Lethenteron reissneri (Far Eastern brook lamprey): 133360224
Help
Entry
133360224 CDS
T09663
Name
(RefSeq) spliceosome RNA helicase Ddx39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03013
Nucleocytoplasmic transport
lrj03015
mRNA surveillance pathway
lrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133360224
09122 Translation
03013 Nucleocytoplasmic transport
133360224
03015 mRNA surveillance pathway
133360224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133360224
03041 Spliceosome [BR:
lrj03041
]
133360224
Enzymes [BR:
lrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133360224
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133360224
Spliceosome [BR:
lrj03041
]
Complex C
Other components
EJC/TREX
133360224
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133360224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
133360224
NCBI-ProteinID:
XP_061434843
LinkDB
All DBs
Position
67:complement(8175583..8192813)
Genome browser
AA seq
427 aa
AA seq
DB search
MAENDVENELLDYEDDEENVVAAEATEAPVKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPTDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALSR
NKTLNLKHVKHFILDECDKMLEQLDMRRDVQDIFRMTPHEKQVMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLIEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVSELPDEIDLS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgacgttgagaacgagctcttggactacgaggacgacgaggagaatgtg
gtggcggccgaggcgacggaggcgcccgtcaagaaggaggtgaagggctcctacgtctcc
atccacagctccggcttccgggacttcctgctcaagccggagctgctgcgggcaatcgtc
gactgcggctttgagcacccgtccgaggtgcaacacgagtgcatcccccaggccattctg
ggcatggacgtgctgtgccaggccaagtcgggtatgggcaagacggccgtgttcgtgctg
gccaccctgcagcagctggagcccaccgatggacaggtgtcggtgctggtgatgtgccac
acccgtgagctcgccttccaaatcagcaaggagtacgagcgcttctcaaagtacatgcct
accgtgaaggtggccgtgttcttcggagggttgtccatcaagaaggacgaggaggtgctg
aagaagaactgccctcacatcgtggtggggacaccgggccgcatcctggccctgtccagg
aacaagaccctgaacctgaagcacgtgaagcacttcatcctggacgagtgcgacaagatg
ctcgagcaactcgacatgcggagggacgtgcaggacatcttccgcatgacccctcacgag
aagcaggtcatgatgttcagcgccactctaagcaaggagattcgccccgtctgtcgcaag
ttcatgcaagatcctatggaggtgtttgtggacgacgagacgaagctgacgctgcacggg
ctgcagcagtactacgtgaagctgaaggacaacgagaagaaccgcaagctcttcgatctg
ctcgacgtgctcgagtttaaccaggtggtgatcttcgtaaagtcggtgcagcgctgcatg
gctctggcgcagctgctgattgagcagaacttcccggcaatcgccattcaccgtggcatg
gcgcaagaggagaggttgtcgcgttaccagcagttcaaggacttccagcggcgcatcctc
gtggccacgaacctctttggccgtggcatggacatcgagcgagtcaacatcgtgttcaac
tacgacatgcctgaggactctgacacgtacctgcacagggtcgcccgtgccggtcggttc
ggcaccaagggactggcggtgacgtttgtgtcggacgagaacgacgccaagatcctcaac
gacgtgcaggatcgcttcgaggtcaacgtcagcgagctgcccgacgagatcgacctctcc
tcctacattgaacagagcagatga
DBGET
integrated database retrieval system
