Lethenteron reissneri (Far Eastern brook lamprey): 133358825
Help
Entry
133358825 CDS
T09663
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133358825
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
133358825
3'-5' decay
Other 3'-5' decay factors
133358825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_30
PAM2
AAA_19
Mov-10_helical
UvrD-helicase
AAA_22
ResIII
AAA_16
AAA_5
AAA_7
MOV-10_Ig-like
Helicase_RecD
Peptidase_C58
Motif
Other DBs
NCBI-GeneID:
133358825
NCBI-ProteinID:
XP_061433256
LinkDB
All DBs
Position
63:complement(5965998..6065785)
Genome browser
AA seq
1598 aa
AA seq
DB search
MAHRLSARAGRAAACWGDSQRGARGHGGHGGHGGSGGGGGGGSGGGSPPPPASPVLSSAA
AASLALMAADDKAIVFDFKTMAGGHLQVLHTDTNMKKDDSKSELDFANSSEYEWRHRPPP
RGVSNPEDYALCQRFLELGWCTLGPQCDCAHSEAELGEWRRRHAIRAGARGDGGAGGGGE
MPCGGQEAALGYSESLIERWMTAPNPEAVLSEFVDGVDVSHSQDLTLAVSSKRFSATWEF
ALACKPPRSLQRVVLLYDSHRPHFHVVSVVPRDDSGFDAAPPGDSGRPPTPCGGGGDADS
SAALHRPPGGPSEASQGPGRRPDGAADGVAAGAVGGRQEWAAGDGDDGGGGGARGAYRVS
VEFSTDVYGTFRQTVVFDFGCWPVLARSLTVHTADTLVPSAEEDLQLLSCDWWDAGNPSV
TIVEFGVPVGVPAALIPAAGSAEEEGGVPGPTQLYRVPELPLGLFSSPALQRPLRAENYR
RRFHDLLYIEELAQYKEISRFNIRADLQLVRSYMLTGTSGGAKFAQGGELFARFRLGRSL
SEDTAHGRLLTTSVGTVLLRPVSVARPGAAGATAAIATDTTEDHDAAARRLSEDGSLEIE
EVVRHHHHLQQQHLLQLQQQQQQQQQQQRQQMNDRGWLEKAAAVPAMVPAMVEDEESRRA
RRLGLKVYQAMIEEKTKEYVFLRISRQCCQELGLRADQQIKVELQFQLNRLPLCEMHYAV
DRIPEPALLFPVVATPPVIPWGPHRQWDDQLDPRLNAKQKEAVLAATSPLAVPLPPVLLL
GPYGTGKTFALAQATKQALRQQHTRILICTHSNSAADLYIKDYLHPHVESGNPEARPLRV
YYRHRWVKSVHPVVQQYCLMSPSRSEFLPPVQEDVLKSRVVVTTLSTSRTLCQLNLPAGF
FTHILIDEAAQAMECETIMALALATCDTRIVLAGDHMQLSPVVHSRFARKKGLHLSLLER
LYELYPPAFPCRVLLCENYRSHTDIVSLTSELFYEGKLAASGRQPAHGELQPLAFYTARG
EAVQDKNSTAFYNNAEVFELVERVEEVCRKWPVAWGKLGEGSVGVVTPYADQVFRIRSQL
RKKRLYDVSVERVLNVQGKQFRVLFLSTVRTRHTRRHGTDTGSVAVAPALVVTATGEGAA
ASAEQCRDPLDDLDLGFLSDPKLLNTAITRAQSLLAVVGDPVALCSLGKCRKLWERFIGA
CHDSGSLQGTTLEQIRAELDGVELKKSYVLNPLAPEFVPRALRAAAAAAAATYFPSSPSG
GGGGGGGGGGVGGQHAWEQLHGGLPDVITHKPHSPSQGKSSFQRQSSHGQANGQVGQPSP
PGGSRVNAVNAANAAANAAANTAAGALPTASPLAQGPQPPSQQLGGTPEGPPSPLQRLEA
QGGAGSLLCMPQHSGYPPGFLLPMPVSPWPNRVAVDPRLLAQQAAAVAYHLTLLQAQQTR
GAGGGTAAAAASASAATSGATQAAPPTTPSAAALPYPPWGHPSSAVAAAATAGVPSLPWA
QNPQQQQQVLGNSGGSVTPDLDLHDKQLKLTVAAGESGAGCGGSGRHRQGAQKRMQQADF
SPGARRHPVPRCSSSSSSWSSTRQPNCSSSSSSSSTSR
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccggctctcggcccgcgctggccgggcagcggcgtgctggggagacagccag
cggggggcccggggacacggaggccacgggggccacgggggctccggcggcggcggtggc
