Ligilactobacillus ruminis: LRC_02600
Help
Entry
LRC_02600 CDS
T01626
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRC_02600 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrm03021
]
LRC_02600 (rpoB)
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_02600 (rpoB)
Enzymes [BR:
lrm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRC_02600 (rpoB)
Transcription machinery [BR:
lrm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRC_02600 (rpoB)
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRC_02600 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AEN77580
UniProt:
G2SQV6
LinkDB
All DBs
Position
288164..291811
Genome browser
AA seq
1215 aa
AA seq
DB search
MQIGLASSDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWECACGKYKKVS
YKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDMSPRALEEVI
YFASYVVTDPGDSPLEKKQLMTEGEYREKRQEYGQSFKAAMGAEAIRTLLRDVDLEKECA
ELKEELKEATGQKRTRAVRRLDILEAFLSSGNSPEWMVMDAIPVIPPDLRPMVQLEGGRF
ATSDLNDLYRRVINRNNRLKRLLELHAPGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPKLKLNQMGIPHEMALELFKPF
MMHELVKRGMASNIKNAKRKIDRRDDDIWDVLEDVIKEHPVLLNRAPTLHRLGIQAFEPT
LVDGKAMRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHILAPKDGKPII
SPSQDMTIGNYYITIEEANREGEGMIFKDVNEVRTAYQNNYVHLHTRIGLQTSSLAEAGK
PFTDFQKGRILVTTAGKAIFNEILPDDFPYLNEPSEENLTVGTPDKYFLEPGEDIHEYLK
NHELVGPFKSGFLSDIIAQVYKDYKVTATAELLDRMKDLGYYESTKSGLTVGIADVTDLK
EKPEIIDNAHKEVANVAKQFRRGLITEDERYNRVIAIWNEAKDKIQAKLIENMDPSNPIQ
MMSDSGARGNISNFTQLAGMRGLMAAPNGKTMELPVIANFREGLSVMEMFISTHGARKGM
TDTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGLDVTAIREGNEMIEPLYDRILGRY
TMKSVKDPKTGEVIVPANVMMDEELAQKVVDAGVEQVTIRSAFTCNTRHGVCEHCYGRNM
ATGDEVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEIFEARNPKG
RATITEVTGIVESVEENPAERTKVVTVKGDTDERTYNIPFTAVLKVAEGDSVHRGDPLTV
GSIDPKELIKVRDVLSTENYILREVQKVYRMQGVEISDKHIEVMARQMLRKVRIMDPGNT
NMLPGTLLDLNDFKDNNVETLVNGGIPATARPVLLGITKASLETNSFLSAASFQETTRVL
TDAAIRGKNDPLVGLKENVIIGKIIPAGTGMKKYRDIVPEEDAPAKVASGVYSLKDDGVS
TLEDVAKANNLNSED
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgcaaataggtctggcttcatccgataagatccgcagctggtcttacggtgaagttaag
aagcctgaaacaatcaactatcgtacgttgaaaccagaaaaagacggtctgttcgatgaa
cgaatttttggaccaacaaaagactgggaatgtgcttgcggcaagtacaagaaagtcagc
tacaagggcattgtctgcgatcgttgcggcgttgaagttactcgttcaaaagttcgtcgt
gaacgtatgggtcatattgaacttgcagcaccggtaacgcacatttggtatttcaaaggg
attccaagtcgcatgggtcttgtgcttgacatgagtcctcgcgcccttgaagaagtaatc
tactttgcttcttacgttgttactgatccgggtgattcgccccttgaaaagaaacaactc
atgaccgaaggcgaatatcgcgaaaagcgccaggaatacggtcagtcatttaaggccgca
atgggtgccgaagcaattcgcactttgcttcgagatgttgatcttgaaaaagaatgtgca
gaacttaaggaagaattgaaagaagctacgggtcaaaaacgtacacgcgccgtacgtcgt
ttggatattttggaagcatttttgagctccggcaacagtcctgaatggatggtcatggat
gcgattcctgttatcccgcctgatcttcgcccaatggttcaattggaaggcggacgtttt
gctacttctgatctgaacgatttgtatcgtcgcgtcatcaaccgtaacaatcgtttgaaa
cgtctgcttgaacttcatgcacctggcatcattgttcaaaatgaaaagcgtatgctgcag
