Lethenteron reissneri (Far Eastern brook lamprey): 133361244
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Entry
133361244 CDS
T09663
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133361244 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133361244 (SMG7)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133361244 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
133361244 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
133361244
NCBI-ProteinID:
XP_061436131
LinkDB
All DBs
Position
71:3990272..4049788
Genome browser
AA seq
1292 aa
AA seq
DB search
MGDCALCLRQAEALKADMADGSLSAADVWTSRQNLQDVYQKMLLTDLEYALDKKVEQDLW
NYAFKNQISSLQGQAKNRANPNRGEVQTNLGLFLEAASGFYTQLLQELCVVFEVDLPCRV
RSSQLGLGIGPPPPMEPAIVKPQPNSCLYICQHCLVHLGDIARYRNQISQAESYYRHAAQ
LVPSNGQPYNQLAILASSRGDHLTTIFYYCRSIAVRFPFPAAGTNLSKALSKAIEGREEP
KVKIGLLDFLKLFIRFHAHVYLGKSLDRLVTLSHKLEEAFKGLLAVRALSAQQLVHLVVV
TLFQMHHLREGGGGGAVEEQQPEAEQQQQHDGDDDDDETRWTNALTLYSALLDGLCRYAV
LPANEEVRAPSALPAVKVALEWLGARPVVVEHRALQQHCQLWPSLARLLNSLQSAPNDLD
GTDAQSSAPLPEEFELQGFLALKCDTRALEFTRGHQGVATEKDGLQQRVRRFRICALGRR
LALAHPSVLQCTIENGLLKFSSPVPEMIVDDVLSRAAVATTTTPPPIPAAAVVVAEEEED
EEEERDEDGRGTTAPAPADDDAEAKRETPAAPLTATPRHRGPTGASPDVPESLETPDVAS
RSPFSKPWGSSIHSPALGRDRGETEGGRVVVVCERAGGGGGHSPRFDLPWAESRRRCGGD
TRRHNVAVQKAVPQPAPPLVAEHQKPQPVQPGLGPLASAPVPPTVAFPPAPPLPSTLHAP
GSFPALPGRPDHPAQPFAMPLPQQQQPAPASAVSLSYPVVPGFPYSAGSGAGAPTGTAPL
LAPFMQAPPGAHSPTGKPSHVPYSQQRVAGTVGNGAAAAAAALAAAAAVVAPPPHSPGAG
RAGSPAVQSLADSQAQNWPHYGGKTLHPLSMQQQQLVQQQQQQHLVQQHLAQQQQLQQQQ
HQLFQKSPLVNLLSQIANLHHQQQQHPLHHQQQVDKSAGRMKTYGTRLGVTEPPCDSSSR
PCVWESAYGLSGQWGVPLQQGSGQPGHGGMKPPSMDMDTYDVRAMESERETLVGASTNAV
GGGGGGGRPDFCQAPGAPVVKTNFMGGRMRQDQSPERQGMPAPFPTSFGGGGGGGGTAFT
QMHTVFSEPYGKRGEGGMGLTSNSCSSSASSSCRPSLLSDISRPYTLFDSNSWSPAFGNS
EHSTPASQSPQSSQPSSPPPPSSMFGPIGTLDPTDRRATTSATADRWNGKRPEKPGAASG
YGLDYLPSDATWPPPPRVLPSQALHATSRGGGGGAAPWMGVQHASEPPPSLADNLKSLWS
NSVMQPGPLALEQLLMQQKQKQFNLGQSNPPH
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgggcgactgcgcactgtgtttacggcaagcggaggcgttgaaggcggacatggcggat
ggctcgttgagcgccgctgacgtgtggacgtcccgccagaacctgcaggacgtctaccag
aagatgctgctcactgacctggagtacgcgctcgacaagaaggtggagcaggacctgtgg
aactacgccttcaaaaaccagatcagcagcctccaaggccaggcgaagaacagagctaac
cccaaccgtggggaggtgcagaccaacctggggctcttcctggaggcggccagtggcttc
tacacacagctgctgcaggagctgtgcgtggtgtttgaggtggacctgccctgccgcgtt
cgctcctcccagctgggcctgggtatcggaccgccgccgcctatggagccggccatcgtg
aagccgcagcccaactcctgcctctacatctgccagcactgcctcgtccacctgggagac
atcgctcgttaccgcaaccaaatcagccaggcggagtcatactacaggcacgctgcgcag
ctggtgccttctaatggccagccgtacaatcagctggcgatcctggcatcgtcgcgcgga
gaccacctcaccaccatcttctactactgccggagcatcgctgtgcgcttccccttcccg
gcggccggcaccaacctcagcaaggccctgtccaaggccatcgaggggagggaggaaccc
aaggtgaagattgggctgctggattttctgaagctgttcatccgcttccacgctcacgtc
tacctgggcaagagcctggaccgcctcgtcacgctcagccacaagctggaggaggcgttc
aaggggctgctggccgtcagggcgctctctgcccagcagctggtgcacctggtggtggtg
acgctcttccagatgcaccacctgcgtgagggtggcggcggcggcgccgtcgaagagcag
cagcccgaggccgagcagcagcagcagcacgatggtgacgacgacgacgatgagacgcgg