ggcggtagcggcggcggtagccccccgccgccagcgtcgcccgttctgtcctccgcggcg
gccgcttccctggccttgatggctgcggacgacaaagcgatcgtcttcgacttcaagacg
atggctggcggccacctgcaggtgctgcatacggacacgaatatgaagaaggatgattcg
aagtcggaacttgactttgcaaacagcagcgagtacgagtggaggcacaggccgccccca
aggggcgtcagcaaccccgaggactacgcgctgtgccagaggttcctggagctgggctgg
tgcacgctggggccccagtgcgactgcgcgcattcggaggccgagctgggcgagtggagg
cggcggcacgccatccgtgccggcgcgcgcggcgatggtggcgccggcggcggcggcgag
atgccgtgcggggggcaggaggcggcgctcggatactcggagagcctcatcgagcgctgg
atgacggcgcccaatcccgaggcggtgctgagcgagtttgtggacggggtggacgtgagc
cactcgcaggacctgacgcttgctgtgagcagcaagagattcagcgccacctgggagttc
gcgctcgcgtgcaagccgccgcgctcgctgcagcgcgtggtgctgctctacgactcgcac
cgcccgcacttccacgtcgtctccgtggtgccgcgcgacgactccggcttcgacgccgcc
cccccgggcgactctggccgccctccgaccccgtgcggcggcggcggcgacgccgactcg
tccgccgccctccaccggccccccggcggcccctccgaggcctcgcagggcccggggcgg
cgaccggacggggcggccgacggcgtcgcggccggagcggtgggaggcaggcaggagtgg
gcggcgggcgacggcgatgacggaggaggaggaggagcgaggggagcgtaccgcgtgagc
gtggagttctccacggatgtgtacggcacgttccgccagacggtggtgttcgactttggc
tgctggcccgtgctggcgcgcagcctcactgtgcacacggccgacacgctggtgccgagc
gccgaggaagacctgcagctgctgtcgtgcgactggtgggacgccggcaacccgtcggtg
accatcgtggagttcggcgtgcccgtcggggtgcccgccgcgttgatccccgccgcgggc
tccgccgaggaggagggcggcgtgccgggccccacccagctgtaccgcgtgccggagctg
ccgctcggcctcttctccagcccggcgctgcagcggccgctgcgcgccgagaactaccgc
cggcgcttccacgacctgctctacatcgaggagctggcgcagtacaaggagatcagccgg
ttcaacatccgcgccgacctgcagctggtgcgcagctacatgctcacgggcacctcgggc
ggcgccaagtttgcgcagggcggcgagctcttcgcccgcttccgcctgggccgcagcctg
tcggaggacacggcgcacggccgcctgctcaccaccagcgtgggcaccgtgctcctgagg
cccgtgtcggtggcgcggcccggcgccgccggcgccaccgccgccatcgccacggacacg
acggaggaccacgacgcggccgctcggcggctgagcgaggacggctcgctggagattgag
gaggtcgtccggcaccatcaccacctgcagcagcagcatctgctgcagctgcagcagcag
cagcagcagcagcagcagcagcagaggcagcagatgaacgacaggggctggctggagaag
gcggcggcggtgccggcgatggtgccggcgatggtggaggatgaggagagcaggcgggcg
aggcgcttggggctcaaggtgtaccaggcgatgatcgaggagaagaccaaggaatacgtg
ttcctgcgcatctcgcgccagtgctgccaggagctggggctgcgcgccgaccagcagatc
aaggtggagctgcagttccagctgaaccggctgccgctgtgcgagatgcactacgccgtg
gatcgcatcccggagcccgctctgctcttccccgtcgtcgccaccccgcctgtcatcccc
tggggcccacacaggcagtgggacgaccagctggacccgcgtctcaacgccaagcagaag
gaggccgtcctggcggcgacgtcgccgctcgccgtgcccctgccgcccgtgctgctgctg
ggcccctacggcacgggcaagacgttcgcgctggcgcaggccaccaagcaggcgctcagg
cagcagcacacgcggatactcatctgcacgcattccaacagcgcggccgacctgtacatc