gaagctgtcgacgctttgattgataacggtcgtcgcggtcgtcccgttacgggtcccggc
aatcgtcccctcaagtcattgtcgcacatgcttaaaggtaaacaaggtcgtttccgtcaa
aaccttcttggtaagcgtgtcgattattcaggacgttctgttatcgacgttggtcctaag
cttaagcttaaccaaatgggcattcctcacgaaatggcgcttgaattgttcaagccgttc
atgatgcatgagctcgtaaaacgcggaatggcatcaaacattaagaatgccaagcgaaag
attgatcgacgcgacgacgacatctgggatgttttggaagacgttatcaaagaacatccg
gttctgttgaaccgtgcccctacgctccaccgtttgggaattcaggcctttgagccaacg
cttgtcgacggaaaagccatgcgtcttcatccgcttgcctgcgaagcttacaacgccgat
tttgacggtgaccaaatggccatccacgttccgttgtcagatgaagctcaggctgaagca
cgtttgctgatgcttgctgctcaccatattttggcgcctaaagatggtaagccaatcatt
tcgccatctcaggatatgacgatcggtaactactatattacgattgaagaagcaaatcgt
gaaggcgaaggcatgattttcaaagacgtcaacgaagtcagaaccgcataccaaaacaac
tatgttcacttgcatacgcggatcgggttgcagacatcttcattggcagaggcaggcaag
ccgtttactgatttccaaaaagggcgcatcctcgtaacgactgccggcaaggcaatcttc
aatgagatcttgcctgatgattttccatacttgaacgaaccttctgaagaaaacttgact
gttggtactcctgacaagtacttcctcgaacctggcgaagacattcatgaatacttgaag
aaccatgaacttgtcggaccgttcaaatcaggcttcttgtcagatatcattgcgcaagtc
tacaaggattacaaagttacggcgactgcggaacttttggacagaatgaaggatttgggc
tattacgagtcaacgaagtcaggtttgactgtcggaattgccgacgttactgatttgaag
gaaaagcctgaaatcatcgacaatgcccacaaggaagttgccaacgtcgcaaaacagttc
cgtcgcggtttgattacggaagacgaacgctacaaccgtgttatcgctatttggaatgaa
gcaaaagataagattcaagccaaactgattgaaaacatggatccttccaaccctatccaa
atgatgagtgattccggtgctcgtggcaacatctcgaactttacgcagcttgccggcatg
cgtggcttgatggccgctcctaacggcaagacgatggaacttcctgttattgccaacttc
cgtgaaggcttgtcagtgatggaaatgttcatttcgactcacggtgctcgtaagggtatg
accgatacggctctgaagactgccgattccggttacttgacacgtcgtcttgttgacgtt
gctcaagatgtcatcattcgtgaaactgattgcggaacggaccgcggccttgacgtaact
gcaattcgtgaaggaaacgaaatgattgaaccgctctatgatcgtattcttggtcgttac
acaatgaagtccgtcaaggatcctaagacaggcgaagtcatcgttcctgccaacgtgatg
atggatgaagaacttgcacaaaaggttgttgatgcaggtgtagagcaagttacgattcgt
tctgccttcacgtgcaacacgcgtcacggtgtctgcgaacattgctatggtcgcaacatg
gccaccggcgacgaagttgaagtcggtgaagccgtcggtacagtggctgctcagtcaatc
ggtgaacccggtactcagttgacgatgcgtacgttccacactggtggtgttgccggtgac
gatattacgcaaggtcttcctcgtgttcaggaaatttttgaagcacgcaatcctaaaggt
cgtgcgacgattactgaagttactggtatcgtcgaaagcgttgaagaaaatccggcagaa
cgtacgaaagtcgttacggtcaagggcgatacggatgaacgcacgtacaacattccgttt
acggccgtgcttaaggttgctgaaggcgacagcgtgcaccgtggcgatccgttgacggtc
ggttcaatcgatccgaaggaattgatcaaggttcgtgacgttctttcaaccgaaaactac
attttgcgtgaagttcaaaaggtttaccgtatgcaaggtgttgaaatttctgataagcat
atcgaagttatggctcgtcaaatgctcagaaaagttcgcatcatggatcctggcaacacg
aacatgctccctggtacgttgcttgatctcaacgacttcaaggacaacaacgttgaaaca
cttgttaatggcggaattccggcaacggcacgtcccgttcttcttggaattacgaaggct
tccttggaaacaaacagtttcttgtctgctgcttcattccaggaaacaactcgtgtcttg
acggatgctgcaatccgcggcaagaacgatccgttggttggccttaaggaaaacgtcatt
atcggtaagattattcctgccggtactggcatgaagaaatatcgtgacatcgtccctgaa
gaagatgctcctgctaaagttgcaagcggcgtttattcactcaaagatgacggcgtttct
accttggaagatgttgccaaagccaacaatttgaacagcgaagattaa
DBGET
integrated database retrieval system
