaggaggatgccagggccaaggtgcac
aaccgcaagctgtggcgggacgcgggccgctgggagcacgatcgcttccgcgaggacgag
caggcacccaagtcgcgcgaggagctcgtggcgctgtacggctacgacatccgctcgggc
gctcacgccgatgacagcgctgacctccgatcgccacgataccgcagccccagcgatcga
tggagccgggagagtccccccgtgaaccgcgggccttaccaggcccctaagcgggagccc
gtcgagcggccggcacgtctgcgcgacgaggacagggacacggagcggaggccggcgccg
cggaggccgggcccaaccaccgccggtcccgcggcactgcccggcaggccccgcgcctac
gtggagcagcgcgcctacgtggagcagcgcgcctacacggagccgcgcgcccgcgcctac
acacagggagactcgagcagggatcagnccccggggacgccggcggcgcgggacggcact
cggtcgtccccgcagcgtaaccagcagcggcaccagcagcacaacgggaacacggaggag
gagggcgagaagcgggcggagattttgtccgcgggcacggaggcggaggtaggagcgagg
tgcgcttttgctgctaccgccgcagcgaccgtggcgccgggaaccggggacgcgccgttc
gcggtggacctggctcaggacaaggcgccggagcggaagtcgtactcgcgcgtgcgccgc
ttgcgcaacaaacccacagagctgccgggacaggcgtccacgacggaccccatctcgccg
gcgccgctttcggcgctggcaccgagcacagtccccctcgttgcgctgcccgagacgcag
gcggccaccgcgctaccgcatcagcacaatccgcagcagcttcagcatcagcaaccgctg
gcgccacccctaaagccgctcggtgagcgcacgagaccgatcgccgcgctgctgccgcag
ccattgtgggacgtgcccgtgttggagccttcgcccgtgggtcgtctggagcacggcatg
gcgcagatcagcctcggccagacctggaaccccggggcacagccgcactaccttcccacg
cagcgcgagcacagaggtggtgccacgcatctccctgtcaattcagtgcctccaccgttc
aaccgaatcgaggatctgggcggccaggccggccgggcaaagcgctactcgtctcagcgc
agtcggccggttcctgagccgcaccccaccccccccatgcacattccgctcatcgagggc
tcctactacgatccaaacacggcataccaggctccgctgtacgggcacggtggggacagc
ccggctgccatccctccccagggcatgatggtgcagcccgacctgaacctcccacaccct
gggctgcacccgcaccagtcgcccacccacatgtacgcgccgcccgtctccatggcgacg
ggccagccaccaccgccggcccagatgctcggttacttccccagcaacatcatgtacccg
ggggcggcgttgcccaaccccggctacacctacacgcctgcccccataccgccgcctccg
ccgccgcccgcacacatcttccctccaccgcaggcgcaatctcaggtttatggcggagtg
acgtactacaatacggcgcagcagcaggcgcagcccaagccgtcgccgcctcgccgaccc
tcccagcccgtctctgtgaagcccccgcctgaggtgagcaggaaggacaggctgaaagaa
aggagtaacgtgtga
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