Ligilactobacillus ruminis: LRC_03010
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Entry
LRC_03010 CDS
T01626
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRC_03010 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrm03021
]
LRC_03010 (rpoA)
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_03010 (rpoA)
Enzymes [BR:
lrm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRC_03010 (rpoA)
Transcription machinery [BR:
lrm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRC_03010 (rpoA)
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRC_03010 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
AEN77620
UniProt:
G2SR75
LinkDB
All DBs
Position
318316..319260
Genome browser
AA seq
314 aa
AA seq
DB search
MIEFEKPKIHKIEESNNHGKFVIEPLERGYGTTLGNSLRRILLSSLPGAAITDVQIDGVL
HEFSTVKGVLEDVTEIILNLKKVALKLNSEEPQSLEFDIVGPKEVTAGDISTNSDVEILN
PDLYICTVADGASFHARMTANKGRGYVSANENKAKADDMPIGVLAIDSIYTPIERVNYQV
EKTRVGQKNDYDKLTLDVWTNGSITPSEAISLSAKILTEHLALFVNLTDEAKNAEIMVEK
EETHKEKMLEMTIEELDLSVRSYNCLKRASINTVQALTNKSESDMMKVRNLGRKSLEEVK
AKLADLGLSLRHDD
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaatttgaaaaaccaaaaattcacaaaattgaagaaagcaataaccatggcaag
tttgtcattgaaccgcttgaacgtggctatggtacgacattaggcaattcgcttcgtcgt
atcctgctttcttcattaccaggtgctgctatcacagacgttcaaattgatggcgttttg
cacgaattctccactgtaaaaggtgtgcttgaagacgtgactgaaatcattttgaatctc
aagaaagttgcattgaaactcaactccgaagaaccacaatcattggaattcgatattgtt
ggacctaaggaagttactgccggcgatatcagcacgaacagcgatgttgaaatcctcaat
ccggatctttacatctgcacggttgctgatggtgcttcattccatgcacggatgactgca
aacaaaggtcgtggctacgtttccgcaaacgaaaacaaggctaaggcagatgatatgcca
atcggcgtattagcaatcgactcgatttataccccgatcgaacgtgtcaactaccaagta
gaaaaaacacgtgttggtcaaaaaaatgattatgacaaattaacattagacgtatggact
aacggctcaatcacgcctagcgaagcaattagtctgtccgctaagatcttaacggagcat
ttggcgttattcgttaatttgacagatgaagctaagaatgctgaaatcatggtcgaaaaa
gaagaaacgcacaaagaaaaaatgctcgaaatgacaattgaggaactcgatttgtccgtt
cgttcatacaactgtttgaagcgtgcaagcatcaataccgtgcaggctttgacaaacaag
tctgaatctgacatgatgaaggttcgtaatctgggccgcaagtcattggaagaagtcaag
gctaagttggcagatcttggtttatcattacgtcatgatgactaa
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