Lethenteron reissneri (Far Eastern brook lamprey): 133358600
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Entry
133358600 CDS
T09663
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lrj04131
]
133358600 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrj04147
]
133358600 (COPA)
Membrane trafficking [BR:
lrj04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
133358600 (COPA)
Exosome [BR:
lrj04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
133358600 (COPA)
Exosomal proteins of bladder cancer cells
133358600 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
133358600
NCBI-ProteinID:
XP_061432962
LinkDB
All DBs
Position
62:314096..397352
Genome browser
AA seq
1225 aa
AA seq
DB search
MLTKFETKSARVKGLCFHSKRPWVLASLHSGVIQLWDYRMCTLIDKYDEHDGPVRGVDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWIISCSDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPTEDLVVSASLDQTVRVWDISGLRKKNLNPGSSGDA
ELRSISGVDLFGAADAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKLWRMNDSKA
WEVDTCRGHYNNVSCCLFHPRHELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAA
HPSLNLFAAGHDSGMIVFKLERERPAYAVHGGLLYYVKERFLRQLDFSSSKDVAVMQLRG
GSKNPVFSMSYNPAENAVLLCTRASNLENSTYDLYSIPKDSDSQNPDAPEGKRSSGLTAV
WVARNRFAVLDRMHSILIKNLKNEITKKVQVPSCEDVFYAGTGNLLLRDADSVTLYDVQQ
KRSLASVKISKVKYVVWSADMSHVALLAKHMIMICNRKLESLCSVHENIRVKSGAWDESG
VFIYTTSNHIKYTLTNGDHGIIRTLDLPIYVTRVRGTSVYCLDRDSRPRVLTIDPTEFRF
KLALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFALALECGNIE
IALEAAKALDDKGCWEKLGEVALLQGNHQMVEMCYQRTKNFDRLSFLYLITGNLDKLRKM
MKIAEIRKDVSGHYQNALYLGDVAERVRVLKNCGQKSLAYLTAATHGLDEEADGLKAQFD
LEKETLPEVNADAVLLQPPPPVMPLDTNWPLLTVSKGFFEGAMAAKGKAGQMAADLDMEV
GGGEGWGDDAELVLDEEGFADAVEGTGDDAAVKAAEEGGGWDVDEDLELPPDLDVPSGPL
TGGEEGFFVPPTKGTNQSQVWCTNSQLPVDHILAGSFETAMRLLHDQVGVVAFGPYKPLF
MQTLSRGRTAHQGLPSLPPLQGHPHRNWKDAGARGGLPAVGVRLAELIARLQACYQLTTA
GKFEEALERFRSVLLSVPLLVVDNKQEIAEAQQLVGICREYMVGLSMEVERKRLPKDTLE
QQKRTCEMAAYFTHCSLQPVHMMLVLRTALNLFFKLKNFKTAATFARRLIELGPKPDVGQ
QTRKILSACEKTPTDSHQLNYDMHNPFDICAATYKPIYRGKPVEKCPLSGACYSPEFKGE
TCRITKVTEIGKDVIGLRISPLQFR
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagttcgagaccaagtccgcccgcgtcaaggggctttgcttccactcgaag
cggccctgggtgctggcgagcttgcacagtggcgtcatccagctgtgggactaccgcatg
tgcacgctcatcgacaagtacgacgagcacgatggtcctgttcggggtgtggacttccac
aaacagcagccactgttcgtgtcaggaggagacgactacaagatcaaggtgtggaactac
aagctgcgtcgctgcctcttcacccttctcggtcacctagactacattcgaactacgttc
ttccaccatgagtacccgtggatcatcagctgctcggacgaccagacgatccgcatctgg
aactggcagagccgcacctgtgtgtgcgtgctgacggggcacaaccactacgtgatgtgc
gcccagttccaccccacggaggacctggtggtgtcagcgagcctggatcagaccgtacgc
gtctgggacatttccggcctccgcaagaagaacctgaatcccggatcgtcgggcgacgcg
gagctccgctccatctccggggttgacctcttcggcgccgctgatgccgtggtgaaacac
gtcctggagggccacgaccgcggagtgaactgggcggcgttccaccccactatgcccctc
atcgtgtccggggctgacgatcgccaagtcaagctgtggaggatgaacgactcaaaggca
tgggaagtagacacttgccgtggacactacaataatgtttcctgctgcctcttccacccg
cgtcacgaactcatcctcagcaactccgaggacaagagtatccgcgtgtgggacatgtcc
