KEGG   Lethenteron reissneri (Far Eastern brook lamprey): 133358826
Entry
133358826         CDS       T09663                                 
Name
(RefSeq) probable helicase with zinc finger domain
  KO
K25168  helicase with zinc finger domain [EC:5.6.2.-]
Organism
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:lrj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrj03019]
    133358826
Messenger RNA biogenesis [BR:lrj03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    Other 5'-3' decay factors
     133358826
   3'-5' decay
    Other 3'-5' decay factors
     133358826
SSDB
Motif
Pfam: AAA_12 AAA_11 AAA_30 zf-CCCH PAM2 AAA_19 Mov-10_helical UvrD-helicase AAA_22 ResIII AAA_16 AAA_5 AAA_7 MOV-10_Ig-like Helicase_RecD
Other DBs
NCBI-GeneID: 133358826
NCBI-ProteinID: XP_061433257
LinkDB
Position
63:6104464..6153257
AA seq 1258 aa
MAHRLSARAGRAAACWGDSQRGARGHGGHGGHGGSGGGGGGGSGGGSPPPPASPVLSSAA
AASLALMAADDKAIVFDFKTMAGGHLQVLHTDTNMKKDDSKSELDFANSSEYEWRHRPPP
RGVSNPEDYALCQRFLELGWCTLGPQCDCAHSEAELGEWRRRHAIRAGARGDGGAGGGGE
MPCGGQEAALGYSESLIERWMTAPNPEAVLSEFVDGVDVSHSQDLTLAVSSKRFSATWEF
ALACKPPRSLQRVVLLYDSHRPHFHVASVVPRDDSGSDAAPPGDSGRPPTPCGGGDDADS
SAALHRPPSGPSEASQGPGRRPDRAADGVASGAAGGRQEWAAGDGDDGGGGGARGAYRVS
VEFSTDVYGTFRQTVVFDFGCWPVLARSLTVHTADTLVPSAEEDLQLLSCDWWDAGNPSV
TIVEFGVPVGVPAALIPAAGSAEEEGGVPGPTQLYRVPELPLGLFSSPALQRPLRAENYR
RRFHDLLYIEELAQYKEISRFNIRADLQLVRSYMLTGTSGGAKFAQGGELFARFRLGRSL
SEDTAHGRLLTTSVGTVLLRPVSVARPGAAGATAAIATDTTEDHDAAARRLSEDGSLEIE
EVVRHHHHLQQQHLLQLQQQQQQQRQQMNDRGWLEKAAAVPAMVPAMVEDEESRRARRLG
LKVYQAMIEEKTKEYVFLRISRQCCQELGLRADQQIKVELQFQLNRLPLCEMHYAVDRIP
EPALLFPVVATPPVIPWGPHRQWDDQLDPRLNAKQKEAVLAATSPLAVPLPPVLLLGPYG
TGKTFALAQATKQALRQQHTRILICTHSNSAADLYIKDYLHPHVESGNPEARPLRVYYRH
RWVKSVHPVVQQYCLMSPSRSEFLPPVQEDVLKSRVVVTTLSTSRTLCQLNLPAGFFTHI
LIDEAAQAMECETIMALALATCDTRIVLAGDHMQLSPVVHSRFARKKGLHLSLLERLYEL
YPPAFPCRVLLCENYRSHTDIVSLTSELFYEGKLAASGRQPAHGELQPLAFYTARGEAVQ
DKNSTAFYNNAEVFELVERVEEVCRKWPVAWGKLGEGSVGVVTPYADQVFRIRSQLRKKR
LYDVSVERVLNVQGKQFRVLFLSTVRTRHTRRHGTDTGSVAVAPALAVTATGEGAAASAE
QCRDPLDDLDLGFLSDPKLLNTAITRAQSLLAVVGDPVALCSLGKCRKLWERFIGACHDS
GSLQGTTLEQIRAELDGVELKKSYVLNPLAPEFVPRALRAAAAAAAATYFPSSPSAGR
NT seq 3774 nt   +upstreamnt  +downstreamnt
atggcgcaccggctctcggcccgcgctggccgggcagcggcgtgctggggagacagccag
cggggggcccggggacacggaggccacgggggccacgggggctccggcggcggcggtggc
ggcggtagcggcggcggtagccccccgccgccagcgtcgcccgttctgtcctccgcggcg
gccgcttccctggccttgatggctgcggacgacaaagcgatcgtcttcgacttcaagacg
atggctggcggccacctgcaggtgctgcatacggacacgaacatgaagaaggatgattcg
aagtcggaacttgactttgcaaacagcagcgagtacgagtggaggcacaggccgccccca
aggggcgtcagcaaccccgaggactacgcgctgtgccagaggttcctggagctgggctgg
tgcacgctggggccccagtgcgactgcgcgcattcggaggccgagctgggcgagtggagg
cggcggcacgccatccgtgccggcgcgcgcggcgatggtggcgccggcggcggcggcgag
atgccgtgcggggggcaggaggcggcgctcggatactcggagagcctcatcgagcgctgg
atgacggcgcccaatcccgaggcggtgctgagcgagtttgtggacggggtggacgtgagc
cactcgcaggacctgacgcttgctgtgagcagcaagagattcagcgccacctgggagttc
gcgctcgcgtgcaagccgccgcgctccctgcagcgcgtggtgctgctctacgactcgcac
cgcccgcacttccacgtcgcctccgtggtgccgcgcgacgactccggctcagacgccgcc
