Lethenteron reissneri (Far Eastern brook lamprey): 133358293
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Entry
133358293 CDS
T09663
Symbol
VPS8
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133358293 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lrj04131
]
133358293 (VPS8)
Membrane trafficking [BR:
lrj04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133358293 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Clathrin
TPR_Vps41
TPR_VPS8_2
WD40_CDC20-Fz
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_11
zf-RING_5
zf-RING_2
zf-RING_UBOX
WDR55
Beta-prop_HPS5
DNMT3_ADD_GATA1-like
EIF3I
Motif
Other DBs
NCBI-GeneID:
133358293
NCBI-ProteinID:
XP_061432518
LinkDB
All DBs
Position
7:13081514..13115303
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AA seq
1406 aa
AA seq
DB search
MSSAESSPSRCASMADLTDDIEELDDKEFDLPQVDTPPTLESILNEDDEEENPFQLDDPA
LFLADGSDACSVETSSLASTDSGDRPDSRKKKKAEQKKPFHGSVLKHVILKGVSSQIVSA
ADRVEAGLPTAMAVSNVIAVGTAHGLVLVYDPNQALRLCLGSTAIGAQYGAVSALGINRD
CTRLLCGFAKGQITMWDLTNGKLLRTIMDAHPPGTAVCTLRLVFTDDPTLAICNDSGGSV
FELAFKRVMGVRTCESRCLFSGAKGEVCCIQPLWFPTNLKEHPMSQHFLLAMASLTKILI
VGLKPSLKVMLSVSYGKTNPASVPLMAWHFTLVNGSADPVLAFCRGSVVHFILASCRDSD
NIHFSKQRELHLNYEPINLTWMNSRVLALLDDTETLHVVERANQEQLEALDIASLQLVYN
SSHFKSLATGGNVSQALALVGEKACYQSICSFGGQVLYLGIKSVHVMSLRTWRERVDLLV
RQERFPDALNLAWSFHQGSAKAVLGLPVNIAKRKSLVADKMTDILMQYVMISMKKCPEPG
KTQALEKHFQEVVPMCIEYCLLLGKTELLFTQMYEQLGESSVARGVFLESLEPHVLGDRL
TSITPQAMRDLILHYQGQARMATVEACILHMDITSLDLQQVINLCWSHGLYDAVIYIYNT
GMNDYVTPIKEILKVLQTALSTGRQLPGDKVTAGNKLLVYLSCCLVGRAYPMGDIPKNLA
PTVKKQVFEFVIKLHSDEAEVQEEVYPCVRTLLHFDTREFLNVLTLTFEDFRNDKQVVEY
QQRIVDVLLQVMVEGKGFSPSQVGSLFTFLARQLAKPENTLFVNRHLFDQVLEFLCGADD
DSRHAERQQALLELLQAGGTVHFDESKLLALAEKAKFYLVCEFMFEKKQMYDQIVMCYLK
DEARREDVFNFVHNILSIPGYSEQEKALVHQKVMANIQELVSISPQKTADLVISDLSESL
IGILALLEGHPRLLFGFLQCILETGETSPLSRDALSASSDVNERYIDLLCQFSPEKVLPF
LRTSEQYRIDQAIKLVEEHGVSNALAYLLEKSNDVQRAFSIMLQILKEKLDVLMQSLGTA
SNQKAVDQRLLEGVQTALEDVTQLCQRNSGHLGAEEREGLWFPLLEVMMSPQREIKKMTS
SVIAEELKNLTKQLLNSMTGFLTLPAILQRIIQDPIYGSGRFGEIKELVLGMLDTFSYEQ
TLLETTTGLLNQDLHWSLSQLRKAVCRGLHPRQDACGVCTQHYGRRQSPGQRIIIFGCGH
VYHEDCLRGTGCHNAVEGQSNWSCYLCHASNRDGGVIANQAHARTTSLAQIRVASAKEEK
KATTKGSKKVPEVVIDPEQFKCFDELQKINKGRSRIAILAELSKSHSDSEGASYRPLSMV
SSPVGHESVFQNEHFQLRLDAPPPKD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccgcagagtccagccccagccgctgtgcgtctatggctgatctgacggacgac
attgaggagttggatgacaaagagtttgaccttcctcaagtggacacaccgcccacattg
gaaagcattctcaacgaggatgacgaggaggagaatcctttccagctggatgacccagcg
ctcttcttggccgacggctcggacgcttgttccgtggagacgtcctcactggccagcaca
gacagtggcgaccggcccgactccaggaaaaaaaagaaggcagagcagaagaaacctttc
catggctcggtgctgaaacatgtcatcctcaagggcgtgtcttcccagattgtatctgca
gcagatcgagttgaagctggactgccaactgctatggctgtctccaatgtaatcgcagtg
ggcacagctcatgggttagtgctagtgtacgaccctaaccaggcactgaggctgtgtctg
ggcagcacggctatcggagcgcagtatggtgccgtgtctgccctcggtatcaaccgcgac
tgcacccgccttctttgtggctttgccaaggggcagatcaccatgtgggatctgaccaat
ggaaagcttctgcgaacaataatggatgcacatcctcctggcacagctgtttgcacatta
aggttagtattcacagatgatcccactttagcaatctgcaatgacagtgggggctccgtc
tttgagcttgctttcaagagggtgatgggtgtgcggacgtgcgagtcacgctgtttgttc
agtggcgcgaagggggaggtgtgctgcatccagccgctgtggtttcccaccaacctcaaa
gaacaccccatgtcacagcactttcttctcgccatggcctctctcacgaagatattaata
gttggactgaagccatccctcaaagtgatgctgtctgtgtcctatggaaagacgaacccg
gcgagcgtgccgctcatggcatggcacttcaccttggtgaatggctcggcagaccctgtg