aaggactacctccacccgcacgtcgagagtggtaatcccgaggccagaccgctcagggtg
tactaccgtcaccgctgggtgaagagcgtgcacccggtggtgcagcagtactgcctcatg
tcgccctcgcgctccgagttcctgccgcccgtgcaggaggacgtcctcaagagccgcgtg
gtcgtcaccacgctcagcacgtcacgcacgctgtgccagctcaacctgcccgcgggcttc
ttcacgcacatcctcatcgacgaggcggcgcaggcgatggaatgcgagaccatcatggcg
ctcgccctcgccacgtgcgacacgcgcatcgtgctcgccggggaccacatgcaactgtcc
ccggtggtgcacagccggtttgcgcgcaagaaggggctccacctgtcgctgctggagcgc
ctctacgagctctacccgccggccttcccgtgccgcgtgctgctctgcgagaactaccgc
tcgcacaccgacatcgtcagcctcacgtcggagctgttctacgaggggaagctggcggcc
agcgggcgtcagccggcgcacggcgagctgcagccgctggcgttctacacggcgcgcggg
gaggccgtgcaggacaagaacagcaccgccttctacaacaacgccgaggtgtttgagctg
gtggagcgcgtggaggaggtgtgccgcaagtggcccgtggcgtgggggaagctgggcgag
ggcagcgtgggggtcgtgaccccgtacgccgaccaggtgttccgcatccgctcgcagctg
cgcaagaagcggctgtacgacgtcagcgtcgagcgcgtcctcaacgtgcaaggcaagcag
ttccgcgtgctcttcctgagcacggtacgcacgcggcacacgcggcgccacggcacggac
accggctccgtcgccgtcgcgccggcgctcgtcgtcacggcgacgggggaaggcgccgcc
gcgtccgccgagcagtgccgggacccgctggacgacctggacctgggcttcctgtccgac
cccaagctgctcaacacggccatcacgcgggcacagtcgctcctcgccgtcgtgggcgac
cccgtggcgctctgctcgctcgggaagtgcaggaagctgtgggagcgcttcatcggcgcg
tgccacgacagcggcagcctgcagggcaccacgctggagcagatccgcgcggagctggac
ggcgtggagctcaagaagtcgtacgtgctcaacccgctcgcgcccgagttcgtgccgcgg
gcgctgcgggccgccgccgccgccgcggccgccacttacttcccctcctcgccctccgga
ggaggtggcggaggtggaggaggtggaggagtaggaggtcagcacgcgtgggagcagctg
cacggaggactgcccgacgtgatcacgcacaagccgcactcgccctcacagggcaagagc
tccttccagaggcagagctcgcacggccaagccaatggccaagtcggtcagccgagccct
cccggaggatcgcgcgtcaacgccgtcaacgccgccaacgccgccgcaaacgccgccgcc
aacaccgccgccggggccctccccacggcctccccgctcgctcaggggccccagccgccc
tcccagcagttggggggtactcccgagggccccccgagccccctgcagcgtctggaggcg
cagggaggggcgggcagcttgctgtgcatgccccagcactctgggtacccgccgggcttc
ctgctgcccatgcccgtgtcgccctggcccaaccgcgtggccgttgacccgcggctgctc
gcgcagcaggcggccgcggtcgcctaccacctcaccctgctgcaggcgcagcagacgcgc
ggcgccggcgggggcacggcggcggcggcggcgtcggcgtcagcggcgacgtcgggcgcc
actcaggccgcccctcccacgacgccgtccgctgccgccctgccctaccctccctggggc
cacccgtcgtcggcggtggccgcggcggccacggcgggcgtcccgagccttccctgggcc
cagaatccgcagcagcagcagcaagtgctgggaaactctggcggatcggtgactccagat
ctggatcttcatgataaacagctgaagctgacggtagcagcaggtgaatctggcgctggc
tgcggtggctccgggcgccaccggcaaggagcccagaagcgcatgcagcaagcggacttc
tcgccgggtgcccgacgccacccggttcctcgctgttccagcagcagcagcagctggagc
agcacacggcagccgaattgcagcagcagcagcagcagcagcagcacaagtcgttga
DBGET
integrated database retrieval system