tggacaaacgcgctcacactctacagcgccctgctggacgggttgtgccgctacgcggtg
ctgccggccaatgaggaggtgcgggcgccgtcagcgctgccggccgtgaaggtggcgttg
gagtggctgggggcccgtccggtggtggtggagcaccgagcactgcagcagcactgccag
ctatggcccagtttggcgcggcttctcaacagcctccaatcggcaccaaacgacctcgac
ggcaccgacgcccagtccagtgcccccctgccagaggaatttgagctgcagggcttcctg
gctctcaagtgcgacacgagggctctggagttcacgcggggtcaccagggcgtggccacg
gagaaggacggcctgcagcagcgcgtacgccgcttccgcatctgcgccctgggcaggagg
ctcgcgctggcgcaccccagcgttctgcagtgcaccattgagaacgggctgctcaagttc
agctcgcccgtgcccgagatgatcgtggacgatgttctgtcgcgggcggcggtggcgacg
acgacgacgccgccgccaataccggcggcggcggtggtggtggcagaggaggaggaagat
gaggaggaggagagggacgaggacgggaggggcacgacggcgccagcccctgcggacgac
gatgccgaggccaagcgggagactccggcggcccctctgacggccacgccgcgacaccgg
ggaccgacgggcgcctcgccggacgtcccggagagcctcgagacccccgacgtcgccagc
agaagccctttcagcaagccttggggctccagcatccactcgccggcactgggcagagac
cgcggggagacggagggcggcagggtggtggtggtgtgtgagcgagccggaggaggaggc
ggacacagcccccggtttgacctgccctgggcagagtcgaggcggcgctgtggcggagac
acgcgcagacacaacgtggccgtgcagaaggctgtgccgcagcctgctcctccgctggtg
gcggaacaccagaagcctcagccggtgcagccgggcctgggacccctggcttcggcaccg
gttccccccacggtggcgttcccaccagcaccgccgctgccatctacactgcacgcgccg
ggcagcttcccggccctgccagggcgaccggaccacccggcccagcccttcgcaatgcca
ctgccgcagcagcagcagccggcgccggcgtcggcagtgtcgctctcctacccggtggtg
cccggtttcccctacagcgccggcagtggggccggggcaccgaccggaacggctccgttg
ctggcgccattcatgcaggcgccgccgggtgcccacagcccgacggggaagccgtcgcac
gttccctacagccagcagcgcgtggccggcaccgtagggaacggggcggcggcggctgcc
gctgcgttggcggcggccgcggccgtggtggccccgccaccgcactcccccggtgcggga
cgcgctggctccccggccgtgcagtccctggccgacagccaagctcagaactggccccat
tatggcgggaagactttacacccactctccatgcagcagcagcagttggttcaacagcag
cagcagcagcacttagtgcaacagcaccttgctcagcaacagcagctgcagcagcaacag
catcagctctttcaaaagagccctctggttaatctgctgtcgcagatcgcaaaccttcac
catcagcagcagcagcatccacttcatcaccagcagcaggtggataaatcggcagggcgg
atgaagacgtacggcacgcggctcggggtgacggagccgccctgcgactcctccagcagg
ccctgcgtctgggagtccgcctacgggctttccgggcagtggggggtgcccctgcagcag
gggtcgggccagcccggccacggcggcatgaagccgccgtcgatggacatggacacgtac
gacgtgcgggccatggagagcgagcgcgagaccttggttggcgccagcaccaacgccgtg
ggtggcggcggcggcggtgggcgtcccgacttctgccaggcgccaggagctcccgtggtc
aagacgaacttcatggggggacggatgcggcaggaccagtctcccgagcgccaagggatg
ccggctcccttcccaacatcgtttgggggtggcggcggcggtggcggcaccgcgtttacg
cagatgcacaccgtcttcagtgagccatacggcaagcgtggtgagggcggcatgggcctc
acctccaactcctgctcctcatcggcatcctcgtcatgccggcccagcctcctctccgac
atctcgcgcccgtacacgctgttcgactccaattcctggtcgccagcattcggcaactcc
gagcactccaccccggcgagccagtcaccccagagctcccaacccagctcccctccgccg
ccctcctccatgtttgggccgatcggcaccctggatcccacagaccgccgggctaccacc
tccgccaccgccgaccgctggaacgggaagaggccagagaagccaggagcggcgagtggc
tacgggctggattacctcccatcggacgccacgtggcccccacctccacgcgtcctccca
tctcaggcgctgcacgcgacatcccgtggtggcggcggcggtgccgcgccatggatgggt
gtccaacacgccagcgagcctcctcccagccttgctgacaacctcaagtcgctgtggtcg
aactcggtgatgcaaccggggccgctggcgctggagcagctgctgatgcagcagaagcag
aagcagttcaacctgggccagtccaaccctccacactga
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