Lacticaseibacillus rhamnosus Lc 705: LC705_00318
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Entry
LC705_00318 CDS
T00990
Symbol
srmB
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lrl
Lacticaseibacillus rhamnosus Lc 705
Pathway
lrl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LC705_00318 (srmB)
09124 Replication and repair
03420 Nucleotide excision repair
LC705_00318 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrl03021
]
LC705_00318 (srmB)
03036 Chromosome and associated proteins [BR:
lrl03036
]
LC705_00318 (srmB)
03400 DNA repair and recombination proteins [BR:
lrl03400
]
LC705_00318 (srmB)
Enzymes [BR:
lrl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LC705_00318 (srmB)
Transcription machinery [BR:
lrl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LC705_00318 (srmB)
Chromosome and associated proteins [BR:
lrl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LC705_00318 (srmB)
DNA repair and recombination proteins [BR:
lrl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LC705_00318 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD
DEAD_2
ResIII
PDDEXK_1
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
CAR89157
LinkDB
All DBs
Position
complement(317434..319818)
Genome browser
AA seq
794 aa
AA seq
DB search
MAHNRIGIREFVELTVRTGDLNPVTSNSNNTAMIGSQIHRKLQAAHRKSDYEKEVYLKTT
VTVNDEDYQLEGRADGVWTENKTLTVEEIKTSARSWEECSQNTKDRYWAQARIYGHLLCQ
QRHQDHAVITLVYVQTSTDTVSRFTETKSAAELADDFTDLLDEFTAWLKLRSDIIKQRNA
SIATLKFPFPQYRTGQHEFAAAVYKAIYSRARLFVQAPTGTGKTISTLFPTIKAMGSGLI
QRAFYLTAKQSTRRVAEQAMALMADAGLRAKSITLTAKDTITFADEPDDPSQNPYMLGYY
DRLKPALHDLLEHEDRLTRSVIEAYARKHTLDPFEFSLDASLFCDVVICDYNYLFNPLVF
LQRFFSEADDSQFFLVDEAHNLVSRARDMYTASLTNQDFIDLKQALTPFKGAALTKVRRT
MTRIVTTMNTLADQLLNGQSLIFQAAPLDDLTQVLTRFTETVHDWLAEPPTPALQPAVEL
VLPVFFLANQYLRIGDFYDDTFKTEIAKEHDTIMIKMLCLDPSHFVDDALKKGRGTVLFS
ATLSPMPYFQKLLGGAEHSLAYTLPSPFTPDNQAVIVDASVHTTYRRRAQDLPPLIASLT
TLVRAEAGHYLFFFPSYAYLKMAYEAFTAANPDLKTCVQENAMNESERQAFLDHFKAGSE
PVIGFAVLGGIFAEGIDLKGTQLIGVAIVSVGLPGINPETDQLRAYFDHNAGQGFAYAYQ
LPGFNNVLQAGGRVIRGAKDVGVILLIDERFITPRYARLFPDHWTHAQISYNPTQLAQLL
THFWEAHHENPTHA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggctcataaccgtatcgggattcgcgaatttgtcgagttaaccgttcgtaccggtgat
ctaaatccggttaccagtaactcaaataacaccgccatgatcggcagccagattcaccgc
aaacttcaagcagcgcatcggaagtcggattatgaaaaagaagtctatttaaaaaccacc
gttaccgtcaatgacgaggattatcaactagaaggccgtgccgatggggtttggaccgaa
aacaagacgctaaccgttgaagaaattaaaactagtgcccgttcatgggaagaatgttcg
caaaacacgaaggatcgctactgggcgcaggcacggatttatggtcacctgctttgccaa
cagcggcatcaagaccatgccgttatcaccttggtttatgttcaaaccagtaccgacaca
gtcagccgcttcactgaaacaaaaagtgccgccgagttagccgatgatttcaccgattta
cttgatgaattcactgcctggttaaaactgcgcagcgatattattaaacagcgaaatgct
tctatcgccacgctcaagtttccgtttccgcagtaccgcactggccagcacgagttcgct
gccgctgtttacaaagccatatacagccgcgcgcgtttgtttgtgcaggcgcccaccggt
accggcaaaaccatttcaacgcttttcccgaccattaaagccatgggtagtgggttgatt
cagcgcgctttttatctgacagccaagcaaagtacacgtcgggtggcggaacaggcaatg
gcgctgatggcagacgccggacttagagccaaaagcatcaccttaacggctaaagacacg
attaccttcgccgatgagcccgatgaccctagtcaaaatccctatatgcttggctattat
gatcgcctgaaacccgcactgcatgatcttttggaacatgaagatcgactcacccgatct
gtgattgaagcctatgctcgcaaacacacactggatccatttgaattttcgctagatgcc
agtttgttttgtgatgtggtgatttgcgactataattatttattcaatcccttggttttt
ttgcagcgattctttagtgaagcagatgacagtcagtttttcttggttgatgaagcgcac
aaccttgtcagccgggcgcgcgatatgtataccgcaagtctgaccaatcaggactttatc
gacctcaaacaagccctcaccccgttcaaaggagccgcattaaccaaagtacgccggacg
atgacgcgaattgtcaccacgatgaataccttggctgatcagctactcaacgggcagtca
ctgatctttcaagcagcaccgctcgatgacttgacgcaggtgctaacgcggtttaccgaa
acggttcacgactggctggcagaaccgcccacccccgcgttgcagcctgctgtcgaactt
gttttaccagtgttttttctcgctaatcagtatttacgcattggtgatttttatgacgat
accttcaaaaccgagattgccaaggaacatgacacgattatgattaaaatgctctgtctg
gacccgtcccattttgtcgatgatgccttgaaaaaaggccgaggcacggttttattttca
gcaaccttgtccccgatgccgtatttccaaaagttactgggaggcgctgaacatagcctt
gcttacaccttgccatcaccgtttacgccggacaatcaggccgtcattgtcgatgcgagt
gtccacaccacgtaccgccgccgcgcgcaggatttaccgccgctgatcgcaagtctcacc
acgctggtcagggctgaagccgggcattatcttttcttttttccatcctatgcctatctg
aaaatggcatacgaggcgtttactgcagcaaatcccgatcttaaaacctgtgttcaggaa
aatgccatgaatgaaagtgagcggcaagcatttcttgatcactttaaggctggtagtgag
ccggtgattggttttgctgtgcttggcggcatttttgctgaagggattgacctcaaaggg
acgcaattgattggggtggcgattgtgtcagtgggcttaccggggatcaatccggaaacc
gatcagttgcgggcttattttgatcacaatgctggtcagggctttgcctatgcctatcag
ctgccaggctttaacaatgtcttgcaggcaggtggccgggtgattcgcggagccaaggat
gtcggcgtgatcctgctgattgatgaacgctttatcaccccgcgttatgcccgtctgttt
cctgatcactggacccacgcccagattagctacaatcccacgcaattagcgcaattactg
acacacttttgggaggcccatcatgaaaacccaactcacgcgtga
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