aagcgcacgggagtgcagacgttccgcagagaccacgaccgcttctgggtccttgctgcc
catccctccctcaacctcttcgctgcaggccacgacagcggcatgatcgtgttcaagttg
gagcgcgagcggcctgcttacgcggtgcacggggggctgctctactatgtcaaggagcgc
ttcctgcgccagctcgacttcagctcctccaaggacgtcgctgtcatgcagctgcgcggt
ggctccaagaacccggtgttcagcatgtcgtacaacccagcagagaacgccgtgctcctg
tgcacccgcgcgtctaacctggagaacagcacgtacgacctatacagcatccctaaggac
agcgattcccagaaccccgacgctccggaagggaagcggtcgtcgggactcaccgccgtg
tgggtcgcccgcaaccgcttcgcggtgctggaccgcatgcactcgatcctcattaagaac
ctcaagaacgagatcactaagaaggtgcaggtacccagctgtgaggacgtcttctacgca
ggcacggggaacctgctgctgcgcgacgccgactcggtcactctatacgatgtgcagcag
aagaggtctctagcttcggtaaagatctccaaggtgaagtacgtggtgtggagcgccgac
atgtcccacgtggccctgctcgccaagcacatgatcatgatctgcaaccgtaagctggag
tcgctgtgcagtgtccacgagaacatccgcgtgaagagcggagcctgggacgagagcgga
gtcttcatctacaccacatccaaccacatcaaatacacgctcaccaacggggatcacgga
atcatccgcacgctggatctgccgatctacgtgacgcgcgtgcgcgggacgagcgtctac
tgcctcgaccgcgacagccgcccccgcgtgctgaccatcgaccccaccgagttccgcttc
aaactcgcccttgtcaatcgcaaatacgacgaggtgctgcacatggtacgcaacgcaaag
ctggtggggcagtcgatcatcgcgtacctgcagaagaagggctaccccgaggtggcgctg
catttcgttaaggacgagaagacgcgctttgccctcgcgctcgagtgcggaaacatcgag
attgcgctggaggccgccaaagcgttggacgacaagggatgctgggagaagctgggcgag
gtggcgctgctgcagggcaaccaccagatggtggagatgtgctaccagcgcaccaagaac
ttcgaccgcctctccttcctctacctcatcaccggcaaccttgacaagctgcgcaagatg
atgaagatcgccgagatccgcaaggacgtgagcggccactaccagaacgcgctctacttg
ggagacgtggcggagcgagtgcgggtcctcaagaactgcggccagaagtccctggcgtac
ctgacggccgccacgcatggcctggacgaggaggcggacggcctgaaggcccagttcgac
ctggagaaggagacgctgccggaggtgaatgcagatgccgtgctgctgcagccgccgccc
cccgtgatgccactggacacgaactggccgctcctcaccgtttccaagggattcttcgag
ggcgccatggctgccaagggcaaggcaggacagatggctgctgacctggacatggaggtg
ggcggtggcgaaggctggggtgatgacgcggagctggtgctggacgaagagggctttgcg
gacgcagtggagggcaccggagatgacgcggcagtaaaggcggctgaggagggcggcggc
tgggacgtggatgaggacctggagctgccccccgacctggatgtgccgtctggacctctc
accggcggagaagagggattcttcgttcctccgactaaaggaaccaaccagagccaggtc
tggtgcacaaactcacagctgcccgtggaccacatcctcgccggttccttcgagacggcc
atgcggctattgcacgaccaggtcggggtggtggctttcgggccgtacaagcctctgttc
atgcagactttgtcgcgtgggcgcactgcgcaccagggcttgccctcgctgccgcccctg
cagggccacccgcaccgcaactggaaggacgcgggtgcgcgtgggggcctgcccgcggtg
ggggtacgcctggcagagctgattgcacgcctgcaggcctgctaccagctcaccacggcc
ggcaagtttgaggaagcgctggagcgattccgctccgtgctgctgtccgtgccactcctc
gtggtggacaataagcaggagatcgccgaggcccagcagctggtgggaatctgccgtgag
tacatggtagggctctccatggaggtggaacgcaagcggctacccaaggacaccctcgag
cagcagaaacgcacctgcgagatggctgcctacttcacgcactgcagcctgcagcctgtg
catatgatgctggtgctgcgcacggcactcaacctcttcttcaagcttaagaacttcaag
acggccgccaccttcgcccgccgcctcatagagcttggaccgaaacctgacgtgggccag
cagacacgcaagatcctctctgcatgtgagaagacgcccacagactcccaccagctcaac
tatgacatgcacaatccctttgatatctgcgctgccacctacaagcccatctacagaggg
aagccagtggagaagtgtcccctgagtggcgcctgctacagcccggagttcaagggtgaa
acctgccgcataaccaaggtgacagagattgggaaggacgtgattgggctgaggatcagc
cccctgcagttccgctaa
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