Ligilactobacillus ruminis: LRC_03360
Help
Entry
LRC_03360 CDS
T01626
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRC_03360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrm03019
]
LRC_03360
03009 Ribosome biogenesis [BR:
lrm03009
]
LRC_03360
Enzymes [BR:
lrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRC_03360
Messenger RNA biogenesis [BR:
lrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRC_03360
Ribosome biogenesis [BR:
lrm03009
]
Prokaryotic type
rRNA helicases
LRC_03360
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AEN77655
UniProt:
G2SRB0
LinkDB
All DBs
Position
359022..360515
Genome browser
AA seq
497 aa
AA seq
DB search
MKFNELGLEEDLLKAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPIL
QHVDVKEEHIQAIVISPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIKLLKHVP
QILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQTLLF
SATMPKTIRSIGEKFMHEPQVVKIKAKELTTDLVDQYFVKAREYEKFDIMTRILDVQAPE
LTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGISVTFVTPNEMEYLRVIERLTKK
RMEPLRPPTEKEAFIGQISSALGDIKDLVEKTETEKYEKQANELLEQYDAVELVAALLNE
MTKDDASSVPVKITPERPLPRRKSSNKKFYGPRNRNVKGSKRKGYYNDRKNGRDKKYDRS
KRQETGKRNFTIRNKKD
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaatgaacttggtcttgaagaagaccttttaaaggcaatcaagcggagcgga
tttgaagaagcaacaccgatccaggaagcaaccattccgcttgtcttggccggtatcgac
gttattggtcaggctcaaaccgggacgggcaaaacggctgcgtttggtttgccgattttg
cagcatgtcgacgttaaagaagaacacattcaggcaatcgtcatatcgccgacacgtgaa
ttggcgattcagacgcaagaggaactgtatcgtttaggcaaagacaaacgtgccaaagtt
caggttgtctatggcggagcagatattcgacgccaaatcaagcttttaaagcacgttccg
cagattttggtcggaacgccggggagactgcttgaccatattaatcgtaagactgtcgat
ttgtcgcatgttaagacgcttgttttggatgaagccgacgaaatgctcgacatgggcttt
ttggaagatattgaagcaattatcaaaaacgttccggaagaaagacagacgctgcttttt
tccgcaacgatgccaaagacaatccgctcaatcggcgaaaaattcatgcatgaaccgcaa
gttgtcaagatcaaggcaaaagagcttacgaccgatttggtcgatcagtatttcgtcaaa
gcgcgcgaatatgaaaaattcgatatcatgacgcgtattttggacgtacaggctcctgaa
ttgacgatcgtttttggtcgaacgaagcgccgcgtcgatgagctttccaagggattggaa
gccagaggatacaacgctgccggtattcatggtgatctgacacaacaacgtcgcatgaac
attttgaagaagtttaaagaaggacgtttggacatcttggttgcgacagacgttgcggcc
agggggttggacatttccggcgttactcacgtttataactatgatattccccaagaccct
gaaagttacgttcaccgcattggacgtaccggtcgcgccgggcatcacggcatttccgta
acgttcgtcacgccaaatgaaatggaatatctgcgcgtgattgaacgtttgaccaaaaag
cgcatggagccgttgcgtccaccgacagaaaaggaagctttcatcggacaaatttccagt
gctttgggagacatcaaggatctggttgaaaaaactgagaccgaaaagtatgaaaaacaa
gcaaatgagcttttggaacagtatgatgcggtcgaacttgtcgcggcattgctgaatgaa
atgaccaaagatgatgccagttctgttcctgtcaagattacgcctgagcgtcctcttccg
agaagaaagagttcaaacaagaagttttatggtcctcgaaacagaaacgtcaagggatca
aagcgcaagggatactataatgatcggaaaaacggtcgggacaaaaaatatgatcgaagc
aagcgtcaagaaacaggcaaacgcaactttacgataagaaacaagaaggactaa
DBGET
integrated database retrieval system