ctcgcgttctgcaggggctccgtcgtccacttcatcctagccagctgccgagactctgac
aacatccacttcagcaagcagagggagctgcacctgaattatgagcccatcaacctcacg
tggatgaactcgcgcgtgctggccttactggacgacacggagacgttgcacgtggtggaa
cgggcgaaccaggagcagctggaggctctggacatagctagcctccagctcgtctacaac
tccagccacttcaagtcgctggccacaggcggcaacgttagccaggccctggcacttgtg
ggagagaaggcatgctaccaatccatctgcagctttggagggcaagtgctttacctggga
ataaaatcagttcatgtgatgtcgttgcgaacttggcgagagagggtggacctgcttgtg
cggcaggagaggtttccagacgccttgaatctggcctggtccttccaccaaggctctgca
aaggccgttctgggtttgccagtgaacattgccaagagaaaatcattggttgcagataag
atgacagatatcctcatgcagtatgtgatgatctccatgaaaaaatgccctgagccaggc
aagacacaagctctggaaaaacatttccaggaggtggttcctatgtgcatcgaatactgc
cttctgctgggcaagacggaattgctcttcacccagatgtatgagcagcttggggagagc
tcagtggcgcggggcgtgttccttgagagcctggagccccacgtcttgggggaccgtctc
accagcatcaccccgcaggccatgcgcgacctcatcttgcattaccagggccaggcacgc
atggccacggtggaggcgtgcatcctccacatggacatcaccagcctcgacctccagcag
gtgattaacctttgctggtctcatggcctgtacgatgctgtaatctacatctacaacacg
ggaatgaatgattacgtcacgcccatcaaggagatcttaaaggtcctacagactgcactg
agcactggtcgtcagctgcctggtgacaaggtgactgcaggcaataagctcctggtctac
ttaagctgctgcctggttggcagagcttacccaatgggtgacattcccaagaacctggca
cccaccgtcaaaaagcaggtgtttgagtttgtgatcaagctgcactcggatgaggcggag
gtgcaggaggaggtctatccgtgcgtccgcacgctgctgcactttgacacacgggagttc
ctcaatgtgctcaccctgacgtttgaagacttcagaaatgacaagcaggtggtggagtac
cagcagcgcattgtggatgtcttgttacaggtgatggtggaagggaaaggcttttcccca
tcacaggtagggtccctcttcaccttcctggcgcggcagctggcaaaaccagagaacacg
ctgttcgtcaaccgccacctctttgaccaggtgctggagttcctgtgcggcgcggacgat
gactcacggcacgctgagcgccaacaggccctgctggagctgctgcaggcagggggcacg
gtccacttcgatgagagcaagctgctggcactggcagagaaagccaaattctacctcgtg
tgcgagttcatgtttgagaagaaacagatgtacgaccaaatcgtgatgtgctacctgaag
gatgaggcccggagggaggacgtttttaactttgtccacaacatcctgtccattccgggc
tacagtgagcaagagaaagctctcgtacatcagaaggttatggcgaatatacaggagctg
gtgtccatcagcccacaaaagacagccgacctggtgatctcagatctctccgaaagcctc
attggcatcttggctcttctagaaggccatcctcgcttgctgtttggatttttacagtgc
attctagaaacaggggagacctctccgcttagccgagatgccctatctgccagctcggac
gtgaatgagcgctacatagacctgctgtgccaattcagtcctgagaaggtcctccctttt
ctgagaacttctgagcagtaccgcatcgaccaagccatcaagcttgtggaggaacatggg
gtgagcaatgccttggcttacctcctggagaagagcaatgatgtccaaagagcattctcc
atcatgctgcagattttgaaggaaaagcttgatgttcttatgcaaagcttgggtacagca
agcaatcagaaagcagtggaccagcgcctccttgaaggggtacagacagcactggaggac
gtcacccaactgtgtcagcgcaactcagggcacctgggcgcggaggaaagggaggggctt
tggtttccccttctggaggtgatgatgtcaccgcagagggaaattaaaaagatgacgtcg
tctgtcattgccgaagaactgaagaacctcaccaagcagttactgaacagcatgacgggg
ttcctgaccttgcccgcgatcctgcagaggatcatccaggacccgatttacggctctggc
cgatttggagagatcaaggagctggtgcttgggatgttggacacattcagctacgagcag
acacttctggagacgactacagggttgctcaaccaggacctgcactggtcgctgtcacaa
ctccgcaaggccgtgtgccgtggcctgcacccacggcaagatgcctgcggggtgtgcacc
cagcactatggccgccggcagagccctggtcagcgcatcatcatctttggttgtggacac
gtctaccacgaggactgcttgcgaggcactggttgccacaatgccgttgagggccagagc
aactggagttgctacctgtgccatgcaagcaaccgggatggaggagtgatcgcaaaccag
gcgcacgcacgtaccacctctctcgcgcagataagagttgcatctgcaaaagaggagaaa
aaagccacaacaaagggaagcaaaaaggtgcctgaagtggtcattgatcctgagcagttc
aaatgttttgacgagctacagaagattaacaaggggcgttctcggatcgccatcttggcc
gagttgtccaagagccactcggactcagaaggtgcatcgtaccgtcccctctccatggtg
tcgtctccagttggccatgagagtgtctttcagaacgaacattttcagttgcggttggat
gcacccccaccaaaggactga
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integrated database retrieval system