cccccgggcgactctggccgccctccgaccccgtgcggcggcggcgacgacgccgactcg
tccgccgccctccaccggccccccagcggcccctccgaggcctcgcagggcccggggcgg
cgaccggacagggcggccgacggcgtcgcgtccggagcggcgggaggcaggcaggagtgg
gcggcgggcgacggcgatgacggaggaggaggaggagcgaggggagcgtaccgcgtgagc
gtggagttctccacggatgtgtacggcacgttccgccagacggtggtgttcgactttggc
tgctggcccgtgctggcgcgcagcctcactgtgcacacggccgacacgctggtgccgagc
gccgaggaagacctgcagctgctgtcgtgcgactggtgggacgccggcaacccgtcggtg
accatcgtggagttcggcgtgcccgtcggggtgcccgccgcgttgatccccgccgcgggc
tccgccgaggaggagggcggcgtgccgggccccacccagctgtaccgcgtgccggagctg
ccgctcggcctcttctccagcccggcgctgcagcggccgctgcgcgccgagaactaccgc
cggcgcttccacgacctgctctacatcgaggagctggcgcagtacaaggagatcagccgg
ttcaacatccgcgccgacctgcagctggtgcgcagctacatgctcacgggcacctcgggc
ggcgccaagtttgcgcagggcggcgagctcttcgcccgcttccgcctgggccgcagcctg
tcggaggacacggcgcacggccgcctgctcaccaccagcgtgggcaccgtgctcctgagg
cccgtgtcggtggcgcggcccggcgccgccggcgccaccgccgccatcgccacggacacg
acggaggaccacgacgcggccgctcggcggctgagcgaggacggctcgctggagattgag
gaggtcgtccggcaccatcaccacctgcagcagcagcatctgctgcagctgcagcagcag
cagcagcagcagaggcagcagatgaacgacaggggctggctggagaaggcggcggcggtg
ccggcgatggtgccggcgatggtggaggatgaggagagcaggcgggcgaggcgcttgggg
ctcaaggtgtaccaggcgatgatcgaggagaagaccaaggaatacgtgttcctgcgcatc
tcgcgccagtgctgccaggagctggggctgcgcgccgaccagcagatcaaggtggagctg
cagttccagctgaaccggctgccgctgtgcgagatgcactacgccgtggatcgcatcccg
gagcccgctctgctcttccccgtcgtcgccaccccgcctgtcatcccctggggcccacac
aggcagtgggacgaccagctggacccgcgtctcaacgccaagcagaaggaggccgtcctg
gcggcgacgtcgccgctcgccgtgcccctgccgcccgtgctgctgctgggcccctacggc
acgggcaagacgttcgcgctggcgcaggccaccaagcaggcgctcaggcagcagcacacg
cggatactcatctgcacgcattccaacagcgcggccgacctgtacatcaaggactacctc
cacccgcacgtcgagagtggtaatcccgaggccagaccgctcagggtgtactaccgtcac
cgctgggtgaagagcgtgcacccggtggtgcagcagtactgcctcatgtcgccctcgcgc
tccgagttcctgccgcccgtgcaggaggacgtcctcaagagccgcgtggtcgtcaccacg
ctcagcacgtcacgcacgctgtgccagctcaacctgcccgcgggcttcttcacgcacatc
ctcatcgacgaggcggcgcaggcgatggaatgcgagaccatcatggcgctcgccctcgcc
acgtgcgacacgcgcatcgtgctcgccggggaccacatgcaactgtccccggtggtgcac
agccggtttgcgcgcaagaaggggctccacctgtcgctgctggagcgcctctacgagctc
tacccgccggccttcccgtgccgcgtgctgctctgcgagaactaccgctcgcacaccgac
atcgtcagcctcacgtcggagctgttctacgaggggaagctggcggccagcgggcgtcag
ccggcgcacggcgagctgcagccgctggcgttctacacggcgcgcggggaggcggtgcag
gacaagaacagcaccgccttctacaacaacgccgaggtgtttgagctggtggagcgcgtg
gaggaggtgtgccgcaagtggcccgtggcgtgggggaagctgggcgagggcagcgtgggg
gtcgtgaccccgtacgctgaccaggtgttccgcatccgctcgcagctgcgcaagaagcgg
ctgtacgacgtcagcgtcgagcgcgtcctcaacgtgcaaggcaagcagttccgcgtgctc
ttcctgagcacggtacgcacgcggcacacgcggcgccacggcacggacaccggctccgtc
gccgtcgcgccggcgctcgccgtcacggcgacgggggagggcgccgccgcttccgccgag
cagtgccgggacccgctggacgacctggacctgggcttcctgtccgaccccaagctgctc
aacacggccatcacgcgggcacagtcgctcctcgccgtcgtgggcgaccccgtggcgctc
tgctcgctcgggaagtgcaggaagctgtgggagcgcttcatcggcgcgtgccacgacagc
ggcagcctgcagggcaccacgctggagcagatccgcgcggagctggacggcgtggagctc
aagaagtcgtacgtgctcaacccgctcgcgcccgagttcgtgccgcgggcgctgcgggcc
gccgccgccgccgcggccgccacttacttcccctcctcgccctccgccgggagg

